Wall clock time and date at job start Tue Mar 31 2020 16:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99987 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47046 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46873 * 120.00118 * 8 6 4 11 11 H 1.48497 * 109.47510 * 240.00153 * 8 6 4 12 12 N 1.46506 * 109.46940 * 119.99690 * 2 1 3 13 13 C 1.46499 * 119.99936 * 60.00125 * 12 2 1 14 14 S 1.65597 * 120.00079 * 239.72164 * 12 2 1 15 15 O 1.42095 * 106.40469 * 203.54076 * 14 12 2 16 16 O 1.42098 * 106.40441 * 336.46418 * 14 12 2 17 17 N 1.65602 * 107.21619 * 90.00287 * 14 12 2 18 18 C 1.46938 * 120.78540 * 269.71927 * 17 14 12 19 19 C 1.52722 * 109.18874 * 233.88416 * 18 17 14 20 20 C 1.53100 * 109.49719 * 305.95593 * 19 18 17 21 21 C 1.52882 * 109.41127 * 60.68904 * 20 19 18 22 22 H 1.09000 * 108.61779 * 57.45619 * 21 20 19 23 23 C 1.52748 * 109.64075 * 177.42216 * 21 20 19 24 24 C 1.52975 * 110.27896 * 62.31183 * 23 21 20 25 25 C 1.53042 * 109.25661 * 59.53233 * 24 23 21 26 26 C 1.52927 * 109.33810 * 299.47780 * 25 24 23 27 27 C 1.47199 * 120.78593 * 90.00214 * 17 14 12 28 28 H 1.08999 * 109.96105 * 5.37693 * 27 17 14 29 29 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 31 31 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 32 32 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.47269 * 89.99349 * 13 12 2 34 34 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 35 35 H 1.09005 * 109.47077 * 330.00338 * 13 12 2 36 36 H 1.09000 * 109.56034 * 353.76880 * 18 17 14 37 37 H 1.08998 * 109.55961 * 114.08510 * 18 17 14 38 38 H 1.08999 * 109.55345 * 185.87938 * 19 18 17 39 39 H 1.09010 * 109.33931 * 65.89769 * 19 18 17 40 40 H 1.09006 * 109.47545 * 300.70835 * 20 19 18 41 41 H 1.09005 * 109.49411 * 180.68631 * 20 19 18 42 42 H 1.09003 * 109.41908 * 301.91470 * 23 21 20 43 43 H 1.08998 * 108.87680 * 182.37117 * 23 21 20 44 44 H 1.09000 * 109.50934 * 299.59710 * 24 23 21 45 45 H 1.09001 * 109.50713 * 179.46329 * 24 23 21 46 46 H 1.09002 * 109.49144 * 179.51741 * 25 24 23 47 47 H 1.08997 * 109.51890 * 59.45331 * 25 24 23 48 48 H 1.09003 * 109.43496 * 300.37686 * 26 25 24 49 49 H 1.08999 * 109.39690 * 180.49667 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6036 10 1 1.1660 -1.5868 -4.8160 11 1 3.1466 -0.1875 -4.8165 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4281 14 16 2.9760 0.1122 2.2828 15 8 3.7150 -0.8826 2.9780 16 8 3.5876 1.1774 1.5683 17 7 1.9715 0.8128 3.3975 18 6 1.4559 2.1738 3.1948 19 6 1.7820 3.0221 4.4221 20 6 1.2534 2.3264 5.6793 21 6 1.9274 0.9620 5.8263 22 1 3.0067 1.1093 5.8642 23 6 1.4517 0.2905 7.1132 24 6 -0.0569 0.0431 7.0558 25 6 -0.3756 -0.8573 5.8600 26 6 0.0703 -0.1647 4.5715 27 6 1.5791 0.0894 4.6179 28 1 2.1142 -0.8584 4.6769 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.7095 1.1617 -3.4844 33 1 2.4156 -2.7377 0.9718 34 1 1.6236 -2.2851 2.5003 35 1 0.6903 -2.3002 0.9847 36 1 1.9237 2.6138 2.3141 37 1 0.3754 2.1377 3.0562 38 1 1.3129 4.0011 4.3240 39 1 2.8625 3.1430 4.5006 40 1 0.1751 2.1920 5.5941 41 1 1.4755 2.9378 6.5540 42 1 1.6814 0.9327 7.9634 43 1 1.9708 -0.6611 7.2270 44 1 -0.5777 0.9941 6.9443 45 1 -0.3810 -0.4446 7.9751 46 1 -1.4489 -1.0431 5.8205 47 1 0.1537 -1.8042 5.9659 48 1 -0.4545 0.7853 4.4701 49 1 -0.1642 -0.8014 3.7185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337782249.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:34 Heat of formation + Delta-G solvation = -94.229538 kcal Electronic energy + Delta-G solvation = -29490.860774 eV Core-core repulsion = 25771.646855 eV Total energy + Delta-G solvation = -3719.213920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.08601 -36.72452 -36.12426 -35.49828 -35.16415 -32.89608 -32.54828 -30.44569 -29.50923 -29.05788 -25.56689 -25.13320 -24.93648 -22.83682 -22.32354 -21.59540 -20.61783 -18.57026 -17.97852 -17.36199 -16.80570 -16.30986 -15.96334 -15.51296 -15.02916 -14.54786 -14.43622 -14.09848 -13.94113 -13.45022 -13.32877 -13.22254 -12.94830 -12.89874 -12.76504 -12.38091 -12.06592 -11.98005 -11.72270 -11.64178 -11.53363 -11.34999 -11.27732 -11.21388 -11.14518 -10.96929 -10.90474 -10.78147 -10.61650 -10.44988 -10.30329 -10.25197 -10.17666 -10.02455 -9.91243 -9.23311 -8.70894 -8.44283 -7.92191 -6.06349 -4.12426 1.20441 3.28333 3.36518 3.40691 3.47392 4.09579 4.41312 4.51649 4.61010 4.66601 4.90227 4.97704 5.04356 5.10134 5.19587 5.23951 5.25310 5.31247 5.42413 5.50226 5.56855 5.59134 5.63285 5.68052 5.76363 5.88568 5.93919 5.96518 5.99499 6.01518 6.10428 6.15834 6.16902 6.23936 6.29573 6.37649 6.44807 6.56674 6.64127 6.75091 6.80900 6.91091 7.04405 7.49689 7.65777 7.80611 8.05730 8.29502 8.90127 9.53384 10.99324 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.004110 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.300770 B = 6810.839718 C = 6940.577570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.057 0.943 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.990 5.990 13 C 0.112 3.888 14 S 2.776 3.224 15 O -0.996 6.996 16 O -0.974 6.974 17 N -1.007 6.007 18 C 0.120 3.880 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.093 4.093 22 H 0.072 0.928 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.131 4.131 27 C 0.158 3.842 28 H 0.096 0.904 29 H 0.032 0.968 30 H 0.011 0.989 31 H 0.092 0.908 32 H 0.262 0.738 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 0.674 18.427 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.075 0.925 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.832 5.832 13 C -0.035 4.035 14 S 2.788 3.212 15 O -0.980 6.980 16 O -0.957 6.957 17 N -0.844 5.844 18 C -0.005 4.005 19 C -0.171 4.171 20 C -0.150 4.150 21 C -0.113 4.113 22 H 0.091 0.909 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.170 4.170 27 C 0.052 3.948 28 H 0.114 0.886 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.585 0.844 18.231 18.600 hybrid contribution -0.148 -0.462 -0.972 1.086 sum -3.733 0.382 17.259 17.663 Atomic orbital electron populations 1.22098 0.98288 0.99639 1.00532 1.18707 0.91258 0.92901 0.80556 0.92514 1.21383 1.31398 1.12925 0.90083 0.91985 1.24899 0.94985 0.95016 0.98973 1.69867 1.36707 1.22746 1.23612 0.86458 0.78604 0.79704 0.82751 1.19745 1.21009 1.20901 1.57755 1.69854 1.19777 1.35860 1.21114 1.01599 0.82200 0.98587 1.02028 0.73849 0.73056 0.72314 1.93514 1.69386 1.60417 1.74683 1.93581 1.73904 1.56141 1.72118 1.58565 1.67749 1.24078 1.33974 1.21247 0.99536 0.81083 0.98667 1.21807 1.01723 0.98517 0.95017 1.21595 1.00572 0.95381 0.97453 1.21327 1.00495 0.95392 0.94118 0.90936 1.21471 0.96044 1.00700 0.96784 1.21565 0.96139 1.00027 0.98003 1.21506 1.00889 0.98768 0.94384 1.21937 0.95690 1.01529 0.97880 1.20970 0.95288 0.94961 0.83596 0.88593 0.94866 0.97042 0.88975 0.92806 0.93426 0.93513 0.91044 0.88891 0.91631 0.90979 0.91694 0.91322 0.92164 0.91878 0.91833 0.91742 0.92201 0.91880 0.91860 0.91068 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.95 37.16 0.33 -2.94 16 2 C 0.27 6.55 2.62 -69.08 -0.18 6.37 16 3 H 0.06 1.53 6.92 -51.93 -0.36 1.17 16 4 C -0.52 -14.03 8.37 -34.44 -0.29 -14.32 16 5 H 0.06 1.69 7.65 -52.48 -0.40 1.29 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.69 11.32 55.43 0.63 -24.07 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.99 -20.76 3.12 -115.85 -0.36 -21.12 16 13 C 0.11 2.02 9.53 59.85 0.57 2.59 16 14 S 2.78 56.02 6.11 -107.50 -0.66 55.36 16 15 O -1.00 -21.11 15.84 -57.17 -0.91 -22.02 16 16 O -0.97 -23.05 15.30 -57.17 -0.87 -23.93 16 17 N -1.01 -15.67 3.04 -106.56 -0.32 -15.99 16 18 C 0.12 1.70 5.98 -3.95 -0.02 1.68 16 19 C -0.13 -1.50 6.06 -26.82 -0.16 -1.66 16 20 C -0.11 -1.12 4.61 -26.74 -0.12 -1.24 16 21 C -0.09 -1.03 2.51 -90.77 -0.23 -1.25 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 C -0.11 -0.99 5.38 -26.87 -0.14 -1.14 16 24 C -0.12 -0.98 5.68 -26.72 -0.15 -1.13 16 25 C -0.12 -1.07 5.92 -26.75 -0.16 -1.23 16 26 C -0.13 -1.48 4.95 -26.73 -0.13 -1.61 16 27 C 0.16 2.05 2.64 -67.47 -0.18 1.88 16 28 H 0.10 1.34 6.98 -51.93 -0.36 0.98 16 29 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 35 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 36 H 0.09 1.50 6.93 -51.93 -0.36 1.14 16 37 H 0.07 0.85 7.30 -51.93 -0.38 0.47 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 40 H 0.07 0.65 5.09 -51.93 -0.26 0.39 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.52 6.66 -51.93 -0.35 0.17 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.79 5.51 -51.93 -0.29 0.50 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -31.02 370.08 -11.27 -42.29 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.37 Total: 0.06 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.96 Total: -12.38 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.06 Total: -61.18 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.78 Total: -45.94 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 56.02 SS G_CDS: -0.66 Total: 55.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.02 -11.27 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337782249.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.944 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds