Wall clock time and date at job start Tue Mar 31 2020 18:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46890 * 110.99810 * 2 1 4 4 C 1.52793 * 109.46015 * 187.14448 * 3 2 1 5 5 N 1.47130 * 108.73105 * 306.37370 * 4 3 2 6 6 S 1.65601 * 120.90061 * 230.99744 * 5 4 3 7 7 O 1.42094 * 104.27797 * 151.36636 * 6 5 4 8 8 O 1.42106 * 104.27452 * 23.50881 * 6 5 4 9 9 C 1.81400 * 104.44906 * 267.44378 * 6 5 4 10 10 C 1.53003 * 109.47138 * 186.74323 * 9 6 5 11 11 C 1.50700 * 109.47146 * 179.97438 * 10 9 6 12 12 H 1.08003 * 119.99907 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99782 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99713 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99935 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.46989 * 90.00363 * 15 13 11 17 17 H 1.48507 * 109.46673 * 209.99910 * 15 13 11 18 18 H 1.48499 * 109.47286 * 329.99872 * 15 13 11 19 19 C 1.46951 * 118.20532 * 50.72632 * 5 4 3 20 20 C 1.52844 * 109.50264 * 189.38037 * 19 5 4 21 21 C 1.53029 * 109.48281 * 299.60948 * 20 19 5 22 22 C 1.53003 * 109.46180 * 300.19587 * 21 20 19 23 23 C 1.52999 * 109.50307 * 60.04014 * 22 21 20 24 24 C 1.52879 * 109.46112 * 69.04546 * 19 5 4 25 25 C 1.46935 * 111.00286 * 124.31296 * 2 1 3 26 26 H 1.09002 * 109.47416 * 295.68585 * 1 2 3 27 27 H 1.08995 * 109.47256 * 55.69069 * 1 2 3 28 28 H 1.08999 * 109.46863 * 175.68716 * 1 2 3 29 29 H 1.08997 * 109.48863 * 307.25512 * 3 2 1 30 30 H 1.08997 * 109.48730 * 67.30002 * 3 2 1 31 31 H 1.08997 * 109.56660 * 186.57228 * 4 3 2 32 32 H 1.08994 * 109.46139 * 66.12102 * 4 3 2 33 33 H 1.09003 * 109.46552 * 306.73523 * 9 6 5 34 34 H 1.08998 * 109.47394 * 66.73726 * 9 6 5 35 35 H 1.09001 * 109.46330 * 299.99410 * 10 9 6 36 36 H 1.08998 * 109.47465 * 59.99447 * 10 9 6 37 37 H 0.97002 * 119.99928 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46819 * 59.60899 * 20 19 5 39 39 H 1.09000 * 109.46997 * 179.60386 * 20 19 5 40 40 H 1.08999 * 109.47472 * 180.19831 * 21 20 19 41 41 H 1.08991 * 109.47565 * 60.19250 * 21 20 19 42 42 H 1.09008 * 109.46600 * 300.03348 * 22 21 20 43 43 H 1.09000 * 109.46311 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.47525 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.47438 * 59.92405 * 23 22 21 46 46 H 1.08997 * 109.47100 * 180.38718 * 24 19 5 47 47 H 1.08997 * 109.47320 * 300.39349 * 24 19 5 48 48 H 1.08997 * 109.49482 * 52.96834 * 25 2 1 49 49 H 1.08998 * 109.51777 * 292.89664 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 3.5122 1.3344 -0.1792 5 7 4.0874 0.4476 0.8444 6 16 5.3409 0.9538 1.8009 7 8 5.1780 0.2222 3.0081 8 8 5.2438 2.3714 1.7846 9 6 6.8305 0.4076 0.9215 10 6 8.0614 0.6702 1.7915 11 6 9.2989 0.2159 1.0612 12 1 9.2157 -0.2172 0.0753 13 6 10.5373 0.3532 1.6516 14 7 11.6171 -0.0437 1.0144 15 14 10.6811 1.1029 3.3565 16 1 10.5884 0.0297 4.3786 17 1 11.9884 1.7960 3.4837 18 1 9.5812 2.0791 3.5624 19 6 3.5155 -0.8972 0.9991 20 6 4.0915 -1.5555 2.2525 21 6 5.6114 -1.6695 2.1166 22 6 5.9514 -2.5166 0.8887 23 6 5.3767 -1.8532 -0.3646 24 6 3.8566 -1.7401 -0.2299 25 6 1.9956 -0.7733 1.1330 26 1 -0.3634 0.4454 0.9261 27 1 -0.3633 0.5792 -0.8488 28 1 -0.3633 -1.0248 -0.0773 29 1 1.5449 1.9337 -0.8179 30 1 1.7554 1.8529 0.9479 31 1 3.9181 2.3392 -0.0631 32 1 3.7515 0.9520 -1.1714 33 1 6.7565 -0.6590 0.7092 34 1 6.9226 0.9589 -0.0143 35 1 8.1353 1.7368 2.0038 36 1 7.9693 0.1190 2.7273 37 1 12.4884 0.0532 1.4297 38 1 3.8492 -0.9491 3.1252 39 1 3.6616 -2.5502 2.3706 40 1 6.0216 -2.1421 3.0090 41 1 6.0416 -0.6746 2.0020 42 1 5.5205 -3.5114 1.0030 43 1 7.0340 -2.5982 0.7921 44 1 5.6195 -2.4568 -1.2391 45 1 5.8065 -0.8580 -0.4785 46 1 3.4267 -2.7355 -0.1184 47 1 3.4471 -1.2652 -1.1213 48 1 1.5482 -1.7672 1.1343 49 1 1.7529 -0.2640 2.0656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175313421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:59 Heat of formation + Delta-G solvation = 30.964294 kcal Electronic energy + Delta-G solvation = -30115.832023 eV Core-core repulsion = 26402.046915 eV Total energy + Delta-G solvation = -3713.785108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.75846 -38.29462 -36.30907 -35.65762 -34.52332 -33.62822 -32.14195 -31.16832 -30.37824 -28.46367 -26.60868 -25.99054 -24.05730 -22.86960 -22.26501 -21.40106 -20.12367 -20.07612 -18.20639 -17.38283 -16.96051 -15.82262 -15.78197 -15.66937 -15.44620 -15.10670 -14.94436 -14.62109 -14.50173 -14.21075 -13.77262 -13.31706 -13.18610 -12.84103 -12.69962 -12.42542 -12.21542 -12.05618 -12.00631 -11.97535 -11.86689 -11.80261 -11.50263 -11.30803 -11.27146 -11.13851 -11.06760 -10.59536 -10.46710 -10.34767 -10.18110 -9.94755 -9.84505 -9.50148 -9.46076 -9.11279 -8.91359 -8.64356 -8.41068 -6.14718 -4.15110 0.66769 2.89796 3.26635 3.34139 3.38476 3.70503 4.19614 4.37011 4.41175 4.43621 4.72335 4.87789 4.95981 4.96211 5.05396 5.15858 5.17524 5.21255 5.28314 5.35215 5.41950 5.43737 5.51176 5.52380 5.61065 5.61342 5.64608 5.65848 5.71236 5.79197 5.86934 5.97566 6.09225 6.14328 6.18317 6.30501 6.33838 6.47286 6.53518 6.62946 6.71965 6.80407 6.84352 6.85634 6.88367 6.97092 7.57167 8.39485 8.87303 9.45462 10.97693 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.004558 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.274780 B = 6140.957037 C = 6553.551057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.538 5.538 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.992 5.992 6 S 2.581 3.419 7 O -0.953 6.953 8 O -0.978 6.978 9 C -0.617 4.617 10 C -0.002 4.002 11 C -0.514 4.514 12 H 0.078 0.922 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.866 3.134 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.263 1.263 19 C 0.192 3.808 20 C -0.132 4.132 21 C -0.124 4.124 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.112 4.112 25 C 0.057 3.943 26 H 0.023 0.977 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.165 0.835 34 H 0.121 0.879 35 H 0.026 0.974 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.112 0.888 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.647 -3.024 -2.752 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.262 5.262 3 C -0.084 4.084 4 C -0.005 4.005 5 N -0.828 5.828 6 S 2.683 3.317 7 O -0.943 6.943 8 O -0.968 6.968 9 C -0.749 4.749 10 C -0.041 4.041 11 C -0.553 4.553 12 H 0.097 0.903 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.693 3.307 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.188 1.188 19 C 0.104 3.896 20 C -0.171 4.171 21 C -0.162 4.162 22 C -0.184 4.184 23 C -0.180 4.180 24 C -0.151 4.151 25 C -0.073 4.073 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.182 0.818 34 H 0.139 0.861 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.413 -2.724 -2.345 21.712 hybrid contribution 0.227 0.458 1.028 1.148 sum -21.186 -2.266 -1.317 21.348 Atomic orbital electron populations 1.22356 0.87293 1.02198 1.00400 1.61873 1.07383 1.13599 1.43377 1.22346 0.95574 0.89363 1.01124 1.21427 0.92652 0.94560 0.91899 1.57892 1.49997 1.22264 1.52696 1.06357 0.76118 0.72813 0.76418 1.93751 1.84279 1.71054 1.45222 1.93446 1.86059 1.30249 1.87034 1.31063 1.15839 1.15004 1.12955 1.19389 0.92373 0.97548 0.94819 1.20828 0.88474 1.41662 1.04330 0.90348 1.24964 0.95724 0.94748 0.97573 1.69880 0.98304 1.47063 1.38136 0.86969 0.78120 0.80426 0.85200 1.19675 1.20799 1.18773 1.20371 0.91624 0.81250 0.96324 1.22397 0.96015 1.01245 0.97478 1.22856 0.95230 0.99465 0.98665 1.21895 1.01964 0.99417 0.95095 1.21967 0.95607 1.02211 0.98215 1.21749 0.95996 0.99229 0.98121 1.22423 0.94625 0.98536 0.91689 0.95816 0.91348 0.91343 0.89678 0.94369 0.88435 0.90648 0.81777 0.86056 0.95606 0.95314 0.92445 0.87015 0.91251 0.90026 0.93023 0.91569 0.90440 0.91602 0.90559 0.91479 0.90449 0.89807 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.58 60.06 0.58 0.77 16 2 N -0.54 -5.28 4.38 -242.99 -1.07 -6.35 16 3 C 0.05 0.46 5.60 -3.94 -0.02 0.44 16 4 C 0.12 1.42 6.21 -3.80 -0.02 1.39 16 5 N -0.99 -13.67 2.28 -99.98 -0.23 -13.90 16 6 S 2.58 45.82 4.73 -107.50 -0.51 45.31 16 7 O -0.95 -17.83 11.01 -57.54 -0.63 -18.46 16 8 O -0.98 -19.89 16.54 -57.54 -0.95 -20.84 16 9 C -0.62 -11.73 3.39 37.16 0.13 -11.61 16 10 C 0.00 -0.05 3.95 -27.88 -0.11 -0.16 16 11 C -0.51 -14.20 9.66 -34.44 -0.33 -14.53 16 12 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 14 N -0.90 -26.92 13.96 55.43 0.77 -26.14 16 15 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 19 C 0.19 2.33 0.67 -131.67 -0.09 2.24 16 20 C -0.13 -1.75 4.18 -26.80 -0.11 -1.87 16 21 C -0.12 -1.92 3.98 -26.71 -0.11 -2.02 16 22 C -0.15 -2.03 4.97 -26.73 -0.13 -2.16 16 23 C -0.14 -1.82 5.44 -26.72 -0.15 -1.96 16 24 C -0.11 -1.24 4.61 -26.78 -0.12 -1.37 16 25 C 0.06 0.60 4.31 -3.76 -0.02 0.58 16 26 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.10 1.20 6.81 -51.93 -0.35 0.84 16 32 H 0.08 0.78 7.63 -51.93 -0.40 0.39 16 33 H 0.17 2.91 2.18 -51.92 -0.11 2.79 16 34 H 0.12 2.15 8.13 -51.92 -0.42 1.73 16 35 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 36 H 0.03 0.67 7.35 -51.93 -0.38 0.29 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.11 1.66 5.97 -50.43 -0.30 1.36 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 0.91 0.55 -36.37 -0.02 0.89 16 42 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 43 H 0.08 1.21 7.82 -51.93 -0.41 0.80 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 1.06 4.45 -51.93 -0.23 0.82 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.85 7.08 -51.93 -0.37 0.48 16 48 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 49 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 352.11 15.07 5.31 5.31 Total: -1.00 -32.26 352.11 -10.60 -42.86 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.02 Total: 3.65 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -0.61 Total: -28.26 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.52 Total: -46.40 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -1.59 Total: -39.31 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 45.82 SS G_CDS: -0.51 Total: 45.31 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.26 -10.60 -42.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175313421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.823 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds