Wall clock time and date at job start Tue Mar 31 2020 17:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.47059 * 2 1 4 4 C 1.46498 * 120.00056 * 274.99493 * 3 2 1 5 5 C 1.50698 * 109.47521 * 275.00671 * 4 3 2 6 6 H 1.08004 * 119.99944 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00251 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99968 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47179 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47151 * 120.00001 * 9 7 5 12 12 H 1.48501 * 109.46859 * 239.99941 * 9 7 5 13 13 S 1.65604 * 120.00104 * 94.99932 * 3 2 1 14 14 O 1.42088 * 106.40248 * 336.45874 * 13 3 2 15 15 O 1.42104 * 106.40152 * 203.53649 * 13 3 2 16 16 N 1.65600 * 107.21763 * 89.99916 * 13 3 2 17 17 C 1.46505 * 119.99956 * 64.99774 * 16 13 3 18 18 H 1.08997 * 115.56081 * 0.69462 * 17 16 13 19 19 C 1.53006 * 117.49532 * 146.37684 * 17 16 13 20 20 C 1.52995 * 117.49768 * 214.99852 * 17 16 13 21 21 H 1.09002 * 117.52204 * 145.03242 * 20 17 16 22 22 C 1.53002 * 117.50134 * 0.02562 * 20 17 16 23 23 C 1.52997 * 109.46817 * 59.98497 * 22 20 17 24 24 C 1.52999 * 109.47317 * 179.97438 * 23 22 20 25 25 C 1.53005 * 109.47159 * 300.00546 * 24 23 22 26 26 C 1.52997 * 109.47452 * 59.99536 * 25 24 23 27 27 C 1.53000 * 109.47233 * 179.97438 * 22 20 17 28 28 H 1.08993 * 109.46948 * 60.00313 * 1 2 3 29 29 H 1.09002 * 109.46786 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47117 * 300.00297 * 1 2 3 31 31 H 1.09001 * 109.47117 * 239.99703 * 2 1 3 32 32 H 1.09006 * 109.46725 * 119.99792 * 2 1 3 33 33 H 1.09007 * 109.46848 * 35.00593 * 4 3 2 34 34 H 1.09000 * 109.47680 * 155.00025 * 4 3 2 35 35 H 0.97002 * 120.00080 * 180.02562 * 8 7 5 36 36 H 0.96996 * 119.99992 * 245.00055 * 16 13 3 37 37 H 1.09000 * 117.49641 * 0.02562 * 19 17 16 38 38 H 1.08999 * 117.51636 * 214.96995 * 19 17 16 39 39 H 1.09002 * 109.47070 * 299.98677 * 22 20 17 40 40 H 1.08996 * 109.47853 * 300.00202 * 23 22 20 41 41 H 1.09002 * 109.47153 * 60.00231 * 23 22 20 42 42 H 1.09000 * 109.47486 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.46716 * 60.00091 * 24 23 22 44 44 H 1.09002 * 109.46935 * 299.99411 * 25 24 23 45 45 H 1.09001 * 109.46812 * 179.97438 * 25 24 23 46 46 H 1.08993 * 109.47194 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.46695 * 59.99734 * 26 25 24 48 48 H 1.08992 * 109.47399 * 300.00166 * 27 22 20 49 49 H 1.09004 * 109.46724 * 60.00652 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1115 -1.3836 7 6 3.8526 2.3604 -3.0849 8 7 3.0273 3.1846 -3.6925 9 14 5.5096 1.9643 -3.8511 10 1 6.2464 1.0181 -2.9754 11 1 5.3029 1.3461 -5.1853 12 1 6.2969 3.2145 -4.0013 13 16 2.4122 2.1202 1.4287 14 8 1.6869 1.4416 2.4447 15 8 2.3057 3.5186 1.1998 16 7 4.0144 1.8137 1.7138 17 6 5.0351 2.3524 0.8113 18 1 4.6605 2.9540 -0.0167 19 6 6.3793 2.7519 1.4234 20 6 6.2765 1.4951 0.5569 21 1 6.7191 1.5325 -0.4386 22 6 6.3567 0.1406 1.2638 23 6 5.1712 -0.7278 0.8381 24 6 5.2516 -2.0826 1.5445 25 6 6.5584 -2.7804 1.1620 26 6 7.7440 -1.9121 1.5876 27 6 7.6633 -0.5577 0.8815 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.3618 1.8096 -1.9453 34 1 2.0923 3.1802 -1.0757 35 1 3.2788 3.5866 -4.5387 36 1 4.2771 1.2775 2.4782 37 1 6.5043 2.6135 2.4973 38 1 6.8893 3.6162 0.9980 39 1 6.3275 0.2916 2.3429 40 1 4.2402 -0.2306 1.1103 41 1 5.2004 -0.8789 -0.2410 42 1 4.4073 -2.7014 1.2409 43 1 5.2227 -1.9319 2.6237 44 1 6.5874 -2.9311 0.0828 45 1 6.6159 -3.7454 1.6656 46 1 8.6749 -2.4094 1.3155 47 1 7.7149 -1.7614 2.6668 48 1 7.6924 -0.7088 -0.1975 49 1 8.5080 0.0609 1.1848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337065176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:57 Heat of formation + Delta-G solvation = -81.973035 kcal Electronic energy + Delta-G solvation = -29432.806118 eV Core-core repulsion = 25714.123680 eV Total energy + Delta-G solvation = -3718.682438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.27920 -36.81403 -36.49752 -36.00510 -35.19681 -32.72679 -32.08078 -30.53371 -30.09263 -29.93251 -26.62369 -23.20448 -23.14332 -22.49288 -21.84318 -21.52416 -20.01244 -19.66761 -18.76069 -17.22409 -16.85727 -16.32646 -15.85353 -15.29285 -15.05655 -14.64270 -14.39636 -14.04675 -13.92225 -13.78402 -13.43802 -13.18743 -12.89721 -12.56623 -12.21314 -12.16447 -12.02319 -11.97882 -11.71081 -11.60967 -11.52696 -11.38787 -11.30867 -11.18599 -11.08408 -11.02252 -10.96091 -10.88888 -10.51444 -10.43013 -10.32540 -10.15963 -10.06569 -9.96810 -9.70280 -9.44973 -8.52574 -8.40073 -8.05226 -6.12762 -4.18342 1.29481 3.21040 3.30378 3.31453 3.51554 4.12066 4.25147 4.33746 4.70510 4.84598 4.86234 5.02371 5.15864 5.20019 5.28275 5.36356 5.41463 5.45272 5.49952 5.63250 5.65207 5.67027 5.71437 5.75565 5.78429 5.80895 5.87009 5.95951 6.08573 6.08734 6.12276 6.19527 6.29826 6.30493 6.32908 6.41312 6.48902 6.62376 6.65487 6.68715 6.74146 6.83546 7.28796 7.38882 7.48352 7.68183 7.86150 8.15172 8.89179 9.47297 10.95230 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009016 B = 0.006918 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.937105 B = 4046.312476 C = 5308.997532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.988 5.988 4 C 0.242 3.758 5 C -0.538 4.538 6 H 0.073 0.927 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.885 3.115 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.284 1.284 13 S 2.786 3.214 14 O -1.001 7.001 15 O -0.978 6.978 16 N -1.098 6.098 17 C 0.114 3.886 18 H 0.157 0.843 19 C -0.196 4.196 20 C -0.156 4.156 21 H 0.108 0.892 22 C -0.048 4.048 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.117 4.117 27 C -0.112 4.112 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.263 0.737 36 H 0.406 0.594 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.329 -8.802 9.174 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.830 5.830 4 C 0.120 3.880 5 C -0.578 4.578 6 H 0.091 0.909 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.210 1.210 13 S 2.794 3.206 14 O -0.985 6.985 15 O -0.962 6.962 16 N -0.852 5.852 17 C 0.006 3.994 18 H 0.174 0.826 19 C -0.236 4.236 20 C -0.176 4.176 21 H 0.126 0.874 22 C -0.066 4.066 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.155 4.155 27 C -0.149 4.149 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.238 0.762 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.623 -8.042 9.406 13.593 hybrid contribution 1.416 -0.652 -0.604 1.672 sum 7.039 -8.694 8.802 14.234 Atomic orbital electron populations 1.22213 0.97057 1.01329 1.02366 1.20961 0.93511 0.82888 1.02064 1.57664 1.78439 1.22869 1.24046 1.19230 0.97495 0.92196 0.79058 1.21721 1.02241 1.27905 1.05903 0.90898 1.24938 0.96975 0.94933 0.96914 1.69948 1.35831 1.29922 1.16975 0.86653 0.84311 0.78320 0.79450 1.19243 1.21160 1.20983 1.01738 0.72477 0.73728 0.72667 1.93548 1.70335 1.76356 1.58260 1.93584 1.85789 1.31131 1.85684 1.55697 1.25094 1.67228 1.37202 1.21604 0.83117 0.99856 0.94802 0.82573 1.23511 1.02059 0.98959 0.99059 1.22778 1.03429 0.91195 1.00211 0.87376 1.20593 0.94876 0.92586 0.98566 1.21712 0.98547 0.94287 1.01148 1.21570 0.97132 0.96984 1.00114 1.21536 0.95004 0.97931 1.01199 1.21509 0.97845 0.96043 1.00093 1.21552 0.97276 0.95508 1.00604 0.92071 0.92430 0.92706 0.90198 0.92001 0.94416 0.93233 0.92718 0.76154 0.89145 0.88495 0.91894 0.90964 0.91273 0.92139 0.92491 0.92040 0.92674 0.92541 0.92377 0.91898 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.13 2.21 6.06 -4.04 -0.02 2.18 16 3 N -0.99 -19.28 2.82 -115.66 -0.33 -19.61 16 4 C 0.24 5.66 5.43 -5.20 -0.03 5.64 16 5 C -0.54 -12.89 7.41 -34.44 -0.26 -13.14 16 6 H 0.07 1.65 7.00 -52.48 -0.37 1.28 16 7 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -24.41 13.29 55.43 0.74 -23.67 16 9 Si 0.88 19.65 29.54 -169.99 -5.02 14.63 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 S 2.79 53.81 6.08 -107.50 -0.65 53.16 16 14 O -1.00 -19.96 17.11 -57.17 -0.98 -20.93 16 15 O -0.98 -22.50 16.44 -57.17 -0.94 -23.44 16 16 N -1.10 -17.54 3.90 -4.89 -0.02 -17.56 16 17 C 0.11 1.90 5.08 -67.93 -0.34 1.55 16 18 H 0.16 3.10 6.52 -51.93 -0.34 2.76 16 19 C -0.20 -2.71 10.10 -26.73 -0.27 -2.98 16 20 C -0.16 -2.28 5.10 -90.62 -0.46 -2.74 16 21 H 0.11 1.72 8.11 -51.93 -0.42 1.30 16 22 C -0.05 -0.60 1.74 -90.62 -0.16 -0.76 16 23 C -0.12 -1.60 4.93 -26.73 -0.13 -1.74 16 24 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 25 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 26 C -0.12 -1.20 5.92 -26.76 -0.16 -1.35 16 27 C -0.11 -1.30 5.18 -26.76 -0.14 -1.44 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 32 H 0.06 0.93 7.51 -51.93 -0.39 0.54 16 33 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.05 1.30 6.91 -51.93 -0.36 0.94 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.41 5.49 7.65 -34.47 -0.26 5.23 16 37 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 0.75 7.64 -51.93 -0.40 0.36 16 40 H 0.07 1.03 5.45 -51.93 -0.28 0.75 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -28.94 390.22 -12.04 -40.97 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.71 Total: 8.99 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.01 Total: -18.41 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.39 Total: -60.84 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -1.92 Total: -44.38 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 53.81 SS G_CDS: -0.65 Total: 53.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.94 -12.04 -40.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337065176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.999 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds