Wall clock time and date at job start Tue Mar 31 2020 16:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.45488 * 2 1 4 4 C 1.54377 * 110.41191 * 237.58829 * 2 1 3 5 5 C 1.54261 * 105.06239 * 217.36473 * 4 2 1 6 6 H 1.08996 * 110.31857 * 118.89364 * 5 4 2 7 7 N 1.46491 * 110.32767 * 241.00388 * 5 4 2 8 8 S 1.65595 * 120.00266 * 215.00038 * 7 5 4 9 9 O 1.42105 * 104.27906 * 181.07056 * 8 7 5 10 10 O 1.42104 * 104.27710 * 308.92865 * 8 7 5 11 11 C 1.81401 * 104.44883 * 65.00049 * 8 7 5 12 12 C 1.53008 * 109.47068 * 180.02562 * 11 8 7 13 13 C 1.53002 * 109.46544 * 299.99494 * 12 11 8 14 14 C 1.52996 * 109.47437 * 59.99400 * 12 11 8 15 15 C 1.50699 * 109.46890 * 179.97438 * 12 11 8 16 16 H 1.07999 * 120.00312 * 359.97438 * 15 12 11 17 17 C 1.37878 * 119.99800 * 179.97438 * 15 12 11 18 18 N 1.31519 * 120.00103 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 120.00009 * 180.02562 * 17 15 12 20 20 H 1.48493 * 109.47592 * 59.99678 * 19 17 15 21 21 H 1.48501 * 109.47441 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47075 * 299.99783 * 19 17 15 23 23 C 1.54378 * 105.05823 * 0.02562 * 5 4 2 24 24 N 1.48555 * 110.41235 * 122.41560 * 2 1 3 25 25 C 1.46908 * 111.00086 * 277.82105 * 24 2 1 26 26 C 1.52997 * 117.50007 * 168.70847 * 25 24 2 27 27 C 1.52995 * 117.49599 * 237.32988 * 25 24 2 28 28 H 1.09002 * 109.46879 * 297.58282 * 1 2 3 29 29 H 1.08996 * 109.47272 * 57.58794 * 1 2 3 30 30 H 1.09002 * 109.46730 * 177.58288 * 1 2 3 31 31 H 1.08999 * 110.32395 * 336.26866 * 4 2 1 32 32 H 1.09001 * 110.32467 * 98.36976 * 4 2 1 33 33 H 0.97004 * 120.00056 * 34.99663 * 7 5 4 34 34 H 1.09000 * 109.46880 * 299.99607 * 11 8 7 35 35 H 1.08994 * 109.47786 * 60.00153 * 11 8 7 36 36 H 1.09003 * 109.47415 * 60.00060 * 13 12 11 37 37 H 1.09003 * 109.46952 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.47445 * 300.00385 * 13 12 11 39 39 H 1.09000 * 109.46936 * 60.00563 * 14 12 11 40 40 H 1.09003 * 109.47121 * 180.02562 * 14 12 11 41 41 H 1.08999 * 109.47241 * 300.00591 * 14 12 11 42 42 H 0.97000 * 119.99993 * 179.97438 * 18 17 15 43 43 H 1.09000 * 110.41101 * 265.07551 * 23 5 4 44 44 H 1.09000 * 110.41060 * 142.62976 * 23 5 4 45 45 H 1.08999 * 115.55764 * 23.01929 * 25 24 2 46 46 H 1.08999 * 117.49800 * 359.97438 * 26 25 24 47 47 H 1.08999 * 117.49671 * 214.98323 * 26 25 24 48 48 H 1.09007 * 117.49857 * 145.01973 * 27 25 24 49 49 H 1.08996 * 117.52216 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0685 -0.7755 -1.2214 5 6 3.3179 -1.5188 -0.7055 6 1 3.1861 -2.5960 -0.8067 7 7 4.5088 -1.0815 -1.4380 8 16 5.7190 -2.1616 -1.7710 9 8 6.6982 -1.3911 -2.4544 10 8 6.0057 -2.7645 -0.5165 11 6 4.9563 -3.3635 -2.8954 12 6 5.9867 -4.4271 -3.2803 13 6 7.1735 -3.7587 -3.9771 14 6 6.4735 -5.1452 -2.0201 15 6 5.3528 -5.4259 -4.2139 16 1 4.3184 -5.3136 -4.5035 17 6 6.0934 -6.4831 -4.6984 18 7 7.3532 -6.6196 -4.3462 19 14 5.3080 -7.7208 -5.8562 20 1 4.8350 -7.0238 -7.0792 21 1 6.3079 -8.7532 -6.2297 22 1 4.1563 -8.3698 -5.1798 23 6 3.4288 -1.1303 0.7845 24 7 2.0482 -0.7463 1.1753 25 6 2.0569 0.1013 2.3752 26 6 2.3085 -0.5818 3.7209 27 6 3.3938 0.2952 3.0933 28 1 -0.3633 0.4759 0.9109 29 1 -0.3633 0.5508 -0.8675 30 1 -0.3633 -1.0268 -0.0433 31 1 1.3236 -1.4879 -1.5760 32 1 2.3400 -0.0842 -2.0192 33 1 4.5884 -0.1593 -1.7280 34 1 4.1110 -3.8399 -2.3989 35 1 4.6091 -2.8519 -3.7931 36 1 7.6318 -3.0364 -3.3015 37 1 7.9074 -4.5164 -4.2517 38 1 6.8267 -3.2470 -4.8749 39 1 5.6279 -5.6214 -1.5237 40 1 7.2079 -5.9026 -2.2943 41 1 6.9318 -4.4230 -1.3445 42 1 7.8741 -7.3636 -4.6868 43 1 4.1068 -0.2858 0.9077 44 1 3.7688 -1.9812 1.3749 45 1 1.3666 0.9447 2.3601 46 1 2.4672 -1.6602 3.7160 47 1 1.7837 -0.1878 4.5912 48 1 3.5832 1.2663 3.5509 49 1 4.2670 -0.2063 2.6762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331818549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:14 Heat of formation + Delta-G solvation = -38.703050 kcal Electronic energy + Delta-G solvation = -28006.713467 eV Core-core repulsion = 24289.907357 eV Total energy + Delta-G solvation = -3716.806110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.00970 -36.78651 -36.45894 -36.28080 -35.31292 -34.11351 -31.67383 -30.86390 -28.94998 -26.65898 -25.81546 -25.72155 -25.23244 -22.92818 -22.23372 -20.72959 -19.97483 -19.65355 -18.85731 -17.44927 -17.12738 -15.98702 -15.55597 -15.41121 -15.32324 -15.17962 -14.74302 -14.58226 -14.33720 -13.37753 -13.25811 -13.15191 -12.99737 -12.66826 -12.51122 -12.31944 -12.17765 -12.08216 -11.87703 -11.72064 -11.47008 -11.44105 -11.24333 -11.08820 -11.05938 -10.94767 -10.84158 -10.78281 -10.68864 -10.44046 -10.40068 -10.27803 -10.12149 -9.67077 -9.65029 -9.30011 -8.69763 -8.49819 -8.40361 -6.03845 -4.16023 0.84174 3.11272 3.26793 3.32375 3.33886 3.47278 3.83804 4.23406 4.30863 4.36093 4.45532 4.67788 4.69691 4.75739 4.80387 4.91916 5.01264 5.14471 5.20117 5.21576 5.31795 5.32742 5.46610 5.55931 5.60682 5.66803 5.69780 5.75056 5.75434 5.80180 5.93029 5.96653 6.03929 6.10414 6.36795 6.63123 6.69836 6.78976 6.83263 6.89802 7.00989 7.10788 7.31016 7.49788 7.67194 7.97563 8.08839 8.32347 8.82265 9.49436 10.97446 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018497 B = 0.003233 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.356066 B = 8659.594119 C = 9147.149519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.058 3.942 3 H 0.055 0.945 4 C -0.129 4.129 5 C 0.150 3.850 6 H 0.099 0.901 7 N -1.123 6.123 8 S 2.591 3.409 9 O -0.966 6.966 10 O -0.961 6.961 11 C -0.581 4.581 12 C 0.083 3.917 13 C -0.164 4.164 14 C -0.163 4.163 15 C -0.503 4.503 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.015 3.985 24 N -0.475 5.475 25 C 0.008 3.992 26 C -0.166 4.166 27 C -0.215 4.215 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.411 0.589 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.027 0.973 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.985 14.168 9.997 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.050 4.050 3 H 0.073 0.927 4 C -0.169 4.169 5 C 0.041 3.959 6 H 0.117 0.883 7 N -0.879 5.879 8 S 2.689 3.311 9 O -0.956 6.956 10 O -0.951 6.951 11 C -0.715 4.715 12 C 0.080 3.920 13 C -0.222 4.222 14 C -0.221 4.221 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.137 4.137 18 N -0.522 5.522 19 Si 0.724 3.276 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.114 4.114 24 N -0.198 5.198 25 C -0.102 4.102 26 C -0.203 4.203 27 C -0.254 4.254 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.244 0.756 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.046 0.954 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.130 0.870 46 H 0.117 0.883 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.288 13.459 10.519 20.475 hybrid contribution -0.482 0.239 -1.208 1.322 sum -11.770 13.698 9.312 20.319 Atomic orbital electron populations 1.21727 0.93535 1.02753 1.01353 1.22663 0.96232 0.96013 0.90097 0.92703 1.22783 0.97047 0.99808 0.97231 1.21377 0.84503 0.99615 0.90415 0.88298 1.56061 1.35783 1.24656 1.71390 1.05717 0.73969 0.75193 0.76251 1.93555 1.56519 1.69199 1.76315 1.93551 1.82578 1.77760 1.41213 1.30527 1.12442 1.14458 1.14072 1.17921 0.89436 0.90033 0.94567 1.22278 1.00685 0.99885 0.99311 1.22272 1.02008 1.02158 0.95671 1.20907 0.97342 1.08590 1.27418 0.92346 1.24938 0.94885 0.97610 0.96288 1.69793 1.07315 1.30860 1.44206 0.86593 0.79007 0.80853 0.81146 1.20282 1.21189 1.20247 1.23797 0.89834 1.01771 0.95998 1.65272 1.17899 1.34860 1.01721 1.22754 0.99177 0.98192 0.90099 1.23017 1.02087 0.99731 0.95511 1.23543 0.94206 1.02068 1.05567 0.92745 0.92243 0.91536 0.89553 0.90032 0.75631 0.86510 0.86247 0.95414 0.88626 0.94492 0.94465 0.88687 0.95314 0.92678 0.91931 0.88792 0.86995 0.88264 0.88727 0.88912 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.37 37.16 0.35 -0.68 16 2 C 0.06 0.52 2.79 -66.07 -0.18 0.33 16 3 H 0.05 0.47 8.00 -51.93 -0.42 0.06 16 4 C -0.13 -1.20 6.31 -25.35 -0.16 -1.36 16 5 C 0.15 1.76 3.49 -66.55 -0.23 1.53 16 6 H 0.10 1.19 7.26 -51.93 -0.38 0.82 16 7 N -1.12 -14.54 5.33 -3.72 -0.02 -14.56 16 8 S 2.59 46.53 4.42 -107.50 -0.47 46.05 16 9 O -0.97 -19.93 15.70 -57.54 -0.90 -20.84 16 10 O -0.96 -19.55 15.43 -57.54 -0.89 -20.44 16 11 C -0.58 -11.07 4.92 37.16 0.18 -10.88 16 12 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 13 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 14 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 15 C -0.50 -13.12 8.01 -34.44 -0.28 -13.39 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 18 N -0.88 -24.06 9.35 55.43 0.52 -23.55 16 19 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C 0.02 0.18 4.87 -2.19 -0.01 0.17 16 24 N -0.47 -4.94 5.27 -214.26 -1.13 -6.06 16 25 C 0.01 0.07 5.79 -67.71 -0.39 -0.32 16 26 C -0.17 -1.47 10.42 -26.73 -0.28 -1.75 16 27 C -0.22 -1.98 9.31 -26.74 -0.25 -2.23 16 28 H 0.05 0.39 7.73 -51.93 -0.40 -0.01 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.09 0.75 7.82 -51.93 -0.41 0.34 16 32 H 0.08 0.67 7.80 -51.93 -0.41 0.26 16 33 H 0.41 4.46 8.66 -34.46 -0.30 4.16 16 34 H 0.12 2.00 7.50 -51.92 -0.39 1.61 16 35 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 36 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 37 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 38 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 41 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.06 0.74 6.33 -51.93 -0.33 0.41 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.11 0.90 7.64 -51.93 -0.40 0.50 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.10 1.10 5.96 -51.93 -0.31 0.79 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -31.04 379.90 -11.31 -42.35 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -8.27 Total: 8.28 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: -0.85 Total: -32.49 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.63 Total: -44.17 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.79 Total: -41.27 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 46.53 SS G_CDS: -0.47 Total: 46.05 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.04 -11.31 -42.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331818549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.645 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds