Wall clock time and date at job start Tue Mar 31 2020 17:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46687 * 2 1 4 4 C 1.46500 * 120.00182 * 275.24482 * 3 2 1 5 5 C 1.50694 * 109.47723 * 275.00548 * 4 3 2 6 6 H 1.08005 * 119.99917 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00529 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00404 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99550 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47105 * 90.00458 * 9 7 5 11 11 H 1.48500 * 109.47108 * 209.99819 * 9 7 5 12 12 H 1.48494 * 109.47236 * 329.99937 * 9 7 5 13 13 S 1.65596 * 119.99928 * 95.25498 * 3 2 1 14 14 O 1.42098 * 106.40580 * 156.20951 * 13 3 2 15 15 O 1.42102 * 106.40511 * 23.28567 * 13 3 2 16 16 N 1.65603 * 107.21705 * 269.74871 * 13 3 2 17 17 C 1.46932 * 120.66481 * 95.85398 * 16 13 3 18 18 C 1.53170 * 108.74703 * 126.24718 * 17 16 13 19 19 C 1.53089 * 109.36340 * 54.81001 * 18 17 16 20 20 H 1.08994 * 109.55941 * 58.90340 * 19 18 17 21 21 C 1.53087 * 109.22621 * 179.21463 * 19 18 17 22 22 C 1.53002 * 109.37369 * 59.30801 * 21 19 18 23 23 C 1.52986 * 109.52823 * 60.09463 * 22 21 19 24 24 C 1.53017 * 109.52656 * 300.20515 * 23 22 21 25 25 C 1.52973 * 109.40415 * 59.84772 * 24 23 22 26 26 H 1.09003 * 109.46563 * 59.65319 * 25 24 23 27 27 C 1.46920 * 120.66215 * 275.83483 * 16 13 3 28 28 H 1.08999 * 109.47532 * 54.23842 * 1 2 3 29 29 H 1.09005 * 109.46837 * 174.24155 * 1 2 3 30 30 H 1.08997 * 109.47052 * 294.23566 * 1 2 3 31 31 H 1.09002 * 109.47313 * 240.00611 * 2 1 3 32 32 H 1.08997 * 109.47446 * 120.00120 * 2 1 3 33 33 H 1.09006 * 109.47106 * 35.00971 * 4 3 2 34 34 H 1.09004 * 109.46891 * 154.99937 * 4 3 2 35 35 H 0.97001 * 120.00254 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.59162 * 246.02581 * 17 16 13 37 37 H 1.09001 * 109.59060 * 6.46801 * 17 16 13 38 38 H 1.09003 * 109.48749 * 174.76894 * 18 17 16 39 39 H 1.09001 * 109.48981 * 294.83664 * 18 17 16 40 40 H 1.08999 * 109.46272 * 299.34691 * 21 19 18 41 41 H 1.08995 * 109.49377 * 179.29396 * 21 19 18 42 42 H 1.08994 * 109.46468 * 300.07555 * 22 21 19 43 43 H 1.08999 * 109.45809 * 180.10239 * 22 21 19 44 44 H 1.09001 * 109.46473 * 60.22082 * 23 22 21 45 45 H 1.09001 * 109.46581 * 180.20327 * 23 22 21 46 46 H 1.08998 * 109.48897 * 179.83083 * 24 23 22 47 47 H 1.08999 * 109.47991 * 299.87821 * 24 23 22 48 48 H 1.09003 * 109.57624 * 113.74837 * 27 16 13 49 49 H 1.09004 * 109.67810 * 353.44068 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1530 2.1106 -1.2634 5 6 3.4869 1.7917 -1.8878 6 1 4.1663 1.1132 -1.3932 7 6 3.8398 2.3652 -3.0909 8 7 5.0037 2.0865 -3.6361 9 14 2.6638 3.5371 -3.9474 10 1 2.9290 4.9254 -3.4916 11 1 2.8628 3.4521 -5.4165 12 1 1.2651 3.1655 -3.6150 13 16 2.4180 2.1181 1.4281 14 8 3.3373 3.1517 1.1028 15 8 2.7135 1.0764 2.3483 16 7 1.0529 2.8670 1.9922 17 6 0.1870 2.2039 2.9768 18 6 -0.0042 3.1401 4.1738 19 6 -0.5350 4.4896 3.6831 20 1 -1.4808 4.3420 3.1619 21 6 -0.7434 5.4161 4.8838 22 6 0.5868 5.6058 5.6155 23 6 1.6096 6.2291 4.6637 24 6 1.8140 5.3088 3.4585 25 6 0.4819 5.1224 2.7298 26 1 0.1120 6.0917 2.3955 27 6 0.6838 4.2078 1.5186 28 1 -0.3634 0.6006 -0.8339 29 1 -0.3633 -1.0225 -0.1031 30 1 -0.3633 0.4218 0.9371 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.3537 1.8127 -1.9420 34 1 2.0876 3.1819 -1.0732 35 1 5.2520 2.4903 -4.4824 36 1 -0.7808 1.9864 2.5246 37 1 0.6543 1.2768 3.3088 38 1 -0.7186 2.6997 4.8695 39 1 0.9514 3.2864 4.6774 40 1 -1.4719 4.9726 5.5626 41 1 -1.1095 6.3828 4.5380 42 1 0.9532 4.6387 5.9596 43 1 0.4396 6.2639 6.4718 44 1 1.2452 7.1983 4.3230 45 1 2.5579 6.3605 5.1850 46 1 2.5405 5.7549 2.7794 47 1 2.1807 4.3404 3.7987 48 1 -0.2418 4.1508 0.9457 49 1 1.4790 4.6064 0.8886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336929151.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:16 Heat of formation + Delta-G solvation = -93.911104 kcal Electronic energy + Delta-G solvation = -29264.410025 eV Core-core repulsion = 25545.209913 eV Total energy + Delta-G solvation = -3719.200111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.17278 -36.75517 -36.16344 -35.73374 -35.18043 -32.58760 -32.39523 -30.98347 -30.26020 -29.30339 -27.12886 -24.86893 -23.22924 -22.90113 -22.35544 -21.53591 -21.23266 -19.04163 -17.81590 -17.35751 -16.87950 -16.66485 -15.89664 -15.64070 -15.13892 -14.91345 -14.32976 -14.10970 -14.05412 -13.80639 -13.59088 -13.40587 -13.01319 -12.87296 -12.74781 -12.51265 -12.39388 -12.12701 -12.02510 -11.95626 -11.78333 -11.50630 -11.43118 -11.23676 -11.13431 -11.10533 -10.96602 -10.94470 -10.73956 -10.48008 -10.37697 -10.26479 -10.19816 -10.06787 -9.92080 -9.54688 -8.80373 -8.58875 -8.10596 -6.07782 -4.06880 1.13355 3.26274 3.31381 3.32886 3.43086 4.01598 4.38111 4.49774 4.52106 4.59184 4.81335 5.01118 5.04445 5.07426 5.10645 5.21554 5.25112 5.33531 5.36438 5.39547 5.44045 5.53569 5.59647 5.62957 5.67249 5.67937 5.73262 5.79059 5.81305 5.89376 5.91497 5.95043 6.05171 6.07138 6.14859 6.17630 6.23399 6.29517 6.41517 6.48054 6.49244 6.52828 6.70874 6.81819 7.11791 7.44121 7.59051 8.49791 8.97273 9.51323 11.05891 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016126 B = 0.004557 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.926014 B = 6142.800296 C = 6785.071959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.116 3.884 3 N -0.986 5.986 4 C 0.229 3.771 5 C -0.530 4.530 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.778 3.222 14 O -0.959 6.959 15 O -0.993 6.993 16 N -1.008 6.008 17 C 0.120 3.880 18 C -0.130 4.130 19 C -0.079 4.079 20 H 0.070 0.930 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.091 4.091 26 H 0.078 0.922 27 C 0.124 3.876 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.366 4.558 15.570 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 N -0.827 5.827 4 C 0.106 3.894 5 C -0.569 4.569 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.788 3.212 14 O -0.942 6.942 15 O -0.977 6.977 16 N -0.847 5.847 17 C -0.006 4.006 18 C -0.169 4.169 19 C -0.097 4.097 20 H 0.089 0.911 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.111 4.111 26 H 0.096 0.904 27 C -0.002 4.002 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.376 4.583 15.800 21.847 hybrid contribution -0.881 0.654 -0.860 1.394 sum -15.256 5.237 14.939 21.986 Atomic orbital electron populations 1.22260 0.97229 1.01674 1.01783 1.21166 0.92975 0.82990 1.03862 1.57571 1.81109 1.21493 1.22501 1.19382 0.98162 0.90756 0.81114 1.21376 1.00983 1.28802 1.05786 0.90493 1.24862 0.95058 0.96084 0.96909 1.69895 1.20753 1.43969 1.18738 0.86939 0.81874 0.82231 0.79199 1.19797 1.20978 1.18956 1.02090 0.73292 0.73172 0.72688 1.93624 1.58871 1.57756 1.83989 1.93506 1.83284 1.57627 1.63321 1.58391 1.44962 1.26387 1.54944 1.21367 0.94753 0.95800 0.88704 1.22036 1.02064 0.95311 0.97473 1.21095 0.98191 0.94699 0.95737 0.91123 1.21563 0.97117 0.99395 0.96881 1.21586 0.95549 1.01028 0.97821 1.21524 0.98822 0.98779 0.96403 1.21628 0.96894 1.00148 0.96987 1.21433 0.95973 0.98454 0.95256 0.90358 1.21408 1.01590 0.81451 0.95740 0.92153 0.92082 0.93293 0.89550 0.90390 0.94988 0.95605 0.92542 0.91889 0.89121 0.91236 0.90804 0.92217 0.92110 0.91705 0.92488 0.92176 0.92190 0.91250 0.91774 0.91702 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.23 37.16 0.38 -1.89 16 2 C 0.12 1.99 6.40 -4.04 -0.03 1.97 16 3 N -0.99 -19.93 2.83 -115.66 -0.33 -20.26 16 4 C 0.23 5.34 4.17 -5.20 -0.02 5.32 16 5 C -0.53 -15.10 9.94 -34.44 -0.34 -15.44 16 6 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 9 Si 0.87 20.94 27.47 -169.99 -4.67 16.27 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 13 S 2.78 54.65 6.08 -107.50 -0.65 53.99 16 14 O -0.96 -22.49 15.89 -57.17 -0.91 -23.39 16 15 O -0.99 -20.56 15.14 -57.17 -0.87 -21.43 16 16 N -1.01 -14.70 2.81 -113.58 -0.32 -15.02 16 17 C 0.12 1.40 6.00 -3.72 -0.02 1.38 16 18 C -0.13 -1.30 4.62 -26.60 -0.12 -1.42 16 19 C -0.08 -0.73 2.48 -90.49 -0.22 -0.96 16 20 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 21 C -0.11 -0.91 5.45 -26.69 -0.15 -1.06 16 22 C -0.12 -1.07 5.64 -26.74 -0.15 -1.22 16 23 C -0.12 -1.17 5.92 -26.73 -0.16 -1.32 16 24 C -0.12 -1.46 4.82 -26.74 -0.13 -1.59 16 25 C -0.09 -1.01 2.45 -90.54 -0.22 -1.23 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 C 0.12 1.64 5.84 -3.76 -0.02 1.62 16 28 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 31 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 32 H 0.08 1.29 6.91 -51.93 -0.36 0.93 16 33 H 0.03 0.71 7.07 -51.93 -0.37 0.34 16 34 H 0.03 0.60 7.05 -51.93 -0.37 0.23 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.06 0.62 7.74 -51.92 -0.40 0.22 16 37 H 0.09 1.13 6.80 -51.93 -0.35 0.77 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.82 4.73 -51.93 -0.25 0.58 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.59 6.40 -51.93 -0.33 0.26 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.06 0.88 5.98 -51.93 -0.31 0.57 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.09 1.40 7.08 -51.93 -0.37 1.03 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -33.46 373.43 -11.20 -44.66 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.56 Total: 0.15 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.30 Total: -13.83 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.13 Total: -62.05 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.77 Total: -44.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: 54.65 SS G_CDS: -0.65 Total: 53.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.46 -11.20 -44.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336929151.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.250 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds