Wall clock time and date at job start Tue Mar 31 2020 18:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46890 * 110.99810 * 2 1 4 4 C 1.52793 * 109.46015 * 187.14448 * 3 2 1 5 5 N 1.47130 * 108.73105 * 306.37370 * 4 3 2 6 6 S 1.65601 * 120.90061 * 230.99744 * 5 4 3 7 7 O 1.42094 * 104.27797 * 151.36636 * 6 5 4 8 8 O 1.42106 * 104.27452 * 23.50881 * 6 5 4 9 9 C 1.81400 * 104.44906 * 267.44378 * 6 5 4 10 10 C 1.53003 * 109.47138 * 186.74323 * 9 6 5 11 11 C 1.50700 * 109.47146 * 179.97438 * 10 9 6 12 12 H 1.08003 * 119.99907 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99782 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99713 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99935 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.46989 * 90.00363 * 15 13 11 17 17 H 1.48507 * 109.46673 * 209.99910 * 15 13 11 18 18 H 1.48499 * 109.47286 * 329.99872 * 15 13 11 19 19 C 1.46951 * 118.20532 * 50.72632 * 5 4 3 20 20 C 1.52844 * 109.50264 * 189.38037 * 19 5 4 21 21 C 1.53029 * 109.48281 * 299.60948 * 20 19 5 22 22 C 1.53003 * 109.46180 * 300.19587 * 21 20 19 23 23 C 1.52999 * 109.50307 * 60.04014 * 22 21 20 24 24 C 1.52879 * 109.46112 * 69.04546 * 19 5 4 25 25 C 1.46935 * 111.00286 * 124.31296 * 2 1 3 26 26 H 1.09002 * 109.47416 * 295.68585 * 1 2 3 27 27 H 1.08995 * 109.47256 * 55.69069 * 1 2 3 28 28 H 1.08999 * 109.46863 * 175.68716 * 1 2 3 29 29 H 1.08997 * 109.48863 * 307.25512 * 3 2 1 30 30 H 1.08997 * 109.48730 * 67.30002 * 3 2 1 31 31 H 1.08997 * 109.56660 * 186.57228 * 4 3 2 32 32 H 1.08994 * 109.46139 * 66.12102 * 4 3 2 33 33 H 1.09003 * 109.46552 * 306.73523 * 9 6 5 34 34 H 1.08998 * 109.47394 * 66.73726 * 9 6 5 35 35 H 1.09001 * 109.46330 * 299.99410 * 10 9 6 36 36 H 1.08998 * 109.47465 * 59.99447 * 10 9 6 37 37 H 0.97002 * 119.99928 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.46819 * 59.60899 * 20 19 5 39 39 H 1.09000 * 109.46997 * 179.60386 * 20 19 5 40 40 H 1.08999 * 109.47472 * 180.19831 * 21 20 19 41 41 H 1.08991 * 109.47565 * 60.19250 * 21 20 19 42 42 H 1.09008 * 109.46600 * 300.03348 * 22 21 20 43 43 H 1.09000 * 109.46311 * 180.02562 * 22 21 20 44 44 H 1.08998 * 109.47525 * 179.97438 * 23 22 21 45 45 H 1.09003 * 109.47438 * 59.92405 * 23 22 21 46 46 H 1.08997 * 109.47100 * 180.38718 * 24 19 5 47 47 H 1.08997 * 109.47320 * 300.39349 * 24 19 5 48 48 H 1.08997 * 109.49482 * 52.96834 * 25 2 1 49 49 H 1.08998 * 109.51777 * 292.89664 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 3.5122 1.3344 -0.1792 5 7 4.0874 0.4476 0.8444 6 16 5.3409 0.9538 1.8009 7 8 5.1780 0.2222 3.0081 8 8 5.2438 2.3714 1.7846 9 6 6.8305 0.4076 0.9215 10 6 8.0614 0.6702 1.7915 11 6 9.2989 0.2159 1.0612 12 1 9.2157 -0.2172 0.0753 13 6 10.5373 0.3532 1.6516 14 7 11.6171 -0.0437 1.0144 15 14 10.6811 1.1029 3.3565 16 1 10.5884 0.0297 4.3786 17 1 11.9884 1.7960 3.4837 18 1 9.5812 2.0791 3.5624 19 6 3.5155 -0.8972 0.9991 20 6 4.0915 -1.5555 2.2525 21 6 5.6114 -1.6695 2.1166 22 6 5.9514 -2.5166 0.8887 23 6 5.3767 -1.8532 -0.3646 24 6 3.8566 -1.7401 -0.2299 25 6 1.9956 -0.7733 1.1330 26 1 -0.3634 0.4454 0.9261 27 1 -0.3633 0.5792 -0.8488 28 1 -0.3633 -1.0248 -0.0773 29 1 1.5449 1.9337 -0.8179 30 1 1.7554 1.8529 0.9479 31 1 3.9181 2.3392 -0.0631 32 1 3.7515 0.9520 -1.1714 33 1 6.7565 -0.6590 0.7092 34 1 6.9226 0.9589 -0.0143 35 1 8.1353 1.7368 2.0038 36 1 7.9693 0.1190 2.7273 37 1 12.4884 0.0532 1.4297 38 1 3.8492 -0.9491 3.1252 39 1 3.6616 -2.5502 2.3706 40 1 6.0216 -2.1421 3.0090 41 1 6.0416 -0.6746 2.0020 42 1 5.5205 -3.5114 1.0030 43 1 7.0340 -2.5982 0.7921 44 1 5.6195 -2.4568 -1.2391 45 1 5.8065 -0.8580 -0.4785 46 1 3.4267 -2.7355 -0.1184 47 1 3.4471 -1.2652 -1.1213 48 1 1.5482 -1.7672 1.1343 49 1 1.7529 -0.2640 2.0656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175313421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:58 Heat of formation + Delta-G solvation = 8.437190 kcal Electronic energy + Delta-G solvation = -30116.808871 eV Core-core repulsion = 26402.046915 eV Total energy + Delta-G solvation = -3714.761956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.80921 -39.39228 -37.56070 -37.09896 -36.06971 -34.93463 -33.75623 -32.49842 -31.47987 -29.37335 -28.01463 -27.28265 -24.89512 -23.89494 -23.48265 -22.96605 -21.25783 -21.19849 -19.65559 -18.99657 -18.41439 -17.27977 -16.93680 -16.73799 -16.59794 -16.36469 -16.04122 -15.75289 -15.58532 -15.47991 -14.98822 -14.77717 -14.69966 -14.26675 -13.85115 -13.69862 -13.44360 -13.28983 -13.15397 -13.11401 -12.98757 -12.90742 -12.84154 -12.75176 -12.38313 -12.28203 -12.18465 -12.09615 -11.91317 -11.73485 -11.66069 -11.51928 -11.36466 -11.04744 -10.84683 -10.63585 -10.44610 -9.96230 -9.21036 -8.36563 -6.41036 -0.73402 1.28554 1.30598 1.40397 1.65922 2.27828 2.76564 2.96992 2.97386 3.12219 3.42976 3.74340 3.86756 3.88316 3.96467 4.05691 4.18683 4.21883 4.25853 4.32919 4.38076 4.46026 4.54895 4.59725 4.61865 4.71102 4.72870 4.74636 4.81637 4.82275 4.92877 5.01817 5.04095 5.06915 5.11229 5.11494 5.19521 5.20322 5.32025 5.34905 5.46279 5.49418 5.57562 5.67705 5.81859 6.06390 6.14475 6.18434 6.63951 7.22617 8.79033 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021251 B = 0.004558 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.274780 B = 6140.957037 C = 6553.551057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.539 5.539 3 C 0.048 3.952 4 C 0.111 3.889 5 N -0.983 5.983 6 S 2.601 3.399 7 O -0.964 6.964 8 O -1.007 7.007 9 C -0.623 4.623 10 C -0.006 4.006 11 C -0.518 4.518 12 H 0.050 0.950 13 C 0.017 3.983 14 N -0.938 5.938 15 Si 0.920 3.080 16 H -0.259 1.259 17 H -0.273 1.273 18 H -0.256 1.256 19 C 0.188 3.812 20 C -0.129 4.129 21 C -0.132 4.132 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.102 4.102 25 C 0.060 3.940 26 H 0.021 0.979 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.025 0.975 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.176 0.824 34 H 0.125 0.875 35 H 0.019 0.981 36 H 0.030 0.970 37 H 0.269 0.731 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.029 0.971 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.109 0.891 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.708 -3.840 -2.968 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.263 5.263 3 C -0.082 4.082 4 C -0.014 4.014 5 N -0.822 5.822 6 S 2.701 3.299 7 O -0.954 6.954 8 O -0.997 6.997 9 C -0.753 4.753 10 C -0.045 4.045 11 C -0.557 4.557 12 H 0.068 0.932 13 C -0.181 4.181 14 N -0.578 5.578 15 Si 0.743 3.257 16 H -0.184 1.184 17 H -0.198 1.198 18 H -0.180 1.180 19 C 0.101 3.899 20 C -0.168 4.168 21 C -0.171 4.171 22 C -0.180 4.180 23 C -0.183 4.183 24 C -0.140 4.140 25 C -0.070 4.070 26 H 0.039 0.961 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.043 0.957 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.193 0.807 34 H 0.143 0.857 35 H 0.037 0.963 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.109 0.891 47 H 0.103 0.897 48 H 0.127 0.873 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -24.463 -3.537 -2.565 24.850 hybrid contribution 1.115 0.646 1.017 1.642 sum -23.347 -2.891 -1.549 23.576 Atomic orbital electron populations 1.22425 0.85650 1.03308 1.00811 1.61905 1.08774 1.12946 1.42716 1.22349 0.94238 0.90106 1.01471 1.21685 0.93870 0.93826 0.91980 1.57642 1.48205 1.23569 1.52824 1.05596 0.76001 0.71879 0.76385 1.93764 1.84334 1.71051 1.46258 1.93403 1.86514 1.32217 1.87560 1.31107 1.15404 1.16166 1.12579 1.19283 0.93007 0.96794 0.95370 1.21092 0.90284 1.40864 1.03503 0.93199 1.25790 0.95479 0.95373 1.01489 1.70000 0.98956 1.48753 1.40054 0.86106 0.78650 0.80182 0.80788 1.18370 1.19757 1.17961 1.20604 0.92802 0.80161 0.96351 1.22329 0.94359 1.02789 0.97373 1.22869 0.96958 0.98297 0.98927 1.21854 1.00453 1.00672 0.95054 1.21977 0.97029 1.01314 0.97950 1.21702 0.94386 1.00290 0.97648 1.22411 0.93077 0.99949 0.91582 0.96057 0.90170 0.90041 0.87234 0.95672 0.89422 0.88874 0.80676 0.85689 0.96264 0.95186 0.92151 0.88785 0.88197 0.91150 0.95319 0.88974 0.93266 0.90448 0.92260 0.89080 0.89654 0.87313 0.95333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.58 127.69 1.22 1.52 16 2 N -0.54 -8.61 4.38 -922.67 -4.04 -12.65 16 3 C 0.05 0.85 5.60 86.24 0.48 1.34 16 4 C 0.11 2.43 6.21 86.19 0.54 2.96 16 5 N -0.98 -25.81 2.28 -470.23 -1.07 -26.88 16 6 S 2.60 92.66 4.73 -56.49 -0.27 92.39 16 7 O -0.96 -36.19 11.01 -127.65 -1.41 -37.59 16 8 O -1.01 -41.40 16.54 -127.65 -2.11 -43.51 16 9 C -0.62 -24.32 3.39 71.98 0.24 -24.08 16 10 C -0.01 -0.27 3.95 29.85 0.12 -0.16 16 11 C -0.52 -29.72 9.66 25.60 0.25 -29.47 16 12 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 13 C 0.02 1.01 5.47 84.65 0.46 1.48 16 14 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 15 Si 0.92 44.67 27.47 68.60 1.88 46.56 16 16 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.26 -12.00 6.54 99.48 0.65 -11.35 16 19 C 0.19 4.06 0.67 3.45 0.00 4.07 16 20 C -0.13 -3.17 4.18 30.55 0.13 -3.04 16 21 C -0.13 -4.01 3.98 30.60 0.12 -3.89 16 22 C -0.14 -3.82 4.97 30.59 0.15 -3.66 16 23 C -0.15 -3.44 5.44 30.60 0.17 -3.28 16 24 C -0.10 -1.89 4.61 30.56 0.14 -1.75 16 25 C 0.06 1.05 4.31 86.33 0.37 1.42 16 26 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.11 1.42 8.06 -2.39 -0.02 1.40 16 30 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 2.09 6.81 -2.39 -0.02 2.08 16 32 H 0.09 1.70 7.63 -2.39 -0.02 1.69 16 33 H 0.18 6.38 2.18 -2.39 -0.01 6.37 16 34 H 0.12 4.61 8.13 -2.39 -0.02 4.59 16 35 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 36 H 0.03 1.44 7.35 -2.39 -0.02 1.42 16 37 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 38 H 0.09 2.69 5.97 -3.90 -0.02 2.67 16 39 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.03 1.03 0.55 -109.21 -0.06 0.97 16 42 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 43 H 0.05 1.57 7.82 -2.39 -0.02 1.56 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 45 H 0.06 1.60 4.45 -2.39 -0.01 1.59 16 46 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.08 1.52 7.08 -2.39 -0.02 1.50 16 48 H 0.11 1.41 8.11 -2.39 -0.02 1.39 16 49 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -71.46 352.11 -1.50 -72.96 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.82 Total: 22.94 kcal Atomic # 6 Polarization: -60.95 SS G_CDS: 4.40 Total: -56.55 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -4.82 Total: -97.20 kcal Atomic # 8 Polarization: -77.58 SS G_CDS: -3.52 Total: -81.10 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Atomic # 16 Polarization: 92.66 SS G_CDS: -0.27 Total: 92.39 kcal Total: -71.46 -1.50 -72.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175313421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.401 kcal (2) G-P(sol) polarization free energy of solvation -71.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds