Wall clock time and date at job start Tue Mar 31 2020 17:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46995 * 2 1 4 4 C 1.46494 * 120.00309 * 274.99919 * 3 2 1 5 5 C 1.50697 * 109.47020 * 275.00320 * 4 3 2 6 6 H 1.08002 * 120.00380 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99895 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00339 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00030 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47049 * 59.99208 * 9 7 5 11 11 H 1.48498 * 109.47349 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46731 * 299.99457 * 9 7 5 13 13 S 1.65605 * 119.99527 * 94.99885 * 3 2 1 14 14 O 1.42096 * 106.40590 * 336.45948 * 13 3 2 15 15 O 1.42108 * 106.39755 * 203.53861 * 13 3 2 16 16 N 1.65597 * 107.21939 * 90.00151 * 13 3 2 17 17 C 1.46499 * 119.99926 * 64.71969 * 16 13 3 18 18 H 1.09004 * 115.55437 * 359.69050 * 17 16 13 19 19 C 1.53006 * 117.50026 * 214.02542 * 17 16 13 20 20 C 1.52996 * 117.50110 * 145.36560 * 17 16 13 21 21 H 1.09010 * 117.49940 * 359.97438 * 20 17 16 22 22 C 1.53002 * 117.50192 * 214.98262 * 20 17 16 23 23 C 1.53004 * 109.47099 * 180.02562 * 22 20 17 24 24 C 1.52998 * 109.46978 * 179.97438 * 23 22 20 25 25 C 1.53002 * 109.46936 * 59.99744 * 24 23 22 26 26 C 1.52997 * 109.47391 * 299.99688 * 25 24 23 27 27 C 1.52990 * 109.47367 * 59.99377 * 22 20 17 28 28 H 1.08999 * 109.46869 * 59.99851 * 1 2 3 29 29 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47363 * 300.00357 * 1 2 3 31 31 H 1.08994 * 109.47346 * 240.00375 * 2 1 3 32 32 H 1.08999 * 109.46869 * 120.00149 * 2 1 3 33 33 H 1.09004 * 109.47032 * 35.00122 * 4 3 2 34 34 H 1.09000 * 109.47230 * 154.99632 * 4 3 2 35 35 H 0.96996 * 120.00481 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00224 * 245.00182 * 16 13 3 37 37 H 1.08998 * 117.49787 * 359.97438 * 19 17 16 38 38 H 1.09006 * 117.50051 * 145.01976 * 19 17 16 39 39 H 1.08999 * 109.46868 * 299.99192 * 22 20 17 40 40 H 1.08999 * 109.46574 * 299.99339 * 23 22 20 41 41 H 1.08996 * 109.47304 * 59.99215 * 23 22 20 42 42 H 1.08994 * 109.47545 * 300.00140 * 24 23 22 43 43 H 1.08999 * 109.46983 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.47489 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.47551 * 59.99759 * 25 24 23 46 46 H 1.08995 * 109.47310 * 300.00552 * 26 25 24 47 47 H 1.09001 * 109.47509 * 180.02562 * 26 25 24 48 48 H 1.09002 * 109.47311 * 300.00297 * 27 22 20 49 49 H 1.09005 * 109.46865 * 60.00025 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1583 2.1088 -1.2638 5 6 3.4948 1.7889 -1.8822 6 1 4.1724 1.1117 -1.3835 7 6 3.8529 2.3615 -3.0842 8 7 3.0281 3.1865 -3.6913 9 14 5.5094 1.9644 -3.8512 10 1 5.5986 0.5046 -4.1084 11 1 5.6513 2.7020 -5.1322 12 1 6.5948 2.3707 -2.9227 13 16 2.4121 2.1202 1.4288 14 8 1.6868 1.4415 2.4449 15 8 2.3056 3.5187 1.1999 16 7 4.0143 1.8137 1.7139 17 6 5.0346 2.3474 0.8082 18 1 4.6585 2.9313 -0.0320 19 6 6.2857 1.4982 0.5744 20 6 6.3712 2.7709 1.4206 21 1 6.4912 2.6528 2.4976 22 6 7.0777 3.9812 0.8068 23 6 8.3875 4.2403 1.5541 24 6 9.0943 5.4502 0.9399 25 6 8.1910 6.6800 1.0524 26 6 6.8813 6.4209 0.3051 27 6 6.1740 5.2105 0.9192 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3617 1.8098 -1.9452 34 1 2.0921 3.1803 -1.0755 35 1 3.2799 3.5890 -4.5371 36 1 4.2770 1.2774 2.4783 37 1 6.3498 0.5426 1.0948 38 1 6.7329 1.5237 -0.4194 39 1 7.2923 3.7827 -0.2433 40 1 8.1734 4.4387 2.6043 41 1 9.0311 3.3644 1.4736 42 1 9.3084 5.2516 -0.1103 43 1 10.0272 5.6351 1.4725 44 1 8.6947 7.5421 0.6152 45 1 7.9769 6.8787 2.1025 46 1 7.0954 6.2221 -0.7450 47 1 6.2379 7.2971 0.3849 48 1 5.2412 5.0257 0.3865 49 1 5.9595 5.4090 1.9693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337065178.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:11 Heat of formation + Delta-G solvation = -87.869444 kcal Electronic energy + Delta-G solvation = -28615.370164 eV Core-core repulsion = 24896.432039 eV Total energy + Delta-G solvation = -3718.938125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.08599 -36.83547 -36.53739 -36.00036 -35.19058 -32.74431 -32.30188 -30.56940 -29.94261 -29.71299 -26.63307 -23.19711 -23.11675 -22.60568 -21.72973 -21.42606 -20.10269 -19.60749 -18.81158 -17.15042 -16.83074 -16.36856 -16.00454 -15.37382 -15.11428 -14.47992 -14.17310 -14.07719 -13.89810 -13.85941 -13.33327 -12.99160 -12.86910 -12.50274 -12.40374 -12.06594 -12.01983 -11.98972 -11.69056 -11.59601 -11.55704 -11.45408 -11.29015 -11.25259 -11.06417 -10.97951 -10.96826 -10.87744 -10.49322 -10.40115 -10.31364 -10.18452 -10.03897 -9.93436 -9.76129 -9.42990 -8.52975 -8.47819 -8.06573 -6.13744 -4.20040 1.29834 3.21759 3.28741 3.29450 3.50908 4.11005 4.24776 4.32701 4.71692 4.89528 4.92476 5.03910 5.18685 5.22108 5.26736 5.35062 5.43801 5.47818 5.52410 5.66137 5.68211 5.69658 5.70973 5.77163 5.79064 5.80928 5.87822 5.97697 6.11169 6.13362 6.16939 6.26619 6.27595 6.32771 6.34162 6.44661 6.52065 6.63933 6.67450 6.69061 6.72628 6.86515 7.28664 7.37175 7.47218 7.67161 7.84338 8.13516 8.85990 9.45500 10.93949 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.005431 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.500529 B = 5154.459769 C = 6612.866537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.243 3.757 5 C -0.542 4.542 6 H 0.068 0.932 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.272 1.272 13 S 2.787 3.213 14 O -1.002 7.002 15 O -0.976 6.976 16 N -1.101 6.101 17 C 0.112 3.888 18 H 0.159 0.841 19 C -0.185 4.185 20 C -0.164 4.164 21 H 0.100 0.900 22 C -0.055 4.055 23 C -0.108 4.108 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.116 4.116 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.265 0.735 36 H 0.405 0.595 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.800 -0.650 8.699 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.120 3.880 5 C -0.582 4.582 6 H 0.086 0.914 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.197 1.197 13 S 2.795 3.205 14 O -0.986 6.986 15 O -0.960 6.960 16 N -0.854 5.854 17 C 0.004 3.996 18 H 0.176 0.824 19 C -0.224 4.224 20 C -0.185 4.185 21 H 0.118 0.882 22 C -0.074 4.074 23 C -0.146 4.146 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.153 4.153 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.236 0.764 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.086 0.113 8.917 11.390 hybrid contribution 1.373 -0.840 -0.517 1.691 sum 8.459 -0.727 8.400 11.943 Atomic orbital electron populations 1.22210 0.96983 1.01363 1.02379 1.20957 0.93583 0.82885 1.02092 1.57691 1.78488 1.22920 1.24124 1.19225 0.97416 0.92240 0.79080 1.21607 1.02298 1.28126 1.06137 0.91387 1.24924 0.97010 0.94848 0.96803 1.69918 1.35899 1.29613 1.17042 0.86754 0.84469 0.78556 0.78842 1.20239 1.21315 1.19740 1.01721 0.72433 0.73765 0.72614 1.93546 1.70370 1.76381 1.58283 1.93584 1.85759 1.30972 1.85655 1.55657 1.25163 1.67479 1.37122 1.21699 0.83073 1.00091 0.94778 0.82394 1.23475 1.03011 0.94638 1.01298 1.22878 1.01316 0.95753 0.98506 0.88200 1.20730 0.94033 0.93118 0.99523 1.21531 0.96208 0.97468 0.99378 1.21537 0.97875 0.95267 1.01038 1.21539 0.96250 0.97319 1.00484 1.21551 0.96124 0.98338 0.99815 1.21588 0.98942 0.93600 1.01210 0.92061 0.92381 0.92683 0.90203 0.92009 0.94387 0.93136 0.92535 0.76358 0.89151 0.88242 0.90849 0.92230 0.92224 0.92080 0.92516 0.92566 0.92276 0.91965 0.92084 0.90633 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.13 2.26 6.06 -4.04 -0.02 2.23 16 3 N -0.99 -19.88 2.82 -115.67 -0.33 -20.21 16 4 C 0.24 5.76 5.43 -5.20 -0.03 5.74 16 5 C -0.54 -13.26 7.35 -34.44 -0.25 -13.51 16 6 H 0.07 1.59 7.03 -52.49 -0.37 1.22 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -24.33 13.29 55.43 0.74 -23.60 16 9 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 S 2.79 54.69 6.08 -107.50 -0.65 54.03 16 14 O -1.00 -20.30 17.11 -57.17 -0.98 -21.28 16 15 O -0.98 -22.37 16.46 -57.17 -0.94 -23.31 16 16 N -1.10 -18.05 6.10 -4.89 -0.03 -18.08 16 17 C 0.11 1.91 4.51 -67.93 -0.31 1.60 16 18 H 0.16 3.23 5.89 -51.93 -0.31 2.92 16 19 C -0.18 -2.77 10.11 -26.69 -0.27 -3.04 16 20 C -0.16 -2.34 5.08 -90.58 -0.46 -2.80 16 21 H 0.10 1.29 8.11 -51.92 -0.42 0.87 16 22 C -0.06 -0.77 2.34 -90.62 -0.21 -0.98 16 23 C -0.11 -1.25 5.19 -26.73 -0.14 -1.39 16 24 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 25 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 26 C -0.12 -1.58 5.92 -26.71 -0.16 -1.74 16 27 C -0.12 -1.71 5.05 -26.71 -0.13 -1.85 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 32 H 0.06 0.95 7.61 -51.93 -0.40 0.56 16 33 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 34 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.40 5.46 8.96 -34.47 -0.31 5.15 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.58 8.05 -51.93 -0.42 1.17 16 39 H 0.07 1.12 7.90 -51.93 -0.41 0.71 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.31 7.29 -51.93 -0.38 0.94 16 49 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -29.06 395.42 -12.11 -41.18 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -8.84 Total: 9.91 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.02 Total: -19.31 kcal Atomic # 7 Polarization: -62.27 SS G_CDS: 0.38 Total: -61.89 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -1.92 Total: -44.59 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 54.69 SS G_CDS: -0.65 Total: 54.03 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.06 -12.11 -41.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337065178.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.692 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds