Wall clock time and date at job start Tue Mar 31 2020 16:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47050 * 2 1 4 4 C 1.50696 * 109.47003 * 240.00262 * 2 1 3 5 5 H 1.08004 * 120.00070 * 274.97016 * 4 2 1 6 6 C 1.37878 * 120.00433 * 94.96952 * 4 2 1 7 7 N 1.31514 * 120.00364 * 184.89465 * 6 4 2 8 8 Si 1.86803 * 119.99774 * 4.89041 * 6 4 2 9 9 H 1.48497 * 109.46889 * 84.82930 * 8 6 4 10 10 H 1.48498 * 109.47296 * 204.83116 * 8 6 4 11 11 H 1.48497 * 109.47225 * 324.83597 * 8 6 4 12 12 N 1.46500 * 109.47367 * 120.00400 * 2 1 3 13 13 C 1.46498 * 120.00154 * 59.99511 * 12 2 1 14 14 S 1.65603 * 119.99708 * 240.00077 * 12 2 1 15 15 O 1.42101 * 106.40443 * 23.53862 * 14 12 2 16 16 O 1.42108 * 106.39990 * 156.45587 * 14 12 2 17 17 N 1.65602 * 107.21499 * 269.99510 * 14 12 2 18 18 C 1.48208 * 126.43963 * 90.03134 * 17 14 12 19 19 C 1.55340 * 107.03231 * 185.06702 * 18 17 14 20 20 H 1.08997 * 110.97184 * 140.58229 * 19 18 17 21 21 C 1.53006 * 110.96354 * 264.30135 * 19 18 17 22 22 C 1.53669 * 101.78152 * 22.45676 * 19 18 17 23 23 H 1.08996 * 111.11476 * 79.29062 * 22 19 18 24 24 C 1.51928 * 115.22449 * 206.67163 * 22 19 18 25 25 C 1.53702 * 107.28957 * 174.83122 * 24 22 19 26 26 C 1.52574 * 111.49447 * 301.86436 * 25 24 22 27 27 C 1.53782 * 111.36867 * 54.85489 * 26 25 24 28 28 C 1.45389 * 126.44098 * 269.71314 * 17 14 12 29 29 H 1.08999 * 109.20664 * 265.86912 * 28 17 14 30 30 H 1.09008 * 109.46673 * 294.97546 * 1 2 3 31 31 H 1.09003 * 109.46883 * 54.96949 * 1 2 3 32 32 H 1.08996 * 109.47127 * 174.97738 * 1 2 3 33 33 H 0.96998 * 119.99954 * 179.97438 * 7 6 4 34 34 H 1.09006 * 109.47414 * 270.00399 * 13 12 2 35 35 H 1.08998 * 109.47252 * 150.00436 * 13 12 2 36 36 H 1.09000 * 109.46855 * 30.00115 * 13 12 2 37 37 H 1.09003 * 109.92082 * 304.40547 * 18 17 14 38 38 H 1.09003 * 109.92767 * 65.71791 * 18 17 14 39 39 H 1.09002 * 109.47068 * 58.54499 * 21 19 18 40 40 H 1.08997 * 109.47179 * 178.54711 * 21 19 18 41 41 H 1.08999 * 109.46888 * 298.54680 * 21 19 18 42 42 H 1.09006 * 109.89138 * 294.27445 * 24 22 19 43 43 H 1.09002 * 109.89367 * 55.30605 * 24 22 19 44 44 H 1.09003 * 109.07473 * 62.38430 * 25 24 22 45 45 H 1.09002 * 109.07047 * 181.41548 * 25 24 22 46 46 H 1.09001 * 109.09908 * 175.33823 * 26 25 24 47 47 H 1.08998 * 109.10083 * 294.42645 * 26 25 24 48 48 H 1.08992 * 109.88028 * 62.18583 * 27 26 25 49 49 H 1.09001 * 109.87541 * 183.18559 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1359 -1.7854 -1.2289 6 6 2.3596 0.0121 -2.3583 7 7 2.7057 -0.6132 -3.4623 8 14 2.3115 1.8791 -2.3182 9 1 3.5966 2.3959 -1.7830 10 1 2.1033 2.3986 -3.6937 11 1 1.1963 2.3268 -1.4458 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 2.6904 1.4972 2.1193 16 8 2.8228 -0.5647 3.5259 17 7 4.5438 -0.1043 1.8179 18 6 5.3172 0.7635 0.8984 19 6 6.6915 0.0757 0.6718 20 1 7.0092 0.1716 -0.3664 21 6 7.7502 0.6423 1.6200 22 6 6.3707 -1.3873 1.0158 23 1 5.8669 -1.8841 0.1868 24 6 7.5489 -2.2097 1.5094 25 6 7.0044 -3.5871 1.9202 26 6 5.9300 -3.4652 2.9966 27 6 4.7981 -2.5228 2.5544 28 6 5.4280 -1.1798 2.2364 29 1 6.0158 -0.8482 3.0923 30 1 -0.3633 0.4340 0.9317 31 1 -0.3633 0.5899 -0.8415 32 1 -0.3633 -1.0237 -0.0900 33 1 2.9356 -0.1049 -4.2558 34 1 0.7376 -2.1445 1.9993 35 1 2.4629 -2.5820 1.9863 36 1 1.5295 -2.5968 0.4707 37 1 4.7902 0.8618 -0.0507 38 1 5.4630 1.7453 1.3489 39 1 7.4288 0.4978 2.6515 40 1 8.6964 0.1259 1.4585 41 1 7.8795 1.7070 1.4256 42 1 8.2821 -2.3238 0.7108 43 1 8.0091 -1.7204 2.3679 44 1 6.5778 -4.0770 1.0449 45 1 7.8244 -4.1942 2.3038 46 1 5.5139 -4.4522 3.1986 47 1 6.3817 -3.0753 3.9088 48 1 4.3060 -2.9246 1.6689 49 1 4.0741 -2.4091 3.3612 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337785639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:49 Heat of formation + Delta-G solvation = -86.226516 kcal Electronic energy + Delta-G solvation = -29987.478916 eV Core-core repulsion = 26268.612034 eV Total energy + Delta-G solvation = -3718.866883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.14135 -36.79607 -36.29768 -35.41425 -35.28253 -32.98011 -32.50049 -29.95952 -29.39198 -28.76650 -26.10805 -25.66506 -25.18673 -22.68422 -22.10624 -20.78276 -20.41397 -19.19082 -18.19405 -17.53619 -16.81149 -16.50785 -15.70803 -15.25900 -14.73739 -14.64447 -14.45277 -14.20008 -13.88228 -13.61526 -13.23774 -13.16167 -12.72335 -12.60075 -12.53896 -12.46042 -12.22140 -12.08572 -11.93706 -11.76937 -11.69118 -11.49657 -11.43732 -11.27674 -11.19677 -11.01335 -10.80793 -10.74254 -10.63624 -10.54792 -10.35833 -10.24715 -10.22795 -9.84506 -9.67425 -9.40004 -8.72541 -8.54388 -8.02948 -6.23412 -4.23371 1.16926 3.19454 3.29397 3.37288 3.42704 4.05256 4.28925 4.50301 4.56942 4.77060 4.90942 5.03976 5.08976 5.13326 5.18928 5.33829 5.37924 5.50905 5.55161 5.57268 5.62521 5.65708 5.77375 5.84785 5.93779 6.03626 6.03987 6.08402 6.10987 6.14490 6.15639 6.20660 6.23315 6.28542 6.35590 6.41204 6.44688 6.47928 6.53443 6.62765 6.66209 6.69664 6.82430 7.00492 7.20306 7.45538 7.67633 8.38442 8.81671 9.38430 10.88356 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.006305 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.901895 B = 4439.798465 C = 5018.924526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.233 3.767 3 H 0.054 0.946 4 C -0.516 4.516 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.888 5.888 8 Si 0.855 3.145 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.260 1.260 12 N -0.984 5.984 13 C 0.100 3.900 14 S 2.787 3.213 15 O -0.985 6.985 16 O -0.990 6.990 17 N -1.007 6.007 18 C 0.128 3.872 19 C -0.096 4.096 20 H 0.087 0.913 21 C -0.143 4.143 22 C -0.097 4.097 23 H 0.094 0.906 24 C -0.107 4.107 25 C -0.121 4.121 26 C -0.108 4.108 27 C -0.150 4.150 28 C 0.155 3.845 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.266 0.734 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 -3.394 9.511 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.129 3.871 3 H 0.072 0.928 4 C -0.555 4.555 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.681 3.319 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.826 5.826 13 C -0.046 4.046 14 S 2.799 3.201 15 O -0.970 6.970 16 O -0.975 6.975 17 N -0.844 5.844 18 C 0.003 3.997 19 C -0.115 4.115 20 H 0.105 0.895 21 C -0.200 4.200 22 C -0.117 4.117 23 H 0.112 0.888 24 C -0.145 4.145 25 C -0.159 4.159 26 C -0.146 4.146 27 C -0.188 4.188 28 C 0.048 3.952 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.097 0.903 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.834 -2.831 10.137 13.741 hybrid contribution 0.053 0.802 -0.627 1.019 sum 8.888 -2.029 9.511 13.174 Atomic orbital electron populations 1.22164 0.97969 1.01093 0.99079 1.19093 0.91780 0.92858 0.83336 0.92780 1.21172 1.43783 0.95983 0.94602 0.89965 1.24939 0.94205 0.97903 0.95339 1.69879 1.45152 1.35841 1.01613 0.87209 0.80161 0.86815 0.77714 1.19416 1.20998 1.18396 1.57959 1.64254 1.21401 1.38976 1.21344 0.99213 0.82077 1.02004 1.01723 0.71764 0.73308 0.73309 1.93548 1.83787 1.32610 1.87011 1.93517 1.85797 1.76079 1.42073 1.58842 1.28674 1.36045 1.60872 1.22169 0.91455 0.92589 0.93532 1.22013 0.94143 0.95050 1.00317 0.89482 1.21839 0.98137 1.00518 0.99498 1.22345 0.96522 0.94815 0.98039 0.88795 1.21462 0.97038 0.95253 1.00723 1.21576 0.98041 0.97112 0.99121 1.21424 0.95535 0.99234 0.98397 1.22100 0.99119 0.94442 1.03183 1.21052 0.90590 0.86829 0.96741 0.91710 0.95416 0.92737 0.92850 0.92395 0.94002 0.92424 0.90188 0.90512 0.91741 0.92484 0.92356 0.92658 0.91686 0.91554 0.91814 0.92240 0.91677 0.92162 0.90336 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.10 37.16 0.34 -2.69 16 2 C 0.23 5.39 2.28 -69.08 -0.16 5.23 16 3 H 0.05 1.34 4.07 -51.93 -0.21 1.13 16 4 C -0.52 -13.21 8.72 -34.44 -0.30 -13.51 16 5 H 0.08 2.24 6.82 -52.48 -0.36 1.89 16 6 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 7 N -0.89 -25.09 13.96 55.43 0.77 -24.31 16 8 Si 0.85 20.57 26.99 -169.99 -4.59 15.98 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -6.18 6.82 56.52 0.39 -5.79 16 12 N -0.98 -20.27 3.12 -115.85 -0.36 -20.63 16 13 C 0.10 1.76 9.44 59.85 0.56 2.32 16 14 S 2.79 56.87 6.02 -107.50 -0.65 56.22 16 15 O -0.99 -22.89 16.34 -57.17 -0.93 -23.82 16 16 O -0.99 -20.32 14.92 -57.17 -0.85 -21.18 16 17 N -1.01 -17.79 3.71 -104.64 -0.39 -18.18 16 18 C 0.13 2.15 6.69 -1.86 -0.01 2.14 16 19 C -0.10 -1.28 3.57 -89.03 -0.32 -1.60 16 20 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 21 C -0.14 -1.56 7.96 37.16 0.30 -1.26 16 22 C -0.10 -1.30 2.51 -89.43 -0.22 -1.52 16 23 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 24 C -0.11 -1.12 4.77 -26.91 -0.13 -1.25 16 25 C -0.12 -1.22 5.84 -26.58 -0.16 -1.38 16 26 C -0.11 -1.17 5.84 -26.54 -0.15 -1.33 16 27 C -0.15 -2.08 4.15 -26.98 -0.11 -2.20 16 28 C 0.15 2.28 2.25 -67.79 -0.15 2.13 16 29 H 0.07 0.90 6.65 -51.93 -0.35 0.56 16 30 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 1.06 7.84 -51.93 -0.41 0.65 16 33 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.91 4.64 -51.93 -0.24 0.67 16 36 H 0.08 1.45 6.56 -51.93 -0.34 1.11 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 39 H 0.06 0.63 6.69 -51.93 -0.35 0.29 16 40 H 0.06 0.54 7.41 -51.93 -0.38 0.16 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.65 6.80 -51.93 -0.35 0.29 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.08 1.14 6.97 -51.93 -0.36 0.77 16 49 H 0.09 1.33 5.94 -51.93 -0.31 1.03 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -29.96 368.95 -10.34 -40.30 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -8.29 Total: 2.91 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -0.62 Total: -12.85 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.02 Total: -63.12 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -1.79 Total: -45.00 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.59 Total: 15.98 kcal Atomic # 16 Polarization: 56.87 SS G_CDS: -0.65 Total: 56.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.96 -10.34 -40.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337785639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.922 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds