Wall clock time and date at job start Tue Mar 31 2020 17:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47388 * 2 1 4 4 C 1.53001 * 109.47336 * 120.00176 * 2 1 3 5 5 N 1.46902 * 109.47002 * 176.55916 * 4 2 1 6 6 C 1.46854 * 110.99952 * 200.08220 * 5 4 2 7 7 C 1.53039 * 109.52350 * 174.16079 * 6 5 4 8 8 C 1.53120 * 109.27549 * 59.17904 * 7 6 5 9 9 C 1.53117 * 109.16158 * 302.34609 * 8 7 6 10 10 C 1.46843 * 110.99959 * 75.87317 * 5 4 2 11 11 N 1.46507 * 109.46839 * 240.00103 * 2 1 3 12 12 S 1.65598 * 119.99565 * 94.83105 * 11 2 1 13 13 O 1.42098 * 104.27841 * 308.92527 * 12 11 2 14 14 O 1.42099 * 104.27683 * 181.07085 * 12 11 2 15 15 C 1.81403 * 104.45256 * 65.00100 * 12 11 2 16 16 C 1.53004 * 109.46968 * 185.57742 * 15 12 11 17 17 C 1.50690 * 115.55222 * 304.02089 * 16 15 12 18 18 H 1.08005 * 120.00314 * 99.49949 * 17 16 15 19 19 C 1.37878 * 120.00128 * 279.22483 * 17 16 15 20 20 N 1.31516 * 119.99900 * 355.39619 * 19 17 16 21 21 Si 1.86800 * 120.00423 * 175.39627 * 19 17 16 22 22 H 1.48504 * 109.46803 * 59.99880 * 21 19 17 23 23 H 1.48499 * 109.47321 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46887 * 300.00070 * 21 19 17 25 25 C 1.52997 * 117.51430 * 89.72672 * 16 15 12 26 26 C 1.52998 * 60.00335 * 107.47654 * 25 16 15 27 27 H 1.08995 * 109.47388 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46908 * 299.99791 * 1 2 3 29 29 H 1.09002 * 109.47594 * 59.99411 * 1 2 3 30 30 H 1.08992 * 109.47239 * 296.55971 * 4 2 1 31 31 H 1.09003 * 109.46972 * 56.56101 * 4 2 1 32 32 H 1.09003 * 109.46001 * 294.17975 * 6 5 4 33 33 H 1.09002 * 109.45706 * 54.14491 * 6 5 4 34 34 H 1.08994 * 109.50008 * 299.24004 * 7 6 5 35 35 H 1.08999 * 109.50167 * 179.11748 * 7 6 5 36 36 H 1.08999 * 109.51911 * 182.44012 * 8 7 6 37 37 H 1.09005 * 109.52327 * 62.25096 * 8 7 6 38 38 H 1.08998 * 109.50302 * 297.71172 * 9 8 7 39 39 H 1.09001 * 109.50422 * 177.59780 * 9 8 7 40 40 H 1.09001 * 109.46332 * 305.85346 * 10 5 4 41 41 H 1.09002 * 109.46120 * 65.82458 * 10 5 4 42 42 H 0.96993 * 120.00501 * 274.83073 * 11 2 1 43 43 H 1.09000 * 109.47205 * 65.57888 * 15 12 11 44 44 H 1.08996 * 109.46731 * 305.57643 * 15 12 11 45 45 H 0.96999 * 120.00060 * 185.00227 * 20 19 17 46 46 H 1.09007 * 117.49667 * 214.96625 * 25 16 15 47 47 H 1.08999 * 117.50597 * 359.97438 * 25 16 15 48 48 H 1.08997 * 117.49971 * 252.50801 * 26 25 16 49 49 H 1.08998 * 117.51999 * 107.47284 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5066 -0.7936 1.2083 6 6 4.0062 -1.8526 2.0946 7 6 5.5196 -1.9962 1.9175 8 6 6.1962 -0.6638 2.2515 9 6 5.6233 0.4313 1.3476 10 6 4.1071 0.5044 1.5411 11 7 2.0182 -0.6906 -1.1963 12 16 2.4080 0.1769 -2.5519 13 8 1.2686 0.9933 -2.7852 14 8 2.8091 -0.8077 -3.4947 15 6 3.8255 1.1908 -2.0485 16 6 4.1965 2.1478 -3.1832 17 6 4.4918 1.4986 -4.5106 18 1 3.7346 1.4746 -5.2804 19 6 5.7306 0.9402 -4.7446 20 7 6.6833 1.0533 -3.8451 21 14 6.0557 0.0231 -6.3392 22 1 5.8533 0.9415 -7.4885 23 1 7.4538 -0.4772 -6.3462 24 1 5.1185 -1.1234 -6.4506 25 6 3.5167 3.5183 -3.2027 26 6 4.9928 3.4021 -2.8174 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.7279 -0.1732 2.1381 31 1 1.6272 -1.7296 1.2805 32 1 3.7846 -1.5942 3.1301 33 1 3.5201 -2.7955 1.8437 34 1 5.7409 -2.2681 0.8855 35 1 5.8923 -2.7715 2.5868 36 1 7.2700 -0.7489 2.0850 37 1 6.0073 -0.4108 3.2948 38 1 5.8465 0.1975 0.3066 39 1 6.0703 1.3903 1.6096 40 1 3.6943 1.2736 0.8883 41 1 3.8850 0.7518 2.5792 42 1 2.1132 -1.6559 -1.1942 43 1 4.6743 0.5441 -1.8265 44 1 3.5640 1.7651 -1.1598 45 1 7.5750 0.7245 -4.0391 46 1 3.2831 3.9505 -4.1758 47 1 2.8046 3.7384 -2.4073 48 1 5.2521 3.5456 -1.7685 49 1 5.7306 3.7573 -3.5369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331551936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:24 Heat of formation + Delta-G solvation = -81.981790 kcal Electronic energy + Delta-G solvation = -29016.664872 eV Core-core repulsion = 25297.982055 eV Total energy + Delta-G solvation = -3718.682817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -40.07563 -38.51223 -37.92087 -37.25763 -36.65597 -34.06615 -33.80042 -31.70931 -30.84193 -29.79418 -27.46113 -27.19366 -24.20603 -23.76060 -22.93612 -21.88589 -21.49449 -20.55992 -20.13897 -18.47133 -18.26603 -17.33160 -16.85041 -16.80495 -16.52741 -15.99215 -15.62023 -15.57672 -15.32970 -15.18699 -14.83564 -14.49106 -14.33165 -13.87104 -13.77605 -13.73450 -13.65101 -13.14867 -13.04954 -12.97840 -12.87072 -12.80463 -12.76050 -12.61950 -12.42293 -12.28782 -12.13931 -12.05207 -11.90067 -11.78033 -11.55780 -11.46140 -11.21118 -11.09870 -10.93753 -10.50525 -10.31656 -9.81172 -9.10014 -8.17260 -6.32914 -0.35385 1.35607 1.40644 1.49174 2.17220 2.40674 2.98390 3.09278 3.10840 3.39016 3.58371 3.80726 3.94685 3.99547 4.09257 4.10808 4.24246 4.26136 4.36170 4.45826 4.50185 4.55326 4.58833 4.63409 4.69218 4.72221 4.77317 4.80660 4.89346 4.91853 4.99897 5.00416 5.02269 5.11308 5.12154 5.24545 5.32570 5.37072 5.37962 5.45695 5.47030 5.56848 5.64359 5.73912 6.22542 6.24906 6.28888 6.38096 6.72804 7.40637 8.88468 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.005472 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.809580 B = 5115.552169 C = 6068.963396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.149 3.851 3 H 0.074 0.926 4 C 0.055 3.945 5 N -0.552 5.552 6 C 0.061 3.939 7 C -0.119 4.119 8 C -0.115 4.115 9 C -0.123 4.123 10 C 0.056 3.944 11 N -1.097 6.097 12 S 2.625 3.375 13 O -0.998 6.998 14 O -1.002 7.002 15 C -0.536 4.536 16 C 0.013 3.987 17 C -0.539 4.539 18 H 0.045 0.955 19 C 0.050 3.950 20 N -0.885 5.885 21 Si 0.924 3.076 22 H -0.266 1.266 23 H -0.271 1.271 24 H -0.280 1.280 25 C -0.194 4.194 26 C -0.134 4.134 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.419 0.581 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.264 0.736 46 H 0.078 0.922 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 -3.768 18.695 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.041 3.959 3 H 0.092 0.908 4 C -0.074 4.074 5 N -0.277 5.277 6 C -0.066 4.066 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.161 4.161 10 C -0.072 4.072 11 N -0.857 5.857 12 S 2.722 3.278 13 O -0.988 6.988 14 O -0.992 6.992 15 C -0.669 4.669 16 C 0.011 3.989 17 C -0.577 4.577 18 H 0.063 0.937 19 C -0.154 4.154 20 N -0.521 5.521 21 Si 0.749 3.251 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.206 1.206 25 C -0.231 4.231 26 C -0.173 4.173 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.254 0.746 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.117 0.883 48 H 0.104 0.896 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.237 -3.880 17.462 18.944 hybrid contribution 0.932 -0.373 -0.137 1.013 sum -5.305 -4.253 17.325 18.611 Atomic orbital electron populations 1.22291 0.94063 1.03422 1.03086 1.20959 0.94566 0.95674 0.84662 0.90806 1.22421 0.87061 1.02195 0.95709 1.61736 1.06266 1.05567 1.54132 1.22088 0.95361 0.94793 0.94367 1.21599 0.95023 0.97517 1.01545 1.21529 0.99554 0.94859 0.99360 1.21590 0.95274 0.99280 0.99929 1.22125 0.94724 0.91078 0.99277 1.55315 1.82019 1.19225 1.29150 1.04207 0.75888 0.74545 0.73198 1.93447 1.48868 1.71707 1.84785 1.93470 1.84849 1.59607 1.61299 1.29734 1.17895 1.12745 1.06523 1.18369 1.02248 0.85843 0.92488 1.20665 0.99553 1.38406 0.99035 0.93707 1.25416 0.96035 0.95072 0.98865 1.70016 1.01983 1.45551 1.34530 0.86137 0.77553 0.79909 0.81507 1.19110 1.19582 1.20585 1.23177 0.95791 1.02162 1.02009 1.22427 0.92375 1.02979 0.99529 0.91026 0.89243 0.93266 0.91282 0.88687 0.93767 0.90052 0.93255 0.90120 0.92376 0.91046 0.93641 0.91379 0.91573 0.93361 0.74609 0.86349 0.85780 0.92654 0.90292 0.88326 0.89609 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 9.51 71.98 0.68 -2.73 16 2 C 0.15 3.37 2.70 44.99 0.12 3.49 16 3 H 0.07 1.71 5.87 -2.39 -0.01 1.70 16 4 C 0.06 0.93 4.61 86.30 0.40 1.33 16 5 N -0.55 -11.35 4.34 -896.34 -3.89 -15.24 16 6 C 0.06 1.05 5.43 86.32 0.47 1.52 16 7 C -0.12 -2.30 6.09 30.65 0.19 -2.11 16 8 C -0.12 -2.30 6.00 30.67 0.18 -2.12 16 9 C -0.12 -2.97 6.09 30.64 0.19 -2.78 16 10 C 0.06 1.18 5.29 86.33 0.46 1.64 16 11 N -1.10 -32.55 5.12 -169.39 -0.87 -33.42 16 12 S 2.62 110.31 4.95 -56.49 -0.28 110.03 16 13 O -1.00 -44.89 17.09 -127.65 -2.18 -47.07 16 14 O -1.00 -51.60 17.42 -127.65 -2.22 -53.82 16 15 C -0.54 -22.45 5.92 71.98 0.43 -22.02 16 16 C 0.01 0.62 1.46 -52.93 -0.08 0.54 16 17 C -0.54 -30.64 7.60 25.60 0.19 -30.45 16 18 H 0.04 2.65 7.82 -2.91 -0.02 2.63 16 19 C 0.05 2.81 5.44 84.65 0.46 3.27 16 20 N -0.89 -49.68 12.85 21.45 0.28 -49.40 16 21 Si 0.92 45.76 29.54 68.60 2.03 47.79 16 22 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 25 C -0.19 -8.37 9.93 30.59 0.30 -8.07 16 26 C -0.13 -6.04 9.43 30.60 0.29 -5.75 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.05 1.29 7.41 -2.39 -0.02 1.27 16 30 H 0.07 0.89 8.00 -2.39 -0.02 0.87 16 31 H 0.09 1.33 7.79 -2.39 -0.02 1.31 16 32 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 1.26 7.93 -2.39 -0.02 1.24 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.49 5.69 -2.39 -0.01 1.48 16 41 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.42 11.29 8.80 -96.76 -0.85 10.43 16 43 H 0.12 5.35 8.14 -2.39 -0.02 5.33 16 44 H 0.12 4.22 6.16 -2.39 -0.01 4.20 16 45 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 46 H 0.08 3.44 8.14 -2.38 -0.02 3.42 16 47 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 48 H 0.09 3.43 8.14 -2.39 -0.02 3.42 16 49 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -71.16 394.04 -2.79 -73.95 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.07 Total: 31.44 kcal Atomic # 6 Polarization: -68.53 SS G_CDS: 4.28 Total: -64.25 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -4.48 Total: -98.06 kcal Atomic # 8 Polarization: -96.49 SS G_CDS: -4.40 Total: -100.90 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 110.31 SS G_CDS: -0.28 Total: 110.03 kcal Total: -71.16 -2.79 -73.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331551936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.033 kcal (2) G-P(sol) polarization free energy of solvation -71.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds