Wall clock time and date at job start Tue Mar 31 2020 16:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47263 * 2 1 4 4 C 1.50699 * 109.47118 * 239.99609 * 2 1 3 5 5 H 1.07997 * 120.00428 * 274.20159 * 4 2 1 6 6 C 1.37879 * 119.99655 * 94.20098 * 4 2 1 7 7 N 1.31513 * 120.00001 * 183.50601 * 6 4 2 8 8 Si 1.86795 * 120.00125 * 3.51426 * 6 4 2 9 9 H 1.48498 * 109.47696 * 93.20916 * 8 6 4 10 10 H 1.48506 * 109.47133 * 213.20826 * 8 6 4 11 11 H 1.48500 * 109.47101 * 333.20658 * 8 6 4 12 12 N 1.46500 * 109.46939 * 120.00109 * 2 1 3 13 13 C 1.46501 * 120.00070 * 59.99910 * 12 2 1 14 14 S 1.65597 * 119.99912 * 239.99936 * 12 2 1 15 15 O 1.42103 * 106.40313 * 336.45561 * 14 12 2 16 16 O 1.42100 * 106.40311 * 203.53878 * 14 12 2 17 17 N 1.65594 * 107.22109 * 90.00048 * 14 12 2 18 18 C 1.46507 * 120.00166 * 89.99777 * 17 14 12 19 19 C 1.52995 * 109.46713 * 92.67525 * 18 17 14 20 20 C 1.53004 * 117.49631 * 243.01616 * 19 18 17 21 21 C 1.53005 * 117.49618 * 174.36444 * 19 18 17 22 22 C 1.46502 * 120.00127 * 270.00513 * 17 14 12 23 23 C 1.53004 * 109.46908 * 262.75455 * 22 17 14 24 24 C 1.53777 * 113.61707 * 270.82706 * 23 22 17 25 25 C 1.53956 * 87.02103 * 220.04788 * 24 23 22 26 26 C 1.53780 * 87.10986 * 25.36111 * 25 24 23 27 27 H 1.08996 * 109.47050 * 294.87435 * 1 2 3 28 28 H 1.09007 * 109.46878 * 54.87259 * 1 2 3 29 29 H 1.09000 * 109.47176 * 174.86993 * 1 2 3 30 30 H 0.97005 * 120.00510 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47250 * 270.00178 * 13 12 2 32 32 H 1.09001 * 109.47287 * 30.00007 * 13 12 2 33 33 H 1.09005 * 109.47428 * 150.00040 * 13 12 2 34 34 H 1.09003 * 109.46912 * 212.67224 * 18 17 14 35 35 H 1.08996 * 109.46641 * 332.67071 * 18 17 14 36 36 H 1.08994 * 115.55528 * 28.69106 * 19 18 17 37 37 H 1.09009 * 117.49707 * 0.02562 * 20 19 18 38 38 H 1.08995 * 117.49810 * 145.02004 * 20 19 18 39 39 H 1.08994 * 117.49786 * 214.98024 * 21 19 18 40 40 H 1.09001 * 117.49712 * 359.97438 * 21 19 18 41 41 H 1.09002 * 109.46874 * 22.74657 * 22 17 14 42 42 H 1.08993 * 109.47925 * 142.75704 * 22 17 14 43 43 H 1.09005 * 112.84937 * 42.02105 * 23 22 17 44 44 H 1.09005 * 113.61086 * 334.56706 * 24 23 22 45 45 H 1.09001 * 113.61488 * 105.46388 * 24 23 22 46 46 H 1.08998 * 113.53168 * 270.81080 * 25 24 23 47 47 H 1.09001 * 113.66434 * 139.93498 * 25 24 23 48 48 H 1.09006 * 113.61412 * 220.09249 * 26 25 24 49 49 H 1.09000 * 113.69259 * 89.20372 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1477 -1.7843 -1.2247 6 6 2.3446 0.0104 -2.3635 7 7 2.7169 -0.6149 -3.4589 8 14 2.2389 1.8753 -2.3427 9 1 3.5676 2.4426 -1.9994 10 1 1.8239 2.3626 -3.6827 11 1 1.2412 2.3033 -1.3295 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9703 0.1141 2.2862 15 8 3.5795 1.1828 1.5748 16 8 3.7117 -0.8790 2.9815 17 7 1.9607 0.8090 3.3998 18 6 1.5812 0.0697 4.6064 19 6 2.5514 0.4103 5.7393 20 6 3.4066 -0.7264 6.3027 21 6 2.2468 -0.1606 7.1258 22 6 1.4468 2.1629 3.1783 23 6 2.3084 3.1674 3.9463 24 6 1.8256 3.4207 5.3841 25 6 2.1622 4.9047 5.1501 26 6 1.9556 4.6346 3.6504 27 1 -0.3633 0.4323 0.9323 28 1 -0.3633 0.5914 -0.8406 29 1 -0.3633 -1.0235 -0.0919 30 1 2.9370 -0.1078 -4.2560 31 1 0.7375 -2.1444 1.9993 32 1 1.5294 -2.5969 0.4708 33 1 2.4628 -2.5820 1.9864 34 1 0.5687 0.3475 4.8993 35 1 1.6202 -1.0006 4.4040 36 1 3.0010 1.4021 5.6911 37 1 3.2783 -1.7169 5.8658 38 1 4.4187 -0.4824 6.6253 39 1 2.4963 0.4555 7.9896 40 1 1.3550 -0.7785 7.2308 41 1 1.4804 2.3947 2.1138 42 1 0.4173 2.2231 3.5311 43 1 3.3746 2.9518 3.8753 44 1 0.7616 3.2316 5.5271 45 1 2.4467 2.9455 6.1434 46 1 3.1885 5.1643 5.4097 47 1 1.4303 5.5916 5.5750 48 1 2.6817 5.1381 3.0120 49 1 0.9278 4.7779 3.3170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337815212.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:34 Heat of formation + Delta-G solvation = -26.285494 kcal Electronic energy + Delta-G solvation = -29049.576515 eV Core-core repulsion = 25333.308871 eV Total energy + Delta-G solvation = -3716.267645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.31504 -37.60007 -36.64443 -36.27273 -35.19425 -34.87059 -32.44843 -29.94760 -28.85289 -26.09786 -25.68773 -25.56750 -25.12059 -22.66333 -22.28466 -20.74632 -20.58428 -19.45688 -18.45373 -17.43406 -17.32282 -16.37818 -16.23942 -15.66158 -15.29351 -15.01789 -14.55222 -14.16995 -14.08175 -13.52799 -13.50284 -13.02505 -12.74035 -12.67830 -12.57079 -12.49252 -12.37291 -11.95641 -11.90820 -11.79781 -11.59895 -11.48989 -11.33846 -11.28940 -11.23406 -11.11924 -10.81100 -10.76726 -10.69059 -10.37903 -10.32124 -10.28193 -10.20125 -9.87105 -9.76944 -9.34968 -8.88958 -8.59663 -8.03282 -6.16731 -4.17250 1.12984 3.26895 3.34776 3.38529 3.43054 3.81698 4.05884 4.37115 4.53247 4.58209 4.66665 4.72651 4.79562 4.84452 4.92928 5.03451 5.13764 5.18280 5.29599 5.42634 5.50712 5.57885 5.63631 5.65740 5.66948 5.70860 5.72415 5.82118 5.89778 5.95071 5.95900 6.02444 6.08447 6.12570 6.16565 6.19474 6.33104 6.34959 6.42130 6.44555 6.56504 6.64215 6.77235 6.97175 7.19435 7.51247 7.67208 8.43631 8.87479 9.44734 10.95289 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.005230 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.797914 B = 5352.570868 C = 6621.538899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.233 3.767 3 H 0.057 0.943 4 C -0.517 4.517 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.889 5.889 8 Si 0.868 3.132 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.985 5.985 13 C 0.095 3.905 14 S 2.767 3.233 15 O -0.975 6.975 16 O -0.985 6.985 17 N -1.006 6.006 18 C 0.163 3.837 19 C -0.179 4.179 20 C -0.169 4.169 21 C -0.181 4.181 22 C 0.135 3.865 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.136 4.136 27 H 0.025 0.975 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 5.658 19.487 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 H 0.075 0.925 4 C -0.557 4.557 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.526 5.526 8 Si 0.694 3.306 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.186 1.186 12 N -0.827 5.827 13 C -0.051 4.051 14 S 2.778 3.222 15 O -0.959 6.959 16 O -0.969 6.969 17 N -0.842 5.842 18 C 0.037 3.963 19 C -0.198 4.198 20 C -0.206 4.206 21 C -0.218 4.218 22 C 0.009 3.991 23 C -0.147 4.147 24 C -0.172 4.172 25 C -0.181 4.181 26 C -0.174 4.174 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.556 5.725 19.288 20.629 hybrid contribution -0.358 0.938 -0.157 1.017 sum -4.915 6.663 19.131 20.846 Atomic orbital electron populations 1.22243 0.98363 1.01215 0.98750 1.19146 0.91147 0.93294 0.83507 0.92540 1.21140 1.44253 0.96072 0.94231 0.90027 1.24985 0.93862 0.98430 0.95346 1.69888 1.44741 1.36034 1.01971 0.86987 0.79882 0.86385 0.77321 1.19336 1.21151 1.18598 1.57962 1.70039 1.19865 1.34791 1.21319 0.98708 0.82322 1.02745 1.02519 0.74054 0.73232 0.72412 1.93583 1.73841 1.56058 1.72372 1.93526 1.68954 1.60099 1.74288 1.58272 1.67981 1.24062 1.33883 1.20691 0.97136 0.95431 0.83091 1.23090 1.02915 0.99555 0.94261 1.23005 0.95598 0.98770 1.03240 1.22932 1.00487 1.04289 0.94133 1.21270 0.97076 0.80074 1.00633 1.23020 1.00860 0.94773 0.96012 1.23136 1.01278 0.95942 0.96834 1.22841 1.01484 0.96936 0.96810 1.22894 1.02035 0.95931 0.96542 0.95598 0.92855 0.92860 0.92362 0.94572 0.89767 0.91700 0.90482 0.90461 0.86704 0.88268 0.89219 0.89171 0.88933 0.89906 0.90632 0.88951 0.90119 0.91301 0.90479 0.91715 0.91253 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.09 37.16 0.34 -2.52 16 2 C 0.23 5.33 2.21 -69.08 -0.15 5.18 16 3 H 0.06 1.37 3.99 -51.93 -0.21 1.16 16 4 C -0.52 -14.08 8.72 -34.44 -0.30 -14.38 16 5 H 0.08 2.37 6.82 -52.49 -0.36 2.01 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 8 Si 0.87 21.60 27.05 -169.99 -4.60 17.00 16 9 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.26 -6.00 6.50 56.52 0.37 -5.64 16 12 N -0.98 -20.00 3.12 -115.85 -0.36 -20.36 16 13 C 0.10 1.66 9.81 59.85 0.59 2.25 16 14 S 2.77 54.21 6.01 -107.50 -0.65 53.56 16 15 O -0.97 -22.54 15.63 -57.17 -0.89 -23.43 16 16 O -0.98 -20.15 15.76 -57.17 -0.90 -21.05 16 17 N -1.01 -14.70 2.87 -114.38 -0.33 -15.03 16 18 C 0.16 1.94 5.61 -4.04 -0.02 1.92 16 19 C -0.18 -2.04 5.25 -90.62 -0.48 -2.51 16 20 C -0.17 -1.96 10.18 -26.70 -0.27 -2.23 16 21 C -0.18 -1.67 10.25 -26.69 -0.27 -1.94 16 22 C 0.14 1.79 5.25 -4.04 -0.02 1.77 16 23 C -0.13 -1.54 3.11 -89.81 -0.28 -1.82 16 24 C -0.13 -1.28 6.50 -25.83 -0.17 -1.45 16 25 C -0.14 -1.31 8.09 -25.83 -0.21 -1.52 16 26 C -0.14 -1.45 7.65 -25.92 -0.20 -1.65 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.06 7.97 -51.92 -0.41 0.64 16 29 H 0.05 1.00 7.84 -51.93 -0.41 0.60 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.57 6.56 -51.93 -0.34 1.23 16 33 H 0.06 1.09 7.02 -51.93 -0.36 0.72 16 34 H 0.08 0.74 8.00 -51.93 -0.42 0.33 16 35 H 0.08 0.94 7.42 -51.93 -0.39 0.56 16 36 H 0.12 1.34 4.50 -51.93 -0.23 1.11 16 37 H 0.10 1.22 8.03 -51.92 -0.42 0.80 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.26 7.53 -51.93 -0.39 0.86 16 42 H 0.08 0.80 7.69 -51.93 -0.40 0.41 16 43 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 45 H 0.07 0.65 6.15 -51.93 -0.32 0.33 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 389.39 15.07 5.87 5.87 Total: -1.00 -32.12 389.39 -11.09 -43.20 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.46 Total: 2.88 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.54 Total: -16.78 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.08 Total: -61.25 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -1.79 Total: -44.48 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.60 Total: 17.00 kcal Atomic # 16 Polarization: 54.21 SS G_CDS: -0.65 Total: 53.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.12 -11.09 -43.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337815212.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.919 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds