Wall clock time and date at job start Tue Mar 31 2020 18:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 110.99731 * 2 1 4 4 C 1.46898 * 111.00339 * 123.95362 * 2 1 3 5 5 C 1.53001 * 110.01706 * 59.48628 * 4 2 1 6 6 N 1.46506 * 109.46664 * 52.86386 * 5 4 2 7 7 S 1.65600 * 120.00213 * 151.51685 * 6 5 4 8 8 O 1.42104 * 104.27345 * 308.92795 * 7 6 5 9 9 O 1.42095 * 104.27888 * 181.07064 * 7 6 5 10 10 C 1.81397 * 104.44961 * 64.99565 * 7 6 5 11 11 C 1.53000 * 109.47284 * 186.43753 * 10 7 6 12 12 C 1.50705 * 115.54665 * 306.17129 * 11 10 7 13 13 H 1.07998 * 119.99540 * 95.46933 * 12 11 10 14 14 C 1.37878 * 120.00328 * 275.19535 * 12 11 10 15 15 N 1.31514 * 119.99659 * 355.71912 * 14 12 11 16 16 Si 1.86798 * 120.00149 * 175.71957 * 14 12 11 17 17 H 1.48498 * 109.46873 * 59.99804 * 16 14 12 18 18 H 1.48501 * 109.46981 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46899 * 299.99980 * 16 14 12 20 20 C 1.52995 * 117.50032 * 91.84341 * 11 10 7 21 21 C 1.53000 * 117.50071 * 160.50795 * 11 10 7 22 22 C 1.54265 * 110.03337 * 180.88223 * 4 2 1 23 23 C 1.54968 * 104.15884 * 95.75757 * 22 4 2 24 24 C 1.54889 * 102.77891 * 37.88643 * 23 22 4 25 25 C 1.53877 * 110.03127 * 298.10336 * 4 2 1 26 26 H 1.08998 * 109.47064 * 300.62282 * 1 2 3 27 27 H 1.08998 * 109.47579 * 60.62229 * 1 2 3 28 28 H 1.08999 * 109.47057 * 180.62505 * 1 2 3 29 29 H 1.09002 * 109.47390 * 183.95500 * 3 2 1 30 30 H 1.09005 * 109.47656 * 303.95454 * 3 2 1 31 31 H 1.08998 * 109.47543 * 63.95438 * 3 2 1 32 32 H 1.09001 * 109.47602 * 292.86882 * 5 4 2 33 33 H 1.08992 * 109.47221 * 172.85687 * 5 4 2 34 34 H 0.96998 * 120.00266 * 331.51409 * 6 5 4 35 35 H 1.09000 * 109.46841 * 66.43563 * 10 7 6 36 36 H 1.09003 * 109.47529 * 306.43918 * 10 7 6 37 37 H 0.97000 * 119.99942 * 185.00482 * 15 14 12 38 38 H 1.09004 * 117.49919 * 215.00285 * 20 11 10 39 39 H 1.08994 * 117.50099 * 0.02594 * 20 11 10 40 40 H 1.08995 * 117.49719 * 359.97182 * 21 11 10 41 41 H 1.09002 * 117.50036 * 144.97264 * 21 11 10 42 42 H 1.09002 * 110.48631 * 214.39727 * 22 4 2 43 43 H 1.08996 * 110.48440 * 337.04836 * 22 4 2 44 44 H 1.09005 * 110.71333 * 279.57162 * 23 22 4 45 45 H 1.08993 * 110.92183 * 156.29751 * 23 22 4 46 46 H 1.08998 * 110.48651 * 203.40946 * 24 23 22 47 47 H 1.08994 * 110.48578 * 80.76106 * 24 23 22 48 48 H 1.09004 * 110.03233 * 359.94331 * 25 4 2 49 49 H 1.08995 * 110.03588 * 121.37871 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.5018 -2.2125 1.0684 6 7 1.8138 -2.7724 -0.2490 7 16 2.0679 -4.4000 -0.4179 8 8 3.0308 -4.7097 0.5803 9 8 2.3633 -4.5673 -1.7977 10 6 0.4676 -5.1524 -0.0137 11 6 0.6144 -6.6749 0.0221 12 6 1.2080 -7.2999 -1.2141 13 1 2.2658 -7.5138 -1.2562 14 6 0.3998 -7.6039 -2.2890 15 7 -0.9006 -7.4268 -2.2047 16 14 1.1520 -8.2671 -3.8650 17 1 1.8607 -9.5400 -3.5777 18 1 0.0782 -8.5116 -4.8613 19 1 2.1150 -7.2762 -4.4091 20 6 0.9448 -7.3213 1.3689 21 6 -0.4566 -7.4705 0.7712 22 6 3.5378 -0.7329 1.1284 23 6 3.8978 0.4258 2.0925 24 6 2.8351 0.2841 3.2103 25 6 1.5487 -0.1193 2.4604 26 1 -0.3633 0.5235 0.8843 27 1 -0.3634 0.5041 -0.8955 28 1 -0.3633 -1.0276 0.0112 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8724 0.9233 32 1 0.4237 -2.2365 1.2273 33 1 1.9961 -2.8024 1.8401 34 1 1.8714 -2.1898 -1.0224 35 1 -0.2656 -4.8757 -0.7713 36 1 0.1346 -4.7964 0.9613 37 1 -1.4766 -7.7080 -2.9328 38 1 1.5916 -8.1987 1.3608 39 1 1.0573 -6.6620 2.2295 40 1 -1.2654 -6.9091 1.2389 41 1 -0.7320 -8.4457 0.3698 42 1 3.9418 -1.6755 1.4976 43 1 3.9089 -0.5246 0.1250 44 1 3.8041 1.3886 1.5901 45 1 4.9023 0.2984 2.4960 46 1 2.6943 1.2343 3.7254 47 1 3.1252 -0.4942 3.9160 48 1 0.9420 0.7634 2.2583 49 1 0.9802 -0.8360 3.0531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331705430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:16 Heat of formation + Delta-G solvation = -43.547509 kcal Electronic energy + Delta-G solvation = -28485.979412 eV Core-core repulsion = 24768.963231 eV Total energy + Delta-G solvation = -3717.016182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 4.17 seconds Orbital eigenvalues (eV) -40.30057 -36.69127 -36.10580 -34.97620 -34.89137 -34.35811 -31.99135 -29.53005 -28.88124 -28.13571 -27.24751 -25.41084 -24.32692 -23.45868 -21.14199 -20.93121 -19.67560 -18.89802 -18.44434 -16.89052 -16.83419 -16.34550 -15.86164 -15.12052 -15.03861 -14.88583 -14.63861 -14.47446 -14.40013 -13.99874 -13.69668 -13.19073 -13.02842 -12.80845 -12.38621 -12.07381 -12.04831 -11.98010 -11.76370 -11.70287 -11.35896 -11.22660 -11.16523 -11.13246 -11.04707 -10.98739 -10.90826 -10.82549 -10.63500 -10.59885 -10.49368 -10.38286 -10.04647 -9.62037 -9.10539 -8.94457 -8.47839 -8.41245 -8.04372 -6.09250 -4.23097 1.21356 3.37449 3.39877 3.51104 3.54374 3.85687 4.33464 4.40546 4.43545 4.63627 4.72136 4.98622 5.02068 5.05525 5.12045 5.19293 5.20970 5.24736 5.29012 5.32638 5.40768 5.47922 5.49884 5.55822 5.62864 5.66209 5.75055 5.76028 5.80109 5.87172 5.89959 5.95694 5.97285 6.12706 6.21751 6.27806 6.32972 6.42687 6.66534 6.75208 6.91741 6.98379 7.02863 7.25059 7.48599 7.56470 7.83325 8.23225 8.83208 9.50882 10.97247 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.003716 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.709717 B = 7532.928932 C = 7841.636976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.529 5.529 3 C 0.019 3.981 4 C 0.103 3.897 5 C 0.133 3.867 6 N -1.123 6.123 7 S 2.615 3.385 8 O -0.976 6.976 9 O -0.949 6.949 10 C -0.559 4.559 11 C 0.042 3.958 12 C -0.524 4.524 13 H 0.067 0.933 14 C 0.086 3.914 15 N -0.874 5.874 16 Si 0.889 3.111 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.264 1.264 20 C -0.206 4.206 21 C -0.136 4.136 22 C -0.114 4.114 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.152 4.152 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.419 0.581 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.263 0.737 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 18.035 8.984 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.252 5.252 3 C -0.129 4.129 4 C 0.011 3.989 5 C 0.005 3.995 6 N -0.882 5.882 7 S 2.711 3.289 8 O -0.966 6.966 9 O -0.939 6.939 10 C -0.691 4.691 11 C 0.040 3.960 12 C -0.561 4.561 13 H 0.085 0.915 14 C -0.119 4.119 15 N -0.509 5.509 16 Si 0.715 3.285 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.243 4.243 21 C -0.175 4.175 22 C -0.152 4.152 23 C -0.170 4.170 24 C -0.159 4.159 25 C -0.192 4.192 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.254 0.746 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.875 17.357 8.297 19.452 hybrid contribution -0.953 0.416 -0.207 1.060 sum 1.922 17.773 8.090 19.622 Atomic orbital electron populations 1.22512 0.87438 1.02899 1.00545 1.62116 1.07856 1.13580 1.41694 1.22553 1.01296 0.88871 1.00187 1.21948 0.95710 0.92899 0.88307 1.21331 0.99329 0.93188 0.85626 1.55833 1.89601 1.27602 1.15117 1.04855 0.77665 0.71969 0.74413 1.93478 1.57627 1.83236 1.62234 1.93550 1.83705 1.83786 1.32840 1.30008 1.21267 1.09216 1.08618 1.18241 1.01142 0.85463 0.91144 1.20502 0.94986 1.43555 0.97044 0.91493 1.24928 0.94696 0.93951 0.98334 1.69988 1.02988 1.44997 1.32889 0.86679 0.79373 0.79650 0.82787 1.20001 1.21129 1.18884 1.23141 1.00531 1.03571 0.97082 1.22497 0.89927 1.02275 1.02836 1.22499 0.93044 0.99301 1.00378 1.22733 0.98787 0.98896 0.96633 1.22310 0.94808 1.01092 0.97699 1.22825 0.98465 1.00987 0.96944 0.95455 0.91344 0.90522 0.90731 0.91752 0.95343 0.92440 0.89730 0.74563 0.85360 0.88694 0.92710 0.89680 0.91182 0.91817 0.89336 0.90028 0.90370 0.91291 0.91475 0.92002 0.91264 0.91250 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.95 60.06 0.54 0.67 16 2 N -0.53 -5.44 3.95 -234.10 -0.92 -6.36 16 3 C 0.02 0.16 7.86 60.06 0.47 0.63 16 4 C 0.10 1.09 0.46 -130.48 -0.06 1.03 16 5 C 0.13 1.69 4.20 -4.04 -0.02 1.67 16 6 N -1.12 -17.31 5.61 -10.61 -0.06 -17.37 16 7 S 2.61 54.03 4.96 -107.50 -0.53 53.50 16 8 O -0.98 -21.79 17.39 -57.54 -1.00 -22.79 16 9 O -0.95 -23.46 17.42 -57.54 -1.00 -24.46 16 10 C -0.56 -11.73 6.02 37.16 0.22 -11.50 16 11 C 0.04 1.04 1.55 -155.66 -0.24 0.80 16 12 C -0.52 -14.57 7.54 -34.44 -0.26 -14.83 16 13 H 0.07 1.90 7.82 -52.49 -0.41 1.49 16 14 C 0.09 2.41 5.43 -17.82 -0.10 2.31 16 15 N -0.87 -24.40 12.67 55.43 0.70 -23.70 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.26 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.21 -4.54 9.92 -26.69 -0.26 -4.81 16 21 C -0.14 -3.14 9.20 -26.69 -0.25 -3.39 16 22 C -0.11 -1.25 5.21 -25.03 -0.13 -1.38 16 23 C -0.13 -1.14 6.34 -24.70 -0.16 -1.29 16 24 C -0.12 -0.99 6.83 -25.07 -0.17 -1.16 16 25 C -0.15 -1.35 5.06 -25.61 -0.13 -1.48 16 26 H 0.03 0.23 6.58 -51.93 -0.34 -0.11 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.78 6.26 -51.93 -0.33 0.46 16 29 H 0.07 0.63 5.30 -51.93 -0.28 0.35 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.22 6.36 -51.93 -0.33 -0.11 16 32 H 0.06 0.64 6.75 -51.93 -0.35 0.29 16 33 H 0.08 1.10 7.36 -51.93 -0.38 0.72 16 34 H 0.42 6.19 7.99 -34.46 -0.28 5.92 16 35 H 0.13 2.78 8.14 -51.92 -0.42 2.35 16 36 H 0.09 1.64 8.09 -51.92 -0.42 1.22 16 37 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 38 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 42 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 43 H 0.08 0.89 7.33 -51.93 -0.38 0.51 16 44 H 0.07 0.53 5.86 -51.93 -0.30 0.23 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.59 5.13 -51.93 -0.27 0.32 16 49 H 0.07 0.61 7.67 -51.93 -0.40 0.22 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -32.53 383.39 -10.83 -43.35 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.22 Total: 7.83 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: -0.54 Total: -32.74 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.28 Total: -47.43 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -2.00 Total: -47.26 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 54.03 SS G_CDS: -0.53 Total: 53.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.53 -10.83 -43.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331705430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.195 kcal (2) G-P(sol) polarization free energy of solvation -32.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.18 seconds