Wall clock time and date at job start Tue Mar 31 2020 17:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47388 * 2 1 4 4 C 1.53001 * 109.47336 * 120.00176 * 2 1 3 5 5 N 1.46902 * 109.47002 * 176.55916 * 4 2 1 6 6 C 1.46854 * 110.99952 * 200.08220 * 5 4 2 7 7 C 1.53039 * 109.52350 * 174.16079 * 6 5 4 8 8 C 1.53120 * 109.27549 * 59.17904 * 7 6 5 9 9 C 1.53117 * 109.16158 * 302.34609 * 8 7 6 10 10 C 1.46843 * 110.99959 * 75.87317 * 5 4 2 11 11 N 1.46507 * 109.46839 * 240.00103 * 2 1 3 12 12 S 1.65598 * 119.99565 * 94.83105 * 11 2 1 13 13 O 1.42098 * 104.27841 * 308.92527 * 12 11 2 14 14 O 1.42099 * 104.27683 * 181.07085 * 12 11 2 15 15 C 1.81403 * 104.45256 * 65.00100 * 12 11 2 16 16 C 1.53004 * 109.46968 * 185.57742 * 15 12 11 17 17 C 1.50690 * 115.55222 * 304.02089 * 16 15 12 18 18 H 1.08005 * 120.00314 * 99.49949 * 17 16 15 19 19 C 1.37878 * 120.00128 * 279.22483 * 17 16 15 20 20 N 1.31516 * 119.99900 * 355.39619 * 19 17 16 21 21 Si 1.86800 * 120.00423 * 175.39627 * 19 17 16 22 22 H 1.48504 * 109.46803 * 59.99880 * 21 19 17 23 23 H 1.48499 * 109.47321 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46887 * 300.00070 * 21 19 17 25 25 C 1.52997 * 117.51430 * 89.72672 * 16 15 12 26 26 C 1.52998 * 60.00335 * 107.47654 * 25 16 15 27 27 H 1.08995 * 109.47388 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46908 * 299.99791 * 1 2 3 29 29 H 1.09002 * 109.47594 * 59.99411 * 1 2 3 30 30 H 1.08992 * 109.47239 * 296.55971 * 4 2 1 31 31 H 1.09003 * 109.46972 * 56.56101 * 4 2 1 32 32 H 1.09003 * 109.46001 * 294.17975 * 6 5 4 33 33 H 1.09002 * 109.45706 * 54.14491 * 6 5 4 34 34 H 1.08994 * 109.50008 * 299.24004 * 7 6 5 35 35 H 1.08999 * 109.50167 * 179.11748 * 7 6 5 36 36 H 1.08999 * 109.51911 * 182.44012 * 8 7 6 37 37 H 1.09005 * 109.52327 * 62.25096 * 8 7 6 38 38 H 1.08998 * 109.50302 * 297.71172 * 9 8 7 39 39 H 1.09001 * 109.50422 * 177.59780 * 9 8 7 40 40 H 1.09001 * 109.46332 * 305.85346 * 10 5 4 41 41 H 1.09002 * 109.46120 * 65.82458 * 10 5 4 42 42 H 0.96993 * 120.00501 * 274.83073 * 11 2 1 43 43 H 1.09000 * 109.47205 * 65.57888 * 15 12 11 44 44 H 1.08996 * 109.46731 * 305.57643 * 15 12 11 45 45 H 0.96999 * 120.00060 * 185.00227 * 20 19 17 46 46 H 1.09007 * 117.49667 * 214.96625 * 25 16 15 47 47 H 1.08999 * 117.50597 * 359.97438 * 25 16 15 48 48 H 1.08997 * 117.49971 * 252.50801 * 26 25 16 49 49 H 1.08998 * 117.51999 * 107.47284 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5066 -0.7936 1.2083 6 6 4.0062 -1.8526 2.0946 7 6 5.5196 -1.9962 1.9175 8 6 6.1962 -0.6638 2.2515 9 6 5.6233 0.4313 1.3476 10 6 4.1071 0.5044 1.5411 11 7 2.0182 -0.6906 -1.1963 12 16 2.4080 0.1769 -2.5519 13 8 1.2686 0.9933 -2.7852 14 8 2.8091 -0.8077 -3.4947 15 6 3.8255 1.1908 -2.0485 16 6 4.1965 2.1478 -3.1832 17 6 4.4918 1.4986 -4.5106 18 1 3.7346 1.4746 -5.2804 19 6 5.7306 0.9402 -4.7446 20 7 6.6833 1.0533 -3.8451 21 14 6.0557 0.0231 -6.3392 22 1 5.8533 0.9415 -7.4885 23 1 7.4538 -0.4772 -6.3462 24 1 5.1185 -1.1234 -6.4506 25 6 3.5167 3.5183 -3.2027 26 6 4.9928 3.4021 -2.8174 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.7279 -0.1732 2.1381 31 1 1.6272 -1.7296 1.2805 32 1 3.7846 -1.5942 3.1301 33 1 3.5201 -2.7955 1.8437 34 1 5.7409 -2.2681 0.8855 35 1 5.8923 -2.7715 2.5868 36 1 7.2700 -0.7489 2.0850 37 1 6.0073 -0.4108 3.2948 38 1 5.8465 0.1975 0.3066 39 1 6.0703 1.3903 1.6096 40 1 3.6943 1.2736 0.8883 41 1 3.8850 0.7518 2.5792 42 1 2.1132 -1.6559 -1.1942 43 1 4.6743 0.5441 -1.8265 44 1 3.5640 1.7651 -1.1598 45 1 7.5750 0.7245 -4.0391 46 1 3.2831 3.9505 -4.1758 47 1 2.8046 3.7384 -2.4073 48 1 5.2521 3.5456 -1.7685 49 1 5.7306 3.7573 -3.5369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331551936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:26 Heat of formation + Delta-G solvation = -59.567501 kcal Electronic energy + Delta-G solvation = -29015.692916 eV Core-core repulsion = 25297.982055 eV Total energy + Delta-G solvation = -3717.710861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -39.21001 -36.66420 -36.48819 -35.87873 -34.88422 -32.85608 -31.97238 -30.84806 -29.74393 -28.06763 -26.36950 -25.37753 -23.31876 -22.90327 -21.14331 -20.88968 -19.72103 -19.62598 -18.52380 -16.92059 -16.38169 -16.21681 -15.78178 -14.97561 -14.88028 -14.60735 -14.44327 -14.38388 -14.17808 -13.69505 -13.50390 -13.44140 -13.09302 -12.89518 -12.71115 -12.33056 -11.95389 -11.89789 -11.78877 -11.73814 -11.18217 -11.15045 -11.08413 -10.97687 -10.94486 -10.82443 -10.79750 -10.60533 -10.46737 -10.38561 -10.35071 -10.22789 -10.02090 -9.59262 -9.09226 -8.90763 -8.46933 -8.29999 -8.00409 -6.06403 -4.18798 1.29434 3.38637 3.40867 3.52454 3.58856 3.84716 4.45658 4.63597 4.75910 4.80155 4.90150 4.94785 5.05419 5.17875 5.21074 5.22435 5.29831 5.35320 5.38417 5.38663 5.52378 5.55025 5.59065 5.60126 5.72758 5.76990 5.84512 5.93806 5.94872 5.99188 6.09534 6.20448 6.23843 6.32820 6.35656 6.39382 6.50220 6.51852 6.72004 6.77878 7.05577 7.07426 7.08480 7.29408 7.47834 7.54486 7.86639 8.26988 8.86302 9.54281 11.00242 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.005472 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.809580 B = 5115.552169 C = 6068.963396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.160 3.840 3 H 0.076 0.924 4 C 0.049 3.951 5 N -0.531 5.531 6 C 0.059 3.941 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.121 4.121 10 C 0.054 3.946 11 N -1.113 6.113 12 S 2.613 3.387 13 O -0.979 6.979 14 O -0.952 6.952 15 C -0.548 4.548 16 C 0.047 3.953 17 C -0.522 4.522 18 H 0.066 0.934 19 C 0.087 3.913 20 N -0.872 5.872 21 Si 0.887 3.113 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.265 1.265 25 C -0.208 4.208 26 C -0.139 4.139 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.029 0.971 42 H 0.411 0.589 43 H 0.134 0.866 44 H 0.091 0.909 45 H 0.262 0.738 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 -3.611 15.904 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.051 3.949 3 H 0.094 0.906 4 C -0.080 4.080 5 N -0.255 5.255 6 C -0.068 4.068 7 C -0.157 4.157 8 C -0.156 4.156 9 C -0.159 4.159 10 C -0.073 4.073 11 N -0.868 5.868 12 S 2.710 3.290 13 O -0.969 6.969 14 O -0.942 6.942 15 C -0.680 4.680 16 C 0.044 3.956 17 C -0.559 4.559 18 H 0.084 0.916 19 C -0.118 4.118 20 N -0.507 5.507 21 Si 0.713 3.287 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.190 1.190 25 C -0.245 4.245 26 C -0.179 4.179 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.244 0.756 43 H 0.152 0.848 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.342 -3.730 14.679 16.060 hybrid contribution 0.688 -0.435 0.682 1.062 sum -4.654 -4.165 15.361 16.582 Atomic orbital electron populations 1.22317 0.95171 1.02521 1.03047 1.20593 0.93640 0.95643 0.85044 0.90585 1.22450 0.87884 1.01239 0.96476 1.61793 1.05378 1.05370 1.52995 1.22071 0.96065 0.94885 0.93810 1.21598 0.94150 0.97194 1.02713 1.21551 0.99915 0.95288 0.98883 1.21616 0.93979 0.98505 1.01808 1.22172 0.95706 0.91010 0.98437 1.55798 1.82491 1.19135 1.29416 1.04869 0.76361 0.75042 0.72719 1.93477 1.48429 1.71090 1.83915 1.93542 1.84213 1.58173 1.58310 1.29931 1.18485 1.13186 1.06447 1.18241 1.00045 0.84587 0.92697 1.20483 0.99903 1.37811 0.97690 0.91624 1.24899 0.95903 0.94387 0.96626 1.69977 1.01896 1.44995 1.33785 0.86716 0.77379 0.81163 0.83418 1.20095 1.21170 1.18973 1.23115 0.95743 1.04345 1.01288 1.22502 0.92346 1.04135 0.98877 0.92283 0.92188 0.90434 0.93742 0.90270 0.95404 0.90923 0.90621 0.91965 0.91867 0.92845 0.89902 0.91609 0.90655 0.95272 0.75629 0.84832 0.89074 0.92798 0.89778 0.91162 0.91806 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.51 37.15 0.35 -1.61 16 2 C 0.16 2.00 2.70 -67.93 -0.18 1.82 16 3 H 0.08 0.98 5.87 -51.93 -0.30 0.67 16 4 C 0.05 0.50 4.61 -3.82 -0.02 0.48 16 5 N -0.53 -6.13 4.34 -234.67 -1.02 -7.15 16 6 C 0.06 0.60 5.43 -3.83 -0.02 0.58 16 7 C -0.12 -1.24 6.09 -26.65 -0.16 -1.41 16 8 C -0.12 -1.27 6.00 -26.61 -0.16 -1.43 16 9 C -0.12 -1.51 6.09 -26.65 -0.16 -1.68 16 10 C 0.05 0.64 5.29 -3.84 -0.02 0.62 16 11 N -1.11 -17.07 5.12 -4.89 -0.03 -17.10 16 12 S 2.61 54.56 4.95 -107.50 -0.53 54.03 16 13 O -0.98 -22.02 17.09 -57.54 -0.98 -23.01 16 14 O -0.95 -23.79 17.42 -57.54 -1.00 -24.79 16 15 C -0.55 -11.48 5.92 37.16 0.22 -11.26 16 16 C 0.05 1.13 1.46 -155.66 -0.23 0.91 16 17 C -0.52 -14.46 7.60 -34.44 -0.26 -14.72 16 18 H 0.07 1.87 7.82 -52.48 -0.41 1.46 16 19 C 0.09 2.42 5.44 -17.82 -0.10 2.32 16 20 N -0.87 -24.06 12.85 55.43 0.71 -23.35 16 21 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.21 -4.56 9.93 -26.73 -0.27 -4.83 16 26 C -0.14 -3.17 9.43 -26.73 -0.25 -3.42 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.08 7.41 -51.93 -0.38 0.69 16 30 H 0.04 0.40 8.00 -51.93 -0.42 -0.02 16 31 H 0.08 0.72 7.79 -51.93 -0.40 0.32 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.68 7.93 -51.93 -0.41 0.26 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.93 5.69 -51.93 -0.30 0.64 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.41 5.73 8.80 -34.46 -0.30 5.43 16 43 H 0.13 2.95 8.14 -51.92 -0.42 2.53 16 44 H 0.09 1.61 6.16 -51.93 -0.32 1.29 16 45 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 46 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 47 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -32.22 394.04 -11.92 -44.13 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -8.73 Total: 7.93 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: -1.26 Total: -33.63 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.33 Total: -47.59 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -1.99 Total: -47.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 54.56 SS G_CDS: -0.53 Total: 54.03 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.22 -11.92 -44.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331551936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.435 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds