Wall clock time and date at job start Tue Mar 31 2020 17:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47055 * 2 1 4 4 C 1.53007 * 109.46671 * 240.00352 * 2 1 3 5 5 N 1.46901 * 109.47057 * 184.99903 * 4 2 1 6 6 C 1.46846 * 110.99850 * 294.21297 * 5 4 2 7 7 C 1.53037 * 109.52139 * 174.15887 * 6 5 4 8 8 C 1.53123 * 109.28149 * 59.18042 * 7 6 5 9 9 C 1.53128 * 109.15390 * 302.34602 * 8 7 6 10 10 C 1.46843 * 110.99963 * 169.99957 * 5 4 2 11 11 N 1.46491 * 109.47181 * 120.00713 * 2 1 3 12 12 S 1.65601 * 120.00069 * 264.99453 * 11 2 1 13 13 O 1.42098 * 104.27794 * 308.93453 * 12 11 2 14 14 O 1.42098 * 104.27820 * 181.06901 * 12 11 2 15 15 C 1.81407 * 104.44612 * 65.00248 * 12 11 2 16 16 C 1.53000 * 109.47091 * 174.34737 * 15 12 11 17 17 C 1.50702 * 115.55070 * 295.23001 * 16 15 12 18 18 H 1.07993 * 120.00226 * 95.16158 * 17 16 15 19 19 C 1.37882 * 119.99822 * 274.88891 * 17 16 15 20 20 N 1.31515 * 119.99551 * 6.44628 * 19 17 16 21 21 Si 1.86792 * 120.00141 * 186.44700 * 19 17 16 22 22 H 1.48500 * 109.47156 * 89.99648 * 21 19 17 23 23 H 1.48496 * 109.47324 * 210.00192 * 21 19 17 24 24 H 1.48504 * 109.47240 * 330.00108 * 21 19 17 25 25 C 1.52998 * 117.49864 * 80.89449 * 16 15 12 26 26 C 1.52998 * 117.50210 * 149.55494 * 16 15 12 27 27 H 1.09002 * 109.46854 * 299.99548 * 1 2 3 28 28 H 1.09005 * 109.47225 * 59.99435 * 1 2 3 29 29 H 1.09000 * 109.47549 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47086 * 304.99814 * 4 2 1 31 31 H 1.09003 * 109.46712 * 65.00356 * 4 2 1 32 32 H 1.09003 * 109.46437 * 294.17157 * 6 5 4 33 33 H 1.08998 * 109.46443 * 54.14435 * 6 5 4 34 34 H 1.09005 * 109.50631 * 299.23744 * 7 6 5 35 35 H 1.09004 * 109.50702 * 179.11985 * 7 6 5 36 36 H 1.08996 * 109.52354 * 182.44370 * 8 7 6 37 37 H 1.09001 * 109.57158 * 62.27640 * 8 7 6 38 38 H 1.08998 * 109.49984 * 297.70909 * 9 8 7 39 39 H 1.09005 * 109.49862 * 177.59295 * 9 8 7 40 40 H 1.08995 * 109.46534 * 305.85889 * 10 5 4 41 41 H 1.09006 * 109.46166 * 65.82694 * 10 5 4 42 42 H 0.97001 * 120.00549 * 84.99641 * 11 2 1 43 43 H 1.08995 * 109.46970 * 54.34720 * 15 12 11 44 44 H 1.09000 * 109.46775 * 294.34286 * 15 12 11 45 45 H 0.97003 * 119.99746 * 185.04386 * 20 19 17 46 46 H 1.09007 * 117.50251 * 215.00100 * 25 16 15 47 47 H 1.09003 * 117.50010 * 0.02562 * 25 16 15 48 48 H 1.09008 * 117.49227 * 359.97438 * 26 16 15 49 49 H 1.08996 * 117.50141 * 144.97145 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5040 -0.8267 -1.1906 6 6 4.1305 0.4993 -1.2660 7 6 5.6404 0.3641 -1.0562 8 6 6.2201 -0.5568 -2.1334 9 6 5.5167 -1.9153 -2.0648 10 6 4.0104 -1.7140 -2.2454 11 7 2.0183 -0.6907 1.1960 12 16 2.4123 0.1769 2.5504 13 8 3.2876 1.1904 2.0750 14 8 2.8607 -0.8033 3.4764 15 6 0.8409 0.8986 3.0985 16 6 1.0476 1.6165 4.4337 17 6 1.4276 0.7337 5.5944 18 1 2.4672 0.6044 5.8569 19 6 0.4477 0.0954 6.3248 20 7 -0.8067 0.1536 5.9340 21 14 0.9018 -0.8520 7.8693 22 1 0.8377 0.0552 9.0433 23 1 -0.0508 -1.9752 8.0591 24 1 2.2796 -1.3890 7.7335 25 6 1.6426 3.0255 4.3935 26 6 0.1620 2.8288 4.7286 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6053 -1.7198 -1.2953 31 1 1.7516 -0.1581 -2.1370 32 1 3.9377 0.9370 -2.2455 33 1 3.7125 1.1430 -0.4920 34 1 5.8344 -0.0608 -0.0713 35 1 6.1072 1.3465 -1.1277 36 1 7.2882 -0.6906 -1.9621 37 1 6.0615 -0.1137 -3.1166 38 1 5.7088 -2.3759 -1.0958 39 1 5.8951 -2.5613 -2.8570 40 1 3.5052 -2.6778 -2.1828 41 1 3.8181 -1.2659 -3.2203 42 1 2.1110 -1.6563 1.1947 43 1 0.1013 0.1076 3.2220 44 1 0.4891 1.6119 2.3532 45 1 -1.5049 -0.2325 6.4856 46 1 2.3088 3.3140 5.2067 47 1 1.8864 3.4412 3.4158 48 1 -0.5677 3.1151 3.9711 49 1 -0.1462 2.9875 5.7620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331551934.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:15 Heat of formation + Delta-G solvation = -81.272907 kcal Electronic energy + Delta-G solvation = -28364.283221 eV Core-core repulsion = 24645.631143 eV Total energy + Delta-G solvation = -3718.652078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.10872 -38.55344 -37.89570 -37.29696 -36.66515 -34.05203 -33.82475 -31.68398 -30.85125 -29.83364 -27.52959 -27.12060 -24.29561 -23.75426 -22.99673 -21.82475 -21.48866 -20.58434 -20.15002 -18.47795 -18.31298 -17.30967 -16.88698 -16.76724 -16.51863 -16.01554 -15.66239 -15.55283 -15.39984 -15.18351 -14.94866 -14.48670 -14.37227 -13.88496 -13.84896 -13.61787 -13.53218 -13.18376 -13.12165 -12.91641 -12.82427 -12.80675 -12.80188 -12.68771 -12.41187 -12.27218 -12.19253 -12.08314 -11.90306 -11.84859 -11.58091 -11.52053 -11.22262 -11.06465 -10.84584 -10.53774 -10.33272 -9.83433 -9.12061 -8.17413 -6.29622 -0.38453 1.38030 1.40846 1.52173 2.14283 2.42470 2.98463 3.07564 3.11728 3.37570 3.55311 3.76677 3.94377 4.01140 4.06211 4.09936 4.21833 4.26942 4.33682 4.38107 4.50106 4.51211 4.55495 4.61942 4.67784 4.70556 4.75353 4.80519 4.84954 4.88582 4.96359 4.98282 5.01011 5.09736 5.11505 5.21891 5.26130 5.32622 5.38443 5.42272 5.50957 5.51623 5.59154 5.75412 6.20564 6.25288 6.29579 6.37160 6.76131 7.41739 8.90435 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.003674 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.156558 B = 7618.976052 C = 7807.145829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.142 3.858 3 H 0.079 0.921 4 C 0.057 3.943 5 N -0.551 5.551 6 C 0.050 3.950 7 C -0.121 4.121 8 C -0.116 4.116 9 C -0.118 4.118 10 C 0.057 3.943 11 N -1.097 6.097 12 S 2.624 3.376 13 O -0.992 6.992 14 O -0.998 6.998 15 C -0.552 4.552 16 C 0.010 3.990 17 C -0.523 4.523 18 H 0.046 0.954 19 C 0.041 3.959 20 N -0.893 5.893 21 Si 0.932 3.068 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.278 1.278 25 C -0.202 4.202 26 C -0.136 4.136 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.419 0.581 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.264 0.736 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.775 -1.518 -20.701 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.035 3.965 3 H 0.097 0.903 4 C -0.072 4.072 5 N -0.276 5.276 6 C -0.078 4.078 7 C -0.159 4.159 8 C -0.154 4.154 9 C -0.156 4.156 10 C -0.071 4.071 11 N -0.857 5.857 12 S 2.721 3.279 13 O -0.982 6.982 14 O -0.988 6.988 15 C -0.684 4.684 16 C 0.008 3.992 17 C -0.560 4.560 18 H 0.064 0.936 19 C -0.161 4.161 20 N -0.530 5.530 21 Si 0.758 3.242 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.203 1.203 25 C -0.240 4.240 26 C -0.175 4.175 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.254 0.746 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.117 0.883 48 H 0.106 0.894 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.600 -1.596 -19.899 20.486 hybrid contribution -0.751 -0.391 0.613 1.045 sum 3.849 -1.987 -19.286 19.767 Atomic orbital electron populations 1.22452 0.93808 1.03998 1.03510 1.21025 0.94378 0.96261 0.84853 0.90309 1.22375 0.87273 1.01966 0.95573 1.61770 1.05523 1.11991 1.48367 1.22142 0.95185 0.90414 1.00055 1.21573 0.95023 1.00103 0.99153 1.21564 0.99747 0.95530 0.98527 1.21608 0.94547 0.97301 1.02141 1.22125 0.95886 0.97010 0.92045 1.55267 1.84189 1.19662 1.26552 1.04270 0.77191 0.74007 0.72467 1.93450 1.62925 1.61654 1.80189 1.93487 1.80908 1.60216 1.64195 1.29991 1.20784 1.11779 1.05856 1.18443 1.02716 0.86733 0.91322 1.20695 0.92789 1.28168 1.14351 0.93587 1.25466 0.95102 0.95820 0.99755 1.70054 0.99942 1.45592 1.37365 0.85940 0.78277 0.79075 0.80909 1.19393 1.20090 1.20319 1.23286 0.97056 1.01404 1.02221 1.22482 0.91622 1.03007 1.00367 0.92662 0.89041 0.90789 0.88651 0.91827 0.93908 0.91548 0.93739 0.91269 0.91499 0.91225 0.92806 0.89798 0.89982 0.94066 0.74584 0.85906 0.85370 0.92697 0.89939 0.88311 0.89353 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 9.48 71.98 0.68 -2.70 16 2 C 0.14 3.25 2.59 45.00 0.12 3.36 16 3 H 0.08 1.94 6.00 -2.39 -0.01 1.93 16 4 C 0.06 1.04 4.58 86.31 0.40 1.43 16 5 N -0.55 -12.05 4.38 -896.35 -3.93 -15.97 16 6 C 0.05 1.18 5.29 86.33 0.46 1.64 16 7 C -0.12 -2.85 6.09 30.65 0.19 -2.66 16 8 C -0.12 -2.07 6.00 30.68 0.18 -1.89 16 9 C -0.12 -2.04 6.09 30.65 0.19 -1.85 16 10 C 0.06 0.96 5.46 86.33 0.47 1.44 16 11 N -1.10 -32.54 5.08 -169.39 -0.86 -33.40 16 12 S 2.62 107.01 5.33 -56.49 -0.30 106.71 16 13 O -0.99 -42.51 16.90 -127.65 -2.16 -44.66 16 14 O -1.00 -50.44 17.10 -127.65 -2.18 -52.62 16 15 C -0.55 -22.74 4.88 71.98 0.35 -22.39 16 16 C 0.01 0.49 1.34 -52.93 -0.07 0.41 16 17 C -0.52 -29.45 7.66 25.60 0.20 -29.25 16 18 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 19 C 0.04 2.26 5.39 84.66 0.46 2.72 16 20 N -0.89 -49.42 12.93 21.45 0.28 -49.14 16 21 Si 0.93 44.76 29.55 68.60 2.03 46.79 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 25 C -0.20 -8.74 9.96 30.62 0.30 -8.44 16 26 C -0.14 -6.09 9.44 30.62 0.29 -5.80 16 27 H 0.05 1.22 5.97 -2.39 -0.01 1.21 16 28 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 1.45 7.99 -2.39 -0.02 1.43 16 31 H 0.06 0.91 8.12 -2.39 -0.02 0.90 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.89 5.82 -2.39 -0.01 1.88 16 34 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.08 1.23 8.01 -2.39 -0.02 1.21 16 41 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.42 11.55 8.80 -96.75 -0.85 10.70 16 43 H 0.12 5.33 8.14 -2.39 -0.02 5.31 16 44 H 0.13 4.30 7.11 -2.39 -0.02 4.28 16 45 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 46 H 0.08 3.57 8.14 -2.38 -0.02 3.55 16 47 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 48 H 0.09 3.51 8.14 -2.38 -0.02 3.49 16 49 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -70.45 392.92 -2.85 -73.30 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: 0.07 Total: 32.97 kcal Atomic # 6 Polarization: -68.18 SS G_CDS: 4.21 Total: -63.97 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -4.51 Total: -98.51 kcal Atomic # 8 Polarization: -92.95 SS G_CDS: -4.34 Total: -97.29 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 107.01 SS G_CDS: -0.30 Total: 106.71 kcal Total: -70.45 -2.85 -73.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331551934.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.975 kcal (2) G-P(sol) polarization free energy of solvation -70.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds