Wall clock time and date at job start Tue Mar 31 2020 15:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47681 * 2 1 4 4 C 1.52998 * 109.47286 * 240.00218 * 2 1 3 5 5 O 1.45199 * 109.47340 * 120.00206 * 2 1 3 6 6 C 1.34644 * 117.00039 * 59.99554 * 5 2 1 7 7 O 1.21512 * 119.99449 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00073 * 180.02562 * 6 5 2 9 9 C 1.46492 * 120.00195 * 180.02562 * 8 6 5 10 10 H 1.09013 * 110.28456 * 324.32480 * 9 8 6 11 11 C 1.54257 * 110.32759 * 86.44973 * 9 8 6 12 12 C 1.54381 * 105.14978 * 118.84641 * 11 9 8 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.53001 * 109.46857 * 54.49058 * 14 13 12 16 16 C 1.53004 * 109.47407 * 179.97438 * 15 14 13 17 17 S 1.80999 * 109.47185 * 180.02562 * 16 15 14 18 18 C 1.76199 * 99.99833 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00182 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99810 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47344 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47086 * 120.00489 * 22 20 18 25 25 H 1.48503 * 109.46975 * 239.99902 * 22 20 18 26 26 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 27 27 H 1.09007 * 109.47066 * 300.00412 * 1 2 3 28 28 H 1.09001 * 109.46897 * 59.99532 * 1 2 3 29 29 H 1.08991 * 109.47554 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47620 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46679 * 300.00556 * 3 2 1 32 32 H 1.09007 * 109.46527 * 59.99355 * 3 2 1 33 33 H 1.09003 * 109.47097 * 300.00234 * 4 2 1 34 34 H 1.08999 * 109.47601 * 59.99933 * 4 2 1 35 35 H 1.09000 * 109.47720 * 180.02562 * 4 2 1 36 36 H 0.96999 * 119.99921 * 0.02562 * 8 6 5 37 37 H 1.09002 * 110.32715 * 237.79696 * 11 9 8 38 38 H 1.08998 * 110.32251 * 359.90223 * 11 9 8 39 39 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 40 40 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 41 41 H 1.09003 * 109.47294 * 174.49077 * 14 13 12 42 42 H 1.09000 * 109.47223 * 294.49440 * 14 13 12 43 43 H 1.09003 * 109.47184 * 300.00087 * 15 14 13 44 44 H 1.09000 * 109.46892 * 60.00179 * 15 14 13 45 45 H 1.08994 * 109.47102 * 300.00500 * 16 15 14 46 46 H 1.09001 * 109.46563 * 59.99817 * 16 15 14 47 47 H 0.97001 * 120.00026 * 179.97438 * 21 20 18 48 48 H 1.08999 * 110.41133 * 201.79165 * 26 13 12 49 49 H 1.09004 * 110.50861 * 79.40616 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0671 -2.6655 2.4171 9 6 1.6740 -4.0669 2.5831 10 1 0.6613 -4.2220 2.2104 11 6 2.6638 -4.9921 1.8457 12 6 3.2771 -5.8852 2.9455 13 7 3.1132 -5.0999 4.1978 14 6 3.1780 -5.9715 5.3785 15 6 4.4759 -6.7809 5.3443 16 6 4.5437 -7.6883 6.5743 17 16 6.0796 -8.6453 6.5342 18 6 5.8998 -9.5747 8.0202 19 1 5.0222 -9.4441 8.6360 20 6 6.8860 -10.4747 8.3995 21 7 7.9558 -10.6335 7.6492 22 14 6.6951 -11.4606 9.9746 23 1 5.4130 -11.1007 10.6316 24 1 6.6967 -12.9107 9.6542 25 1 7.8239 -11.1547 10.8899 26 6 1.7700 -4.4785 4.0678 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 2.6262 -2.2364 3.0836 37 1 2.1369 -5.6026 1.1123 38 1 3.4412 -4.4034 1.3587 39 1 2.7354 -6.8285 3.0151 40 1 4.3328 -6.0660 2.7435 41 1 3.1536 -5.3620 6.2819 42 1 2.3258 -6.6511 5.3756 43 1 4.5003 -7.3904 4.4409 44 1 5.3281 -6.1013 5.3472 45 1 4.5195 -7.0785 7.4774 46 1 3.6915 -8.3679 6.5719 47 1 8.6452 -11.2622 7.9144 48 1 1.6928 -3.6020 4.7112 49 1 0.9903 -5.1995 4.3138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120071421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:09 Heat of formation + Delta-G solvation = -114.734704 kcal Electronic energy + Delta-G solvation = -25749.811986 eV Core-core repulsion = 22029.708895 eV Total energy + Delta-G solvation = -3720.103090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84447 -40.28056 -38.17352 -36.17439 -35.13137 -34.60771 -33.97761 -31.26485 -29.46802 -28.33317 -28.26936 -27.83717 -26.29740 -23.87004 -23.31519 -21.73058 -21.18762 -21.05992 -19.53665 -19.23490 -17.80557 -17.23468 -16.99921 -16.89778 -16.89343 -16.30765 -15.94846 -15.58338 -15.49731 -15.32816 -14.79160 -14.74981 -14.41450 -13.90058 -13.75922 -13.37892 -13.35090 -13.28645 -13.08412 -12.93912 -12.91361 -12.86531 -12.84029 -12.82403 -12.41974 -12.39214 -12.31671 -12.25988 -12.14924 -11.94070 -11.65021 -11.35619 -11.32493 -11.15309 -11.07088 -10.30899 -10.22581 -9.45891 -8.66231 -8.37486 -6.13546 1.20213 1.31795 1.38336 1.49624 1.75312 1.79181 2.28450 2.96899 2.97199 3.17821 3.32758 3.47265 3.69867 3.78143 3.83345 3.97893 4.01927 4.12955 4.19731 4.29365 4.34135 4.44349 4.50873 4.53329 4.64225 4.64662 4.69513 4.76613 4.79493 4.79910 4.83751 4.86762 4.90644 4.91724 5.01360 5.07855 5.14364 5.22210 5.29631 5.30858 5.32299 5.40102 5.42095 5.62441 5.83848 5.98571 6.18356 6.44993 7.05001 7.37914 8.72157 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.040077 B = 0.001620 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.490009 B =17278.337768 C =17387.912727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.691 5.691 9 C 0.166 3.834 10 H 0.097 0.903 11 C -0.129 4.129 12 C 0.031 3.969 13 N -0.516 5.516 14 C 0.060 3.940 15 C -0.085 4.085 16 C -0.087 4.087 17 S -0.200 6.200 18 C -0.538 4.538 19 H 0.073 0.927 20 C 0.014 3.986 21 N -0.908 5.908 22 Si 0.995 3.005 23 H -0.262 1.262 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.029 3.971 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.416 0.584 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.271 0.729 48 H 0.103 0.897 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.599 22.938 -14.699 31.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.089 3.911 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.350 5.350 9 C 0.061 3.939 10 H 0.115 0.885 11 C -0.169 4.169 12 C -0.097 4.097 13 N -0.240 5.240 14 C -0.070 4.070 15 C -0.124 4.124 16 C -0.237 4.237 17 S 0.028 5.972 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.190 4.190 21 N -0.544 5.544 22 Si 0.817 3.183 23 H -0.186 1.186 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.099 4.099 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.253 0.747 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.121 0.879 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.512 23.050 -15.862 31.993 hybrid contribution -1.006 -1.395 1.856 2.531 sum -16.519 21.655 -14.006 30.626 Atomic orbital electron populations 1.22461 0.93831 1.03719 1.03546 1.22386 0.94653 0.92606 0.81480 1.21888 1.02348 0.90848 1.04302 1.22471 1.01491 1.02290 0.97448 1.86325 1.71597 1.23295 1.47365 1.18274 0.78621 0.80712 0.82402 1.90888 1.42417 1.71059 1.43983 1.44835 1.54890 1.11987 1.23331 1.21633 0.98807 0.78022 0.95415 0.88524 1.22741 0.98685 0.97804 0.97646 1.23171 1.01563 0.95548 0.89454 1.65495 1.27819 1.28811 1.01888 1.22196 0.96049 0.94562 0.94167 1.21199 0.98532 0.96788 0.95853 1.23161 0.99109 1.00030 1.01396 1.84660 1.27311 1.50731 1.34462 1.23084 1.09321 1.27303 1.08839 0.90876 1.26073 0.93981 0.97435 1.01542 1.70164 1.09240 1.35675 1.39352 0.84961 0.78720 0.77662 0.76994 1.18602 1.19720 1.19692 1.23452 0.90689 1.00946 0.94826 0.91921 0.89254 0.91827 0.91423 0.88048 0.91162 0.91861 0.89208 0.92252 0.74730 0.89978 0.91328 0.93071 0.90467 0.89668 0.93694 0.91872 0.91688 0.91767 0.91970 0.91988 0.87898 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 8.37 71.98 0.60 -1.98 16 2 C 0.12 1.89 1.13 -10.80 -0.01 1.88 16 3 C -0.14 -1.30 8.85 71.98 0.64 -0.66 16 4 C -0.18 -2.78 8.37 71.98 0.60 -2.17 16 5 O -0.37 -7.15 9.94 -55.53 -0.55 -7.70 16 6 C 0.65 13.63 8.05 129.79 1.04 14.68 16 7 O -0.59 -14.99 11.58 19.80 0.23 -14.76 16 8 N -0.69 -11.85 5.00 -565.86 -2.83 -14.68 16 9 C 0.17 2.76 3.36 45.89 0.15 2.91 16 10 H 0.10 1.69 7.64 -2.38 -0.02 1.67 16 11 C -0.13 -2.38 6.77 31.49 0.21 -2.17 16 12 C 0.03 0.63 5.12 86.42 0.44 1.07 16 13 N -0.52 -10.48 5.49 -881.02 -4.83 -15.31 16 14 C 0.06 1.39 5.06 86.30 0.44 1.82 16 15 C -0.08 -2.62 4.93 30.60 0.15 -2.47 16 16 C -0.09 -3.43 5.67 71.98 0.41 -3.02 16 17 S -0.20 -10.66 21.44 -56.49 -1.21 -11.87 16 18 C -0.54 -31.09 9.50 67.95 0.65 -30.44 16 19 H 0.07 4.07 7.80 -2.91 -0.02 4.04 16 20 C 0.01 0.83 5.49 84.86 0.47 1.29 16 21 N -0.91 -54.97 13.22 21.65 0.29 -54.68 16 22 Si 0.99 43.91 29.55 68.60 2.03 45.94 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.03 0.44 6.10 86.45 0.53 0.97 16 27 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.27 5.88 -2.39 -0.01 1.25 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 36 H 0.42 6.09 8.67 -92.71 -0.80 5.28 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.40 7.95 -2.39 -0.02 1.38 16 39 H 0.05 1.04 8.00 -2.38 -0.02 1.02 16 40 H 0.08 1.77 7.68 -2.39 -0.02 1.75 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 42 H 0.04 0.98 7.88 -2.39 -0.02 0.96 16 43 H 0.06 1.99 6.84 -2.39 -0.02 1.97 16 44 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 2.47 8.14 -2.40 -0.02 2.45 16 46 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 48 H 0.10 1.34 7.99 -2.39 -0.02 1.32 16 49 H 0.07 1.02 7.82 -2.39 -0.02 1.00 16 Total: -1.00 -70.05 400.37 -0.45 -70.50 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.12 Total: 20.87 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 6.32 Total: -18.30 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -7.38 Total: -84.68 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.32 Total: -22.46 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -10.66 SS G_CDS: -1.21 Total: -11.87 kcal Total: -70.05 -0.45 -70.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120071421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.234 kcal (2) G-P(sol) polarization free energy of solvation -70.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds