Wall clock time and date at job start Tue Mar 31 2020 17:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47055 * 2 1 4 4 C 1.53007 * 109.46671 * 240.00352 * 2 1 3 5 5 N 1.46901 * 109.47057 * 184.99903 * 4 2 1 6 6 C 1.46846 * 110.99850 * 294.21297 * 5 4 2 7 7 C 1.53037 * 109.52139 * 174.15887 * 6 5 4 8 8 C 1.53123 * 109.28149 * 59.18042 * 7 6 5 9 9 C 1.53128 * 109.15390 * 302.34602 * 8 7 6 10 10 C 1.46843 * 110.99963 * 169.99957 * 5 4 2 11 11 N 1.46491 * 109.47181 * 120.00713 * 2 1 3 12 12 S 1.65601 * 120.00069 * 264.99453 * 11 2 1 13 13 O 1.42098 * 104.27794 * 308.93453 * 12 11 2 14 14 O 1.42098 * 104.27820 * 181.06901 * 12 11 2 15 15 C 1.81407 * 104.44612 * 65.00248 * 12 11 2 16 16 C 1.53000 * 109.47091 * 174.34737 * 15 12 11 17 17 C 1.50702 * 115.55070 * 295.23001 * 16 15 12 18 18 H 1.07993 * 120.00226 * 95.16158 * 17 16 15 19 19 C 1.37882 * 119.99822 * 274.88891 * 17 16 15 20 20 N 1.31515 * 119.99551 * 6.44628 * 19 17 16 21 21 Si 1.86792 * 120.00141 * 186.44700 * 19 17 16 22 22 H 1.48500 * 109.47156 * 89.99648 * 21 19 17 23 23 H 1.48496 * 109.47324 * 210.00192 * 21 19 17 24 24 H 1.48504 * 109.47240 * 330.00108 * 21 19 17 25 25 C 1.52998 * 117.49864 * 80.89449 * 16 15 12 26 26 C 1.52998 * 117.50210 * 149.55494 * 16 15 12 27 27 H 1.09002 * 109.46854 * 299.99548 * 1 2 3 28 28 H 1.09005 * 109.47225 * 59.99435 * 1 2 3 29 29 H 1.09000 * 109.47549 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47086 * 304.99814 * 4 2 1 31 31 H 1.09003 * 109.46712 * 65.00356 * 4 2 1 32 32 H 1.09003 * 109.46437 * 294.17157 * 6 5 4 33 33 H 1.08998 * 109.46443 * 54.14435 * 6 5 4 34 34 H 1.09005 * 109.50631 * 299.23744 * 7 6 5 35 35 H 1.09004 * 109.50702 * 179.11985 * 7 6 5 36 36 H 1.08996 * 109.52354 * 182.44370 * 8 7 6 37 37 H 1.09001 * 109.57158 * 62.27640 * 8 7 6 38 38 H 1.08998 * 109.49984 * 297.70909 * 9 8 7 39 39 H 1.09005 * 109.49862 * 177.59295 * 9 8 7 40 40 H 1.08995 * 109.46534 * 305.85889 * 10 5 4 41 41 H 1.09006 * 109.46166 * 65.82694 * 10 5 4 42 42 H 0.97001 * 120.00549 * 84.99641 * 11 2 1 43 43 H 1.08995 * 109.46970 * 54.34720 * 15 12 11 44 44 H 1.09000 * 109.46775 * 294.34286 * 15 12 11 45 45 H 0.97003 * 119.99746 * 185.04386 * 20 19 17 46 46 H 1.09007 * 117.50251 * 215.00100 * 25 16 15 47 47 H 1.09003 * 117.50010 * 0.02562 * 25 16 15 48 48 H 1.09008 * 117.49227 * 359.97438 * 26 16 15 49 49 H 1.08996 * 117.50141 * 144.97145 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5040 -0.8267 -1.1906 6 6 4.1305 0.4993 -1.2660 7 6 5.6404 0.3641 -1.0562 8 6 6.2201 -0.5568 -2.1334 9 6 5.5167 -1.9153 -2.0648 10 6 4.0104 -1.7140 -2.2454 11 7 2.0183 -0.6907 1.1960 12 16 2.4123 0.1769 2.5504 13 8 3.2876 1.1904 2.0750 14 8 2.8607 -0.8033 3.4764 15 6 0.8409 0.8986 3.0985 16 6 1.0476 1.6165 4.4337 17 6 1.4276 0.7337 5.5944 18 1 2.4672 0.6044 5.8569 19 6 0.4477 0.0954 6.3248 20 7 -0.8067 0.1536 5.9340 21 14 0.9018 -0.8520 7.8693 22 1 0.8377 0.0552 9.0433 23 1 -0.0508 -1.9752 8.0591 24 1 2.2796 -1.3890 7.7335 25 6 1.6426 3.0255 4.3935 26 6 0.1620 2.8288 4.7286 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -1.7198 -1.2953 31 1 1.7516 -0.1581 -2.1370 32 1 3.9377 0.9370 -2.2455 33 1 3.7125 1.1430 -0.4920 34 1 5.8344 -0.0608 -0.0713 35 1 6.1072 1.3465 -1.1277 36 1 7.2882 -0.6906 -1.9621 37 1 6.0615 -0.1137 -3.1166 38 1 5.7088 -2.3759 -1.0958 39 1 5.8951 -2.5613 -2.8570 40 1 3.5052 -2.6778 -2.1828 41 1 3.8181 -1.2659 -3.2203 42 1 2.1110 -1.6563 1.1947 43 1 0.1013 0.1076 3.2220 44 1 0.4891 1.6119 2.3532 45 1 -1.5049 -0.2325 6.4856 46 1 2.3088 3.3140 5.2067 47 1 1.8864 3.4412 3.4158 48 1 -0.5677 3.1151 3.9711 49 1 -0.1462 2.9875 5.7620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331551934.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:17 Heat of formation + Delta-G solvation = -58.992357 kcal Electronic energy + Delta-G solvation = -28363.317064 eV Core-core repulsion = 24645.631143 eV Total energy + Delta-G solvation = -3717.685921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.24551 -36.72841 -36.50315 -35.96454 -34.93789 -32.90945 -31.98390 -30.84552 -29.77008 -28.16428 -26.37663 -25.37789 -23.42032 -22.92156 -21.21355 -20.84581 -19.78064 -19.63554 -18.58674 -16.98536 -16.43210 -16.25282 -15.73864 -14.99979 -14.92014 -14.67514 -14.48215 -14.42521 -14.19003 -13.80309 -13.58517 -13.49075 -13.22239 -12.96882 -12.65018 -12.32798 -11.98623 -11.85843 -11.83479 -11.71666 -11.23918 -11.21215 -11.18694 -11.07910 -10.96843 -10.88178 -10.82177 -10.68742 -10.51471 -10.44209 -10.42032 -10.19461 -10.04566 -9.68101 -9.07393 -8.90855 -8.50458 -8.29951 -8.05238 -6.09416 -4.17842 1.22166 3.33169 3.39563 3.48817 3.53837 3.84309 4.43148 4.60949 4.71502 4.75280 4.85305 4.89409 5.08045 5.10149 5.17951 5.19672 5.21867 5.26804 5.36612 5.39787 5.49143 5.51848 5.56331 5.59353 5.67412 5.75097 5.81503 5.88063 5.89189 5.93820 5.99873 6.11127 6.19662 6.23491 6.30584 6.35228 6.39256 6.46651 6.64482 6.71872 7.00641 7.06890 7.10647 7.27573 7.40870 7.53792 7.86847 8.25124 8.88562 9.52694 10.99120 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.003674 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.156558 B = 7618.976052 C = 7807.145829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.150 3.850 3 H 0.086 0.914 4 C 0.054 3.946 5 N -0.530 5.530 6 C 0.049 3.951 7 C -0.117 4.117 8 C -0.121 4.121 9 C -0.118 4.118 10 C 0.057 3.943 11 N -1.110 6.110 12 S 2.609 3.391 13 O -0.978 6.978 14 O -0.947 6.947 15 C -0.558 4.558 16 C 0.044 3.956 17 C -0.504 4.504 18 H 0.070 0.930 19 C 0.079 3.921 20 N -0.877 5.877 21 Si 0.889 3.111 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.214 4.214 26 C -0.140 4.140 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.026 0.974 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.413 0.587 43 H 0.133 0.867 44 H 0.095 0.905 45 H 0.261 0.739 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 -1.391 -18.180 18.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.041 3.959 3 H 0.104 0.896 4 C -0.075 4.075 5 N -0.255 5.255 6 C -0.078 4.078 7 C -0.154 4.154 8 C -0.159 4.159 9 C -0.155 4.155 10 C -0.071 4.071 11 N -0.867 5.867 12 S 2.706 3.294 13 O -0.968 6.968 14 O -0.937 6.937 15 C -0.691 4.691 16 C 0.041 3.959 17 C -0.542 4.542 18 H 0.088 0.912 19 C -0.125 4.125 20 N -0.513 5.513 21 Si 0.716 3.284 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.251 4.251 26 C -0.179 4.179 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.246 0.754 43 H 0.152 0.848 44 H 0.114 0.886 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.295 -1.474 -17.384 18.232 hybrid contribution -0.996 -0.452 -0.106 1.100 sum 4.298 -1.927 -17.490 18.113 Atomic orbital electron populations 1.22464 0.95370 1.03192 1.02926 1.20713 0.93164 0.96597 0.85378 0.89579 1.22355 0.87975 1.01032 0.96153 1.61795 1.04679 1.12106 1.46897 1.22223 0.95308 0.90145 1.00154 1.21556 0.94575 0.99461 0.99854 1.21595 0.99557 0.95869 0.98852 1.21587 0.94300 0.97258 1.02395 1.22069 0.95953 0.96952 0.92146 1.55710 1.84244 1.19590 1.27109 1.05015 0.77516 0.74582 0.72331 1.93472 1.62341 1.61021 1.79980 1.93560 1.79788 1.58742 1.61658 1.30123 1.20760 1.11537 1.06658 1.18310 1.00817 0.86071 0.90656 1.20561 0.93801 1.27167 1.12637 0.91209 1.24926 0.94929 0.95042 0.97631 1.70017 0.99668 1.44942 1.36705 0.86608 0.79125 0.79651 0.83009 1.20566 1.21115 1.19075 1.23239 0.97604 1.03172 1.01125 1.22524 0.90734 1.03899 1.00763 0.91143 0.91766 0.91640 0.90173 0.94043 0.95544 0.89029 0.90700 0.91638 0.92027 0.92659 0.90903 0.91922 0.90961 0.95371 0.75400 0.84850 0.88622 0.92925 0.89542 0.90721 0.91609 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.48 37.16 0.35 -1.60 16 2 C 0.15 1.86 2.59 -67.93 -0.18 1.68 16 3 H 0.09 1.12 6.00 -51.93 -0.31 0.81 16 4 C 0.05 0.57 4.58 -3.82 -0.02 0.55 16 5 N -0.53 -6.28 4.38 -234.67 -1.03 -7.30 16 6 C 0.05 0.61 5.29 -3.83 -0.02 0.59 16 7 C -0.12 -1.40 6.09 -26.65 -0.16 -1.56 16 8 C -0.12 -1.18 6.00 -26.60 -0.16 -1.34 16 9 C -0.12 -1.12 6.09 -26.65 -0.16 -1.29 16 10 C 0.06 0.56 5.46 -3.84 -0.02 0.54 16 11 N -1.11 -16.82 5.08 -4.89 -0.02 -16.84 16 12 S 2.61 52.67 5.33 -107.50 -0.57 52.09 16 13 O -0.98 -20.78 16.90 -57.54 -0.97 -21.75 16 14 O -0.95 -23.15 17.10 -57.54 -0.98 -24.14 16 15 C -0.56 -11.62 4.88 37.16 0.18 -11.44 16 16 C 0.04 1.06 1.34 -155.66 -0.21 0.86 16 17 C -0.50 -13.89 7.66 -34.44 -0.26 -14.16 16 18 H 0.07 1.99 7.82 -52.49 -0.41 1.58 16 19 C 0.08 2.16 5.39 -17.82 -0.10 2.07 16 20 N -0.88 -24.19 12.93 55.43 0.72 -23.48 16 21 Si 0.89 21.60 29.55 -169.99 -5.02 16.58 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.21 -4.69 9.96 -26.70 -0.27 -4.96 16 26 C -0.14 -3.19 9.44 -26.70 -0.25 -3.44 16 27 H 0.07 0.86 5.97 -51.93 -0.31 0.55 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.75 7.99 -51.93 -0.41 0.33 16 31 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 1.32 5.82 -51.93 -0.30 1.02 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 41 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.41 5.80 8.80 -34.47 -0.30 5.50 16 43 H 0.13 2.89 8.14 -51.93 -0.42 2.47 16 44 H 0.10 1.68 7.11 -51.92 -0.37 1.31 16 45 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 46 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 47 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 48 H 0.07 1.37 8.14 -51.92 -0.42 0.94 16 49 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -32.21 392.92 -11.97 -44.18 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.74 Total: 8.23 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: -1.27 Total: -33.48 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.34 Total: -47.63 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -1.96 Total: -45.89 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 52.67 SS G_CDS: -0.57 Total: 52.09 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.21 -11.97 -44.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331551934.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.813 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds