Wall clock time and date at job start Tue Mar 31 2020 15:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47321 * 2 1 4 4 H 1.08997 * 109.47103 * 305.00194 * 3 2 1 5 5 S 1.81401 * 109.47265 * 64.99649 * 3 2 1 6 6 C 1.81401 * 103.00198 * 189.39776 * 5 3 2 7 7 C 1.50699 * 109.47417 * 184.99831 * 3 2 1 8 8 O 1.21283 * 120.00071 * 260.97519 * 7 3 2 9 9 N 1.34778 * 119.99705 * 80.97253 * 7 3 2 10 10 C 1.46495 * 120.00157 * 5.57564 * 9 7 3 11 11 C 1.50702 * 109.47183 * 85.07622 * 10 9 7 12 12 H 1.08002 * 119.99613 * 5.01940 * 11 10 9 13 13 C 1.37874 * 120.00533 * 185.01410 * 11 10 9 14 14 N 1.31505 * 120.00304 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99733 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47055 * 90.00173 * 15 13 11 17 17 H 1.48499 * 109.47434 * 209.99828 * 15 13 11 18 18 H 1.48504 * 109.47450 * 330.00305 * 15 13 11 19 19 C 1.46504 * 119.99846 * 185.58172 * 9 7 3 20 20 C 1.52996 * 109.47343 * 89.99576 * 19 9 7 21 21 N 1.46898 * 109.47045 * 179.97438 * 20 19 9 22 22 C 1.47012 * 111.00192 * 293.63505 * 21 20 19 23 23 C 1.53098 * 109.25849 * 177.60518 * 22 21 20 24 24 O 1.43023 * 109.25518 * 56.85448 * 23 22 21 25 25 C 1.43019 * 113.73483 * 301.32641 * 24 23 22 26 26 C 1.47017 * 110.99838 * 170.00305 * 21 20 19 27 27 H 1.09001 * 109.47022 * 60.00037 * 1 2 3 28 28 H 1.09004 * 109.47096 * 299.99952 * 1 2 3 29 29 H 1.09005 * 109.47403 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47022 * 119.99963 * 2 1 3 31 31 H 1.09001 * 109.46983 * 239.99287 * 2 1 3 32 32 H 1.09007 * 109.47011 * 304.98721 * 6 5 3 33 33 H 1.08996 * 109.47242 * 64.98578 * 6 5 3 34 34 H 1.08999 * 109.47301 * 184.98667 * 6 5 3 35 35 H 1.09006 * 109.47362 * 205.07680 * 10 9 7 36 36 H 1.09003 * 109.47271 * 325.07696 * 10 9 7 37 37 H 0.97005 * 120.00505 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.46850 * 210.00113 * 19 9 7 39 39 H 1.08997 * 109.47022 * 329.99526 * 19 9 7 40 40 H 1.09004 * 109.47508 * 300.00424 * 20 19 9 41 41 H 1.09007 * 109.47169 * 60.00096 * 20 19 9 42 42 H 1.09000 * 109.50827 * 297.54449 * 22 21 20 43 43 H 1.08996 * 109.50443 * 57.67416 * 22 21 20 44 44 H 1.09001 * 109.51188 * 296.91981 * 23 22 21 45 45 H 1.09003 * 109.54432 * 176.80267 * 23 22 21 46 46 H 1.09004 * 109.50703 * 298.73640 * 25 24 23 47 47 H 1.09005 * 109.54238 * 178.63076 * 25 24 23 48 48 H 1.09001 * 109.50648 * 302.32610 * 26 21 20 49 49 H 1.08995 * 109.50934 * 62.41593 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 16 1.5601 2.2535 1.5500 6 6 1.9852 3.9913 1.2499 7 6 3.5419 1.4442 -0.1238 8 8 4.2317 1.5795 0.8646 9 7 4.1186 1.2955 -1.3329 10 6 3.2894 1.2546 -2.5399 11 6 3.0127 2.6604 -3.0071 12 1 3.4799 3.4969 -2.5086 13 6 2.1632 2.8788 -4.0708 14 7 1.9222 4.1056 -4.4788 15 14 1.3557 1.4320 -4.9335 16 1 0.0574 1.1279 -4.2800 17 1 1.1238 1.7729 -6.3601 18 1 2.2439 0.2451 -4.8462 19 6 5.5747 1.1745 -1.4400 20 6 5.9716 -0.3006 -1.3534 21 7 7.4316 -0.4219 -1.4615 22 6 7.8963 -0.0193 -2.7968 23 6 9.4242 -0.1037 -2.8465 24 8 9.8345 -1.4313 -2.5079 25 6 9.3994 -1.8557 -1.2133 26 6 7.8713 -1.7891 -1.1471 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5140 -0.8899 32 1 3.0335 4.0641 0.9601 33 1 1.3589 4.3856 0.4497 34 1 1.8188 4.5684 2.1595 35 1 3.8146 0.7081 -3.3233 36 1 2.3472 0.7539 -2.3167 37 1 1.3248 4.2592 -5.2275 38 1 5.9039 1.5839 -2.3950 39 1 6.0459 1.7259 -0.6265 40 1 5.6423 -0.7100 -0.3984 41 1 5.5004 -0.8521 -2.1670 42 1 7.4704 -0.6859 -3.5467 43 1 7.5817 1.0046 -2.9983 44 1 9.8511 0.6021 -2.1339 45 1 9.7703 0.1390 -3.8512 46 1 9.8256 -1.2009 -0.4532 47 1 9.7270 -2.8802 -1.0362 48 1 7.5385 -2.0570 -0.1443 49 1 7.4444 -2.4840 -1.8701 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128899536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:40 Heat of formation + Delta-G solvation = -94.146163 kcal Electronic energy + Delta-G solvation = -27850.267394 eV Core-core repulsion = 24131.057090 eV Total energy + Delta-G solvation = -3719.210304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.16564 -40.41958 -37.49914 -36.55017 -35.55271 -34.59681 -32.23830 -31.54765 -30.04028 -29.62217 -28.80652 -26.86719 -25.04565 -24.58622 -23.48308 -22.80961 -21.38926 -20.15728 -19.12534 -18.37886 -17.84564 -17.51248 -17.11144 -16.59320 -16.38909 -16.23581 -16.12312 -15.99405 -15.79659 -15.46970 -15.13502 -14.71758 -14.60196 -14.49012 -14.33184 -14.16960 -13.84607 -13.53751 -13.51842 -13.25370 -13.08211 -13.01945 -12.83239 -12.56191 -12.47185 -12.33504 -12.16693 -12.13942 -11.98782 -11.87871 -11.72853 -11.48264 -11.03825 -10.86236 -10.75515 -10.68707 -9.62021 -9.42073 -8.59342 -8.34281 -6.42831 0.61571 1.36449 1.38018 1.39667 1.46852 1.66970 2.09819 2.29975 2.79113 2.95912 2.99691 3.45733 3.75311 3.82278 3.89073 3.96469 4.03596 4.07885 4.17646 4.21507 4.27090 4.29151 4.34481 4.38859 4.41127 4.50818 4.54791 4.60209 4.68833 4.70184 4.74436 4.79266 4.80364 4.82619 4.88014 4.93955 4.99908 5.03356 5.12244 5.37519 5.40203 5.56430 5.85040 5.89908 6.11551 6.14988 6.47356 6.63293 7.14654 7.25783 8.81595 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009867 B = 0.004290 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.131447 B = 6525.203870 C = 8070.851079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.082 4.082 4 H 0.107 0.893 5 S -0.215 6.215 6 C -0.119 4.119 7 C 0.518 3.482 8 O -0.565 6.565 9 N -0.590 5.590 10 C 0.218 3.782 11 C -0.543 4.543 12 H 0.028 0.972 13 C 0.027 3.973 14 N -0.937 5.937 15 Si 0.930 3.070 16 H -0.256 1.256 17 H -0.286 1.286 18 H -0.239 1.239 19 C 0.126 3.874 20 C 0.061 3.939 21 N -0.542 5.542 22 C 0.011 3.989 23 C 0.067 3.933 24 O -0.402 6.402 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.269 0.731 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.115 0.885 46 H 0.061 0.939 47 H 0.120 0.880 48 H 0.094 0.906 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 -12.408 5.274 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.214 4.214 4 H 0.125 0.875 5 S 0.012 5.988 6 C -0.287 4.287 7 C 0.304 3.696 8 O -0.444 6.444 9 N -0.321 5.321 10 C 0.096 3.904 11 C -0.582 4.582 12 H 0.046 0.954 13 C -0.173 4.173 14 N -0.576 5.576 15 Si 0.753 3.247 16 H -0.180 1.180 17 H -0.212 1.212 18 H -0.162 1.162 19 C 0.003 3.997 20 C -0.068 4.068 21 N -0.268 5.268 22 C -0.117 4.117 23 C -0.010 4.010 24 O -0.321 6.321 25 C -0.012 4.012 26 C -0.109 4.109 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.141 0.859 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.138 0.862 48 H 0.112 0.888 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.660 -12.460 6.790 15.277 hybrid contribution -0.420 0.628 -2.286 2.408 sum 5.240 -11.831 4.504 13.701 Atomic orbital electron populations 1.21817 0.92796 1.03220 1.02705 1.21318 0.98467 0.90022 1.03375 1.23638 0.94685 1.03287 0.99806 0.87535 1.86013 1.81816 1.06617 1.24342 1.23380 1.03581 0.95128 1.06656 1.20629 0.90695 0.75537 0.82788 1.90641 1.65000 1.51215 1.37570 1.47832 1.07160 1.70469 1.06648 1.19698 0.91533 0.95968 0.83215 1.21433 1.28378 0.92245 1.16129 0.95352 1.25711 0.96320 0.98312 0.96991 1.70035 1.37335 1.22430 1.27778 0.85965 0.80464 0.80227 0.78087 1.18007 1.21171 1.16230 1.21248 0.79681 0.96404 1.02387 1.22236 0.87347 0.96137 1.01103 1.62110 1.11323 1.25078 1.28279 1.22914 0.97546 1.01973 0.89227 1.22737 0.91879 0.83946 1.02444 1.87949 1.76622 1.32021 1.35515 1.22791 0.91798 1.01895 0.84719 1.22849 0.97561 0.88245 1.02290 0.92894 0.91468 0.89977 0.90564 0.89849 0.92662 0.90678 0.85862 0.93758 0.93381 0.92180 0.90646 0.91370 0.91067 0.94322 0.94179 0.89524 0.92019 0.86722 0.92082 0.86224 0.88802 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.74 71.98 0.70 -2.95 16 2 C -0.09 -2.69 5.10 30.59 0.16 -2.53 16 3 C -0.08 -2.96 1.75 29.85 0.05 -2.91 16 4 H 0.11 4.30 6.48 -2.39 -0.02 4.29 16 5 S -0.21 -7.33 19.83 -56.49 -1.12 -8.45 16 6 C -0.12 -3.95 10.65 113.37 1.21 -2.74 16 7 C 0.52 20.76 6.59 87.66 0.58 21.34 16 8 O -0.56 -24.94 15.61 -3.04 -0.05 -24.99 16 9 N -0.59 -23.06 2.47 -826.15 -2.04 -25.10 16 10 C 0.22 8.93 3.87 85.63 0.33 9.27 16 11 C -0.54 -27.88 9.28 25.60 0.24 -27.64 16 12 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 13 C 0.03 1.38 5.47 84.66 0.46 1.84 16 14 N -0.94 -53.89 13.96 21.44 0.30 -53.59 16 15 Si 0.93 38.09 27.37 68.60 1.88 39.97 16 16 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 17 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.24 -8.75 6.69 99.48 0.67 -8.09 16 19 C 0.13 4.44 5.36 86.38 0.46 4.90 16 20 C 0.06 1.77 5.28 86.30 0.46 2.23 16 21 N -0.54 -13.96 4.73 -895.22 -4.23 -18.19 16 22 C 0.01 0.27 5.44 86.31 0.47 0.74 16 23 C 0.07 1.38 7.01 72.01 0.50 1.88 16 24 O -0.40 -9.08 10.83 -148.98 -1.61 -10.69 16 25 C 0.06 1.20 7.01 72.01 0.50 1.70 16 26 C 0.02 0.39 5.64 86.31 0.49 0.88 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.68 7.13 -2.38 -0.02 1.66 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 2.29 6.88 -2.39 -0.02 2.28 16 32 H 0.05 2.08 8.06 -2.39 -0.02 2.06 16 33 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.04 1.74 7.44 -2.38 -0.02 1.72 16 36 H 0.05 1.85 4.43 -2.39 -0.01 1.83 16 37 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 38 H 0.08 2.65 6.44 -2.39 -0.02 2.64 16 39 H 0.07 2.62 7.35 -2.39 -0.02 2.60 16 40 H 0.07 2.16 8.04 -2.39 -0.02 2.14 16 41 H 0.04 1.11 8.12 -2.38 -0.02 1.09 16 42 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 2.16 6.38 -2.39 -0.02 2.15 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 48 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 49 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -63.91 394.67 0.61 -63.31 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.87 Total: 31.73 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.61 Total: 6.01 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -5.97 Total: -96.88 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.66 Total: -35.68 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.88 Total: 39.97 kcal Atomic # 16 Polarization: -7.33 SS G_CDS: -1.12 Total: -8.45 kcal Total: -63.91 0.61 -63.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128899536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.840 kcal (2) G-P(sol) polarization free energy of solvation -63.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds