Wall clock time and date at job start Tue Mar 31 2020 15:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47321 * 2 1 4 4 H 1.08997 * 109.47103 * 305.00194 * 3 2 1 5 5 S 1.81401 * 109.47265 * 64.99649 * 3 2 1 6 6 C 1.81401 * 103.00198 * 189.39776 * 5 3 2 7 7 C 1.50699 * 109.47417 * 184.99831 * 3 2 1 8 8 O 1.21283 * 120.00071 * 260.97519 * 7 3 2 9 9 N 1.34778 * 119.99705 * 80.97253 * 7 3 2 10 10 C 1.46495 * 120.00157 * 5.57564 * 9 7 3 11 11 C 1.50702 * 109.47183 * 85.07622 * 10 9 7 12 12 H 1.08002 * 119.99613 * 5.01940 * 11 10 9 13 13 C 1.37874 * 120.00533 * 185.01410 * 11 10 9 14 14 N 1.31505 * 120.00304 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99733 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47055 * 90.00173 * 15 13 11 17 17 H 1.48499 * 109.47434 * 209.99828 * 15 13 11 18 18 H 1.48504 * 109.47450 * 330.00305 * 15 13 11 19 19 C 1.46504 * 119.99846 * 185.58172 * 9 7 3 20 20 C 1.52996 * 109.47343 * 89.99576 * 19 9 7 21 21 N 1.46898 * 109.47045 * 179.97438 * 20 19 9 22 22 C 1.47012 * 111.00192 * 293.63505 * 21 20 19 23 23 C 1.53098 * 109.25849 * 177.60518 * 22 21 20 24 24 O 1.43023 * 109.25518 * 56.85448 * 23 22 21 25 25 C 1.43019 * 113.73483 * 301.32641 * 24 23 22 26 26 C 1.47017 * 110.99838 * 170.00305 * 21 20 19 27 27 H 1.09001 * 109.47022 * 60.00037 * 1 2 3 28 28 H 1.09004 * 109.47096 * 299.99952 * 1 2 3 29 29 H 1.09005 * 109.47403 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47022 * 119.99963 * 2 1 3 31 31 H 1.09001 * 109.46983 * 239.99287 * 2 1 3 32 32 H 1.09007 * 109.47011 * 304.98721 * 6 5 3 33 33 H 1.08996 * 109.47242 * 64.98578 * 6 5 3 34 34 H 1.08999 * 109.47301 * 184.98667 * 6 5 3 35 35 H 1.09006 * 109.47362 * 205.07680 * 10 9 7 36 36 H 1.09003 * 109.47271 * 325.07696 * 10 9 7 37 37 H 0.97005 * 120.00505 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.46850 * 210.00113 * 19 9 7 39 39 H 1.08997 * 109.47022 * 329.99526 * 19 9 7 40 40 H 1.09004 * 109.47508 * 300.00424 * 20 19 9 41 41 H 1.09007 * 109.47169 * 60.00096 * 20 19 9 42 42 H 1.09000 * 109.50827 * 297.54449 * 22 21 20 43 43 H 1.08996 * 109.50443 * 57.67416 * 22 21 20 44 44 H 1.09001 * 109.51188 * 296.91981 * 23 22 21 45 45 H 1.09003 * 109.54432 * 176.80267 * 23 22 21 46 46 H 1.09004 * 109.50703 * 298.73640 * 25 24 23 47 47 H 1.09005 * 109.54238 * 178.63076 * 25 24 23 48 48 H 1.09001 * 109.50648 * 302.32610 * 26 21 20 49 49 H 1.08995 * 109.50934 * 62.41593 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 16 1.5601 2.2535 1.5500 6 6 1.9852 3.9913 1.2499 7 6 3.5419 1.4442 -0.1238 8 8 4.2317 1.5795 0.8646 9 7 4.1186 1.2955 -1.3329 10 6 3.2894 1.2546 -2.5399 11 6 3.0127 2.6604 -3.0071 12 1 3.4799 3.4969 -2.5086 13 6 2.1632 2.8788 -4.0708 14 7 1.9222 4.1056 -4.4788 15 14 1.3557 1.4320 -4.9335 16 1 0.0574 1.1279 -4.2800 17 1 1.1238 1.7729 -6.3601 18 1 2.2439 0.2451 -4.8462 19 6 5.5747 1.1745 -1.4400 20 6 5.9716 -0.3006 -1.3534 21 7 7.4316 -0.4219 -1.4615 22 6 7.8963 -0.0193 -2.7968 23 6 9.4242 -0.1037 -2.8465 24 8 9.8345 -1.4313 -2.5079 25 6 9.3994 -1.8557 -1.2133 26 6 7.8713 -1.7891 -1.1471 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5140 -0.8899 32 1 3.0335 4.0641 0.9601 33 1 1.3589 4.3856 0.4497 34 1 1.8188 4.5684 2.1595 35 1 3.8146 0.7081 -3.3233 36 1 2.3472 0.7539 -2.3167 37 1 1.3248 4.2592 -5.2275 38 1 5.9039 1.5839 -2.3950 39 1 6.0459 1.7259 -0.6265 40 1 5.6423 -0.7100 -0.3984 41 1 5.5004 -0.8521 -2.1670 42 1 7.4704 -0.6859 -3.5467 43 1 7.5817 1.0046 -2.9983 44 1 9.8511 0.6021 -2.1339 45 1 9.7703 0.1390 -3.8512 46 1 9.8256 -1.2009 -0.4532 47 1 9.7270 -2.8802 -1.0362 48 1 7.5385 -2.0570 -0.1443 49 1 7.4444 -2.4840 -1.8701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128899536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:42 Heat of formation + Delta-G solvation = -75.720508 kcal Electronic energy + Delta-G solvation = -27849.468398 eV Core-core repulsion = 24131.057090 eV Total energy + Delta-G solvation = -3718.411308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.80800 -39.24352 -36.26577 -35.04462 -34.28012 -32.68654 -31.32536 -30.20235 -28.64162 -27.94147 -27.56866 -25.66178 -24.11821 -22.77008 -22.27128 -21.53110 -20.41933 -18.59433 -17.21040 -16.87841 -16.57469 -16.27929 -16.05408 -15.29631 -15.19055 -15.07936 -14.94441 -14.63383 -14.32285 -14.17688 -13.78932 -13.50198 -13.15070 -13.02042 -12.93927 -12.59175 -12.51087 -12.29676 -12.10046 -11.97531 -11.87825 -11.70349 -11.52002 -11.44510 -11.04150 -10.93231 -10.90052 -10.79095 -10.67287 -10.51916 -10.33516 -9.82731 -9.72480 -9.61223 -9.16200 -8.84226 -8.46023 -7.89253 -7.18449 -6.33882 -4.36924 2.02435 2.83671 3.06975 3.15024 3.16433 3.20548 3.49932 3.74506 4.02777 4.14940 4.75736 4.86806 4.91207 4.95476 5.03105 5.04473 5.07553 5.16041 5.30676 5.33959 5.43784 5.45506 5.52857 5.55705 5.60598 5.65406 5.66778 5.70632 5.81417 5.85317 5.86197 5.93789 6.07729 6.12088 6.18429 6.26997 6.29603 6.30540 6.44117 6.55260 6.88644 6.89793 7.01898 7.22748 7.30062 7.96276 8.26281 8.69331 8.79092 9.24824 10.78366 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009867 B = 0.004290 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.131447 B = 6525.203870 C = 8070.851079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 C -0.081 4.081 4 H 0.128 0.872 5 S -0.222 6.222 6 C -0.121 4.121 7 C 0.521 3.479 8 O -0.542 6.542 9 N -0.588 5.588 10 C 0.207 3.793 11 C -0.546 4.546 12 H 0.078 0.922 13 C 0.080 3.920 14 N -0.886 5.886 15 Si 0.867 3.133 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.125 3.875 20 C 0.044 3.956 21 N -0.532 5.532 22 C 0.012 3.988 23 C 0.064 3.936 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.019 3.981 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.268 0.732 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.043 0.957 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 -9.649 5.260 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 C -0.213 4.213 4 H 0.146 0.854 5 S 0.005 5.995 6 C -0.289 4.289 7 C 0.306 3.694 8 O -0.420 6.420 9 N -0.320 5.320 10 C 0.086 3.914 11 C -0.584 4.584 12 H 0.096 0.904 13 C -0.124 4.124 14 N -0.523 5.523 15 Si 0.693 3.307 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.190 1.190 19 C 0.001 3.999 20 C -0.085 4.085 21 N -0.258 5.258 22 C -0.117 4.117 23 C -0.012 4.012 24 O -0.307 6.307 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.927 -9.680 6.761 13.212 hybrid contribution -0.590 -0.353 -2.351 2.449 sum 5.338 -10.033 4.410 12.190 Atomic orbital electron populations 1.21841 0.94392 1.01604 1.03178 1.21248 0.97144 0.92216 1.02830 1.23620 0.96155 1.01395 1.00140 0.85400 1.86110 1.82123 1.06422 1.24846 1.23364 1.05333 0.94865 1.05374 1.20285 0.89888 0.76195 0.83058 1.90660 1.64263 1.50102 1.36939 1.47801 1.06389 1.70695 1.07068 1.19870 0.90433 0.98520 0.82571 1.21343 1.29065 0.91488 1.16522 0.90397 1.24856 0.95769 0.95525 0.96293 1.69875 1.35943 1.19680 1.26767 0.86992 0.80658 0.83238 0.79835 1.19523 1.20712 1.18961 1.21218 0.80856 0.94567 1.03287 1.22515 0.86053 0.98496 1.01386 1.62119 1.12573 1.23481 1.27631 1.22893 0.96415 1.02526 0.89820 1.22683 0.93097 0.84144 1.01321 1.87962 1.76488 1.31670 1.34619 1.22646 0.92742 1.00444 0.85380 1.22766 0.96715 0.89618 1.01875 0.92126 0.91297 0.92641 0.91109 0.90474 0.90304 0.90214 0.88733 0.94988 0.95108 0.92203 0.90386 0.89654 0.90517 0.94576 0.93837 0.88835 0.92154 0.88442 0.92211 0.88658 0.89652 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.74 37.16 0.36 -1.71 16 2 C -0.10 -1.47 5.10 -26.73 -0.14 -1.61 16 3 C -0.08 -1.48 1.75 -27.89 -0.05 -1.53 16 4 H 0.13 2.57 6.48 -51.93 -0.34 2.23 16 5 S -0.22 -3.84 19.83 -107.50 -2.13 -5.97 16 6 C -0.12 -1.98 10.65 101.05 1.08 -0.91 16 7 C 0.52 10.38 6.59 -10.99 -0.07 10.31 16 8 O -0.54 -11.83 15.61 5.55 0.09 -11.74 16 9 N -0.59 -11.45 2.47 -175.06 -0.43 -11.88 16 10 C 0.21 4.34 3.87 -5.20 -0.02 4.32 16 11 C -0.55 -13.70 9.28 -34.44 -0.32 -14.02 16 12 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 13 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.89 -24.78 13.96 55.43 0.77 -24.00 16 15 Si 0.87 19.01 27.37 -169.99 -4.65 14.35 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.27 -5.51 6.69 56.52 0.38 -5.13 16 19 C 0.12 2.17 5.36 -4.04 -0.02 2.15 16 20 C 0.04 0.66 5.28 -3.83 -0.02 0.64 16 21 N -0.53 -7.12 4.73 -234.31 -1.11 -8.23 16 22 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 23 C 0.06 0.71 7.01 37.21 0.26 0.97 16 24 O -0.39 -4.76 10.83 -35.23 -0.38 -5.14 16 25 C 0.06 0.67 7.01 37.21 0.26 0.93 16 26 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.93 7.13 -51.93 -0.37 0.56 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.16 6.88 -51.93 -0.36 0.81 16 32 H 0.08 1.43 8.06 -51.92 -0.42 1.01 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.30 8.14 -51.92 -0.42 0.88 16 35 H 0.03 0.66 7.44 -51.93 -0.39 0.28 16 36 H 0.03 0.62 4.43 -51.93 -0.23 0.39 16 37 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.08 1.35 6.44 -51.93 -0.33 1.01 16 39 H 0.09 1.59 7.35 -51.93 -0.38 1.21 16 40 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 41 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.17 6.38 -51.93 -0.33 0.84 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 49 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -29.10 394.67 -9.35 -38.45 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.64 Total: 6.39 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 1.18 Total: 1.83 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.77 Total: -44.11 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.29 Total: -16.89 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.65 Total: 14.35 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.13 Total: -5.97 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.10 -9.35 -38.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128899536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.268 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds