Wall clock time and date at job start Tue Mar 31 2020 18:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 110.99731 * 2 1 4 4 C 1.46898 * 111.00339 * 123.95362 * 2 1 3 5 5 C 1.53001 * 110.01706 * 59.48628 * 4 2 1 6 6 N 1.46506 * 109.46664 * 52.86386 * 5 4 2 7 7 S 1.65600 * 120.00213 * 151.51685 * 6 5 4 8 8 O 1.42104 * 104.27345 * 308.92795 * 7 6 5 9 9 O 1.42095 * 104.27888 * 181.07064 * 7 6 5 10 10 C 1.81397 * 104.44961 * 64.99565 * 7 6 5 11 11 C 1.53000 * 109.47284 * 186.43753 * 10 7 6 12 12 C 1.50705 * 115.54665 * 306.17129 * 11 10 7 13 13 H 1.07998 * 119.99540 * 95.46933 * 12 11 10 14 14 C 1.37878 * 120.00328 * 275.19535 * 12 11 10 15 15 N 1.31514 * 119.99659 * 355.71912 * 14 12 11 16 16 Si 1.86798 * 120.00149 * 175.71957 * 14 12 11 17 17 H 1.48498 * 109.46873 * 59.99804 * 16 14 12 18 18 H 1.48501 * 109.46981 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46899 * 299.99980 * 16 14 12 20 20 C 1.52995 * 117.50032 * 91.84341 * 11 10 7 21 21 C 1.53000 * 117.50071 * 160.50795 * 11 10 7 22 22 C 1.54265 * 110.03337 * 180.88223 * 4 2 1 23 23 C 1.54968 * 104.15884 * 95.75757 * 22 4 2 24 24 C 1.54889 * 102.77891 * 37.88643 * 23 22 4 25 25 C 1.53877 * 110.03127 * 298.10336 * 4 2 1 26 26 H 1.08998 * 109.47064 * 300.62282 * 1 2 3 27 27 H 1.08998 * 109.47579 * 60.62229 * 1 2 3 28 28 H 1.08999 * 109.47057 * 180.62505 * 1 2 3 29 29 H 1.09002 * 109.47390 * 183.95500 * 3 2 1 30 30 H 1.09005 * 109.47656 * 303.95454 * 3 2 1 31 31 H 1.08998 * 109.47543 * 63.95438 * 3 2 1 32 32 H 1.09001 * 109.47602 * 292.86882 * 5 4 2 33 33 H 1.08992 * 109.47221 * 172.85687 * 5 4 2 34 34 H 0.96998 * 120.00266 * 331.51409 * 6 5 4 35 35 H 1.09000 * 109.46841 * 66.43563 * 10 7 6 36 36 H 1.09003 * 109.47529 * 306.43918 * 10 7 6 37 37 H 0.97000 * 119.99942 * 185.00482 * 15 14 12 38 38 H 1.09004 * 117.49919 * 215.00285 * 20 11 10 39 39 H 1.08994 * 117.50099 * 0.02594 * 20 11 10 40 40 H 1.08995 * 117.49719 * 359.97182 * 21 11 10 41 41 H 1.09002 * 117.50036 * 144.97264 * 21 11 10 42 42 H 1.09002 * 110.48631 * 214.39727 * 22 4 2 43 43 H 1.08996 * 110.48440 * 337.04836 * 22 4 2 44 44 H 1.09005 * 110.71333 * 279.57162 * 23 22 4 45 45 H 1.08993 * 110.92183 * 156.29751 * 23 22 4 46 46 H 1.08998 * 110.48651 * 203.40946 * 24 23 22 47 47 H 1.08994 * 110.48578 * 80.76106 * 24 23 22 48 48 H 1.09004 * 110.03233 * 359.94331 * 25 4 2 49 49 H 1.08995 * 110.03588 * 121.37871 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 1.5018 -2.2125 1.0684 6 7 1.8138 -2.7724 -0.2490 7 16 2.0679 -4.4000 -0.4179 8 8 3.0308 -4.7097 0.5803 9 8 2.3633 -4.5673 -1.7977 10 6 0.4676 -5.1524 -0.0137 11 6 0.6144 -6.6749 0.0221 12 6 1.2080 -7.2999 -1.2141 13 1 2.2658 -7.5138 -1.2562 14 6 0.3998 -7.6039 -2.2890 15 7 -0.9006 -7.4268 -2.2047 16 14 1.1520 -8.2671 -3.8650 17 1 1.8607 -9.5400 -3.5777 18 1 0.0782 -8.5116 -4.8613 19 1 2.1150 -7.2762 -4.4091 20 6 0.9448 -7.3213 1.3689 21 6 -0.4566 -7.4705 0.7712 22 6 3.5378 -0.7329 1.1284 23 6 3.8978 0.4258 2.0925 24 6 2.8351 0.2841 3.2103 25 6 1.5487 -0.1193 2.4604 26 1 -0.3633 0.5235 0.8843 27 1 -0.3634 0.5041 -0.8955 28 1 -0.3633 -1.0276 0.0112 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8724 0.9233 32 1 0.4237 -2.2365 1.2273 33 1 1.9961 -2.8024 1.8401 34 1 1.8714 -2.1898 -1.0224 35 1 -0.2656 -4.8757 -0.7713 36 1 0.1346 -4.7964 0.9613 37 1 -1.4766 -7.7080 -2.9328 38 1 1.5916 -8.1987 1.3608 39 1 1.0573 -6.6620 2.2295 40 1 -1.2654 -6.9091 1.2389 41 1 -0.7320 -8.4457 0.3698 42 1 3.9418 -1.6755 1.4976 43 1 3.9089 -0.5246 0.1250 44 1 3.8041 1.3886 1.5901 45 1 4.9023 0.2984 2.4960 46 1 2.6943 1.2343 3.7254 47 1 3.1252 -0.4942 3.9160 48 1 0.9420 0.7634 2.2583 49 1 0.9802 -0.8360 3.0531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331705430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:14 Heat of formation + Delta-G solvation = -66.280987 kcal Electronic energy + Delta-G solvation = -28486.965210 eV Core-core repulsion = 24768.963231 eV Total energy + Delta-G solvation = -3718.001979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.08696 -38.53026 -37.86177 -36.71460 -35.75572 -35.39524 -34.07525 -30.32606 -29.89671 -29.68157 -27.94115 -27.48010 -25.27446 -24.19466 -22.93363 -21.65574 -21.46314 -20.19131 -19.65021 -18.45129 -18.17984 -17.76392 -16.99520 -16.82817 -16.51396 -16.15734 -15.78316 -15.58569 -15.38837 -15.20929 -15.12162 -14.86528 -13.90023 -13.79042 -13.73410 -13.64909 -13.24671 -13.06527 -13.03570 -12.89348 -12.86389 -12.82113 -12.76366 -12.48329 -12.42042 -12.23954 -12.13061 -11.99834 -11.89029 -11.86642 -11.74891 -11.60857 -11.46741 -11.27643 -10.97003 -10.50690 -10.29805 -9.83934 -9.13806 -8.19549 -6.36568 -0.42293 1.36195 1.41398 1.49793 2.14246 2.39955 3.03549 3.06975 3.08413 3.36468 3.50042 3.60473 3.65927 3.89285 4.03396 4.24659 4.28483 4.31537 4.35807 4.51855 4.53860 4.54516 4.57306 4.57812 4.63032 4.71313 4.74273 4.84285 4.87029 4.89146 4.95418 5.00407 5.01550 5.08554 5.13395 5.17492 5.21074 5.23648 5.26532 5.42119 5.44404 5.50167 5.65413 5.70740 6.18694 6.21258 6.21988 6.33986 6.70686 7.38069 8.86261 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.003716 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.709717 B = 7532.928932 C = 7841.636976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.545 5.545 3 C 0.020 3.980 4 C 0.106 3.894 5 C 0.120 3.880 6 N -1.107 6.107 7 S 2.628 3.372 8 O -0.996 6.996 9 O -0.998 6.998 10 C -0.553 4.553 11 C 0.006 3.994 12 C -0.541 4.541 13 H 0.046 0.954 14 C 0.048 3.952 15 N -0.889 5.889 16 Si 0.927 3.073 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.279 1.279 20 C -0.192 4.192 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.148 4.148 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.424 0.576 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.266 0.734 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 19.910 10.481 22.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.268 5.268 3 C -0.128 4.128 4 C 0.014 3.986 5 C -0.006 4.006 6 N -0.868 5.868 7 S 2.725 3.275 8 O -0.986 6.986 9 O -0.988 6.988 10 C -0.686 4.686 11 C 0.004 3.996 12 C -0.578 4.578 13 H 0.064 0.936 14 C -0.155 4.155 15 N -0.525 5.525 16 Si 0.752 3.248 17 H -0.191 1.191 18 H -0.195 1.195 19 H -0.204 1.204 20 C -0.229 4.229 21 C -0.171 4.171 22 C -0.158 4.158 23 C -0.165 4.165 24 C -0.157 4.157 25 C -0.188 4.188 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.260 0.740 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.129 19.222 9.796 21.678 hybrid contribution -0.693 -0.123 -0.632 0.946 sum 1.436 19.099 9.164 21.232 Atomic orbital electron populations 1.22524 0.86955 1.02566 1.01423 1.62081 1.08426 1.14630 1.41711 1.22571 1.01208 0.88005 1.00989 1.21884 0.95285 0.91759 0.89667 1.21697 1.00808 0.94468 0.83668 1.55327 1.89403 1.25389 1.16699 1.04145 0.77455 0.72979 0.72927 1.93444 1.58566 1.84247 1.62374 1.93478 1.84608 1.85196 1.35525 1.29868 1.21057 1.06965 1.10674 1.18395 1.02709 0.87393 0.91096 1.20694 0.94218 1.43972 0.98952 0.93564 1.25459 0.95217 0.94546 1.00326 1.70022 1.03349 1.45656 1.33498 0.86082 0.78950 0.79117 0.80651 1.19078 1.19519 1.20424 1.23208 0.99503 1.03415 0.96776 1.22428 0.90893 1.01178 1.02639 1.22496 0.93529 0.99368 1.00391 1.22708 0.99205 0.98296 0.96256 1.22316 0.94121 1.01847 0.97421 1.22792 0.98921 1.01257 0.95801 0.94140 0.90930 0.91438 0.90871 0.91196 0.94263 0.90283 0.90022 0.73964 0.86208 0.84689 0.92524 0.90295 0.88089 0.89497 0.91655 0.92086 0.91401 0.90177 0.91168 0.90429 0.91484 0.90336 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 8.95 127.69 1.14 1.36 16 2 N -0.54 -10.13 3.95 -894.57 -3.53 -13.66 16 3 C 0.02 0.29 7.86 127.69 1.00 1.30 16 4 C 0.11 2.04 0.46 4.25 0.00 2.05 16 5 C 0.12 2.83 4.20 86.38 0.36 3.19 16 6 N -1.11 -33.32 5.61 -187.48 -1.05 -34.37 16 7 S 2.63 108.65 4.96 -56.49 -0.28 108.37 16 8 O -1.00 -44.45 17.39 -127.65 -2.22 -46.67 16 9 O -1.00 -50.66 17.42 -127.65 -2.22 -52.88 16 10 C -0.55 -22.59 6.02 71.98 0.43 -22.16 16 11 C 0.01 0.30 1.55 -52.93 -0.08 0.21 16 12 C -0.54 -30.58 7.54 25.60 0.19 -30.38 16 13 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 14 C 0.05 2.70 5.43 84.65 0.46 3.16 16 15 N -0.89 -49.85 12.67 21.45 0.27 -49.58 16 16 Si 0.93 45.44 29.54 68.60 2.03 47.47 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -14.22 7.11 99.48 0.71 -13.52 16 20 C -0.19 -8.18 9.92 30.62 0.30 -7.88 16 21 C -0.13 -5.95 9.20 30.62 0.28 -5.67 16 22 C -0.12 -2.50 5.21 31.70 0.17 -2.34 16 23 C -0.13 -1.92 6.34 31.91 0.20 -1.72 16 24 C -0.12 -1.63 6.83 31.67 0.22 -1.41 16 25 C -0.15 -2.20 5.06 31.32 0.16 -2.04 16 26 H 0.04 0.56 6.58 -2.39 -0.02 0.55 16 27 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.23 6.26 -2.39 -0.01 1.22 16 29 H 0.07 1.09 5.30 -2.39 -0.01 1.08 16 30 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.04 0.50 6.36 -2.39 -0.02 0.48 16 32 H 0.08 1.54 6.75 -2.39 -0.02 1.52 16 33 H 0.08 1.99 7.36 -2.39 -0.02 1.97 16 34 H 0.42 12.35 7.99 -96.75 -0.77 11.58 16 35 H 0.12 5.11 8.14 -2.39 -0.02 5.09 16 36 H 0.13 4.28 8.09 -2.39 -0.02 4.26 16 37 H 0.27 14.17 8.32 -92.71 -0.77 13.40 16 38 H 0.08 3.42 8.14 -2.38 -0.02 3.40 16 39 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.06 1.51 7.75 -2.39 -0.02 1.49 16 43 H 0.07 1.52 7.33 -2.39 -0.02 1.51 16 44 H 0.08 1.04 5.86 -2.38 -0.01 1.03 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.08 1.04 5.13 -2.39 -0.01 1.03 16 49 H 0.08 1.07 7.67 -2.39 -0.02 1.05 16 Total: -1.00 -70.35 383.39 -2.00 -72.35 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.17 Total: 31.31 kcal Atomic # 6 Polarization: -67.17 SS G_CDS: 4.84 Total: -62.33 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -4.31 Total: -97.60 kcal Atomic # 8 Polarization: -95.11 SS G_CDS: -4.44 Total: -99.55 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 108.65 SS G_CDS: -0.28 Total: 108.37 kcal Total: -70.35 -2.00 -72.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331705430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.066 kcal (2) G-P(sol) polarization free energy of solvation -70.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds