Wall clock time and date at job start Tue Mar 31 2020 16:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47252 * 2 1 4 4 C 1.50703 * 109.47244 * 119.99657 * 2 1 3 5 5 H 1.07998 * 120.00041 * 119.99946 * 4 2 1 6 6 C 1.37879 * 120.00064 * 300.00147 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 119.99991 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47449 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47332 * 119.99822 * 8 6 4 11 11 H 1.48498 * 109.47400 * 239.99596 * 8 6 4 12 12 N 1.46501 * 109.47121 * 239.99433 * 2 1 3 13 13 C 1.46495 * 120.00168 * 306.58851 * 12 2 1 14 14 S 1.65601 * 119.99647 * 126.58452 * 12 2 1 15 15 O 1.42102 * 106.40093 * 155.26642 * 14 12 2 16 16 O 1.42097 * 106.40440 * 22.34409 * 14 12 2 17 17 N 1.65608 * 107.21891 * 268.80339 * 14 12 2 18 18 C 1.46495 * 119.99800 * 97.63981 * 17 14 12 19 19 C 1.53003 * 109.47333 * 265.00188 * 18 17 14 20 20 C 1.53003 * 117.49592 * 243.74927 * 19 18 17 21 21 C 1.53003 * 117.50088 * 175.09056 * 19 18 17 22 22 C 1.46500 * 120.00030 * 277.63988 * 17 14 12 23 23 C 1.52999 * 109.47079 * 245.07314 * 22 17 14 24 24 C 1.53784 * 113.61193 * 183.73136 * 23 22 17 25 25 C 1.53774 * 87.16965 * 220.06069 * 24 23 22 26 26 C 1.53780 * 87.08722 * 25.39161 * 25 24 23 27 27 H 1.09001 * 109.46815 * 306.82291 * 1 2 3 28 28 H 1.08997 * 109.46749 * 66.82588 * 1 2 3 29 29 H 1.08992 * 109.46772 * 186.82621 * 1 2 3 30 30 H 0.96997 * 120.00331 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46930 * 269.99570 * 13 12 2 32 32 H 1.08997 * 109.47339 * 29.99945 * 13 12 2 33 33 H 1.09004 * 109.47325 * 149.99673 * 13 12 2 34 34 H 1.09001 * 109.47733 * 25.00247 * 18 17 14 35 35 H 1.09007 * 109.47417 * 144.99923 * 18 17 14 36 36 H 1.08997 * 115.54933 * 29.41783 * 19 18 17 37 37 H 1.08993 * 117.50095 * 359.97438 * 20 19 18 38 38 H 1.08998 * 117.49380 * 145.02270 * 20 19 18 39 39 H 1.08998 * 117.49325 * 214.97901 * 21 19 18 40 40 H 1.09004 * 117.49283 * 359.97438 * 21 19 18 41 41 H 1.09001 * 109.46985 * 125.06699 * 22 17 14 42 42 H 1.09002 * 109.46790 * 5.07548 * 22 17 14 43 43 H 1.09004 * 112.90781 * 314.97939 * 23 22 17 44 44 H 1.09004 * 113.61261 * 105.46836 * 24 23 22 45 45 H 1.08997 * 113.61412 * 334.65083 * 24 23 22 46 46 H 1.09004 * 113.61526 * 139.94172 * 25 24 23 47 47 H 1.08999 * 113.61493 * 270.83993 * 25 24 23 48 48 H 1.08997 * 113.61339 * 89.11008 * 26 25 24 49 49 H 1.08996 * 113.61433 * 219.93521 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1201 4.0080 9 1 3.1466 -2.2868 3.6039 10 1 3.1467 -0.1871 4.8165 11 1 1.1662 -1.5864 4.8162 12 7 2.0184 -0.6907 -1.1961 13 6 1.5496 -2.0443 -1.5030 14 16 3.1002 0.0587 -2.2012 15 8 3.8038 -0.9753 -2.8760 16 8 3.7450 1.0579 -1.4234 17 7 2.2235 0.8585 -3.3563 18 6 1.9491 2.2898 -3.2071 19 6 0.5780 2.4811 -2.5556 20 6 -0.5047 3.1798 -3.3804 21 6 0.1545 3.9095 -2.2073 22 6 1.7223 0.1347 -4.5273 23 6 2.3998 0.6740 -5.7886 24 6 1.8752 0.0409 -7.0882 25 6 3.3319 0.0287 -7.5805 26 6 3.7493 0.0018 -6.1007 27 1 -0.3633 0.6159 0.8227 28 1 -0.3633 0.4044 -0.9447 29 1 -0.3632 -1.0203 0.1221 30 1 0.7095 1.1620 3.4843 31 1 2.2113 -2.7729 -1.0347 32 1 0.5374 -2.1738 -1.1200 33 1 1.5513 -2.1933 -2.5828 34 1 2.7161 2.7434 -2.5793 35 1 1.9548 2.7651 -4.1881 36 1 0.2621 1.6842 -1.8824 37 1 -0.2402 3.5036 -4.3870 38 1 -1.5330 2.8429 -3.2495 39 1 -0.4404 4.0521 -1.3051 40 1 0.8529 4.7128 -2.4419 41 1 0.6440 0.2737 -4.6062 42 1 1.9449 -0.9270 -4.4208 43 1 2.4373 1.7630 -5.8176 44 1 1.2252 0.7002 -7.6637 45 1 1.4528 -0.9543 -6.9496 46 1 3.6008 -0.8756 -8.1265 47 1 3.6248 0.9409 -8.1003 48 1 3.8397 -1.0040 -5.6907 49 1 4.6133 0.6284 -5.8792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337815213.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:40 Heat of formation + Delta-G solvation = -29.639224 kcal Electronic energy + Delta-G solvation = -28984.076559 eV Core-core repulsion = 25267.663485 eV Total energy + Delta-G solvation = -3716.413073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.14787 -37.59935 -36.57883 -36.14004 -35.16411 -34.71546 -32.55152 -29.13287 -28.70865 -26.00073 -25.70383 -25.49742 -25.04873 -22.56700 -22.18120 -20.99772 -20.27239 -19.24584 -18.32911 -17.29975 -16.83212 -16.46121 -16.15236 -15.44846 -15.19613 -14.87978 -14.68726 -14.23070 -13.90616 -13.58645 -13.35302 -13.17291 -12.84214 -12.58779 -12.42652 -12.04306 -12.00799 -11.90317 -11.79371 -11.66425 -11.39863 -11.29511 -11.23051 -11.18285 -11.03953 -10.98390 -10.76779 -10.71142 -10.50091 -10.34103 -10.23941 -10.20218 -10.07409 -9.94677 -9.71265 -9.26624 -8.73702 -8.43774 -7.92980 -6.05568 -4.11044 1.21446 3.28946 3.37181 3.41258 3.45989 4.01048 4.09760 4.42461 4.56430 4.62921 4.67176 4.82794 4.85909 4.98175 5.07265 5.18711 5.25371 5.27622 5.37261 5.47908 5.56968 5.61246 5.68160 5.75927 5.76332 5.78560 5.81899 5.84697 5.93957 6.06181 6.08869 6.13378 6.13787 6.27843 6.31523 6.40388 6.41858 6.52052 6.63643 6.73764 6.80956 6.95630 7.03038 7.47942 7.65668 7.81395 8.03845 8.29080 8.91101 9.54621 11.00361 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.004563 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.256314 B = 6134.192146 C = 7156.591185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.271 3.729 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.991 5.991 13 C 0.109 3.891 14 S 2.775 3.225 15 O -0.992 6.992 16 O -0.971 6.971 17 N -1.004 6.004 18 C 0.150 3.850 19 C -0.179 4.179 20 C -0.181 4.181 21 C -0.173 4.173 22 C 0.135 3.865 23 C -0.125 4.125 24 C -0.132 4.132 25 C -0.144 4.144 26 C -0.138 4.138 27 H 0.088 0.912 28 H 0.014 0.986 29 H 0.035 0.965 30 H 0.262 0.738 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 1.757 -17.287 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.168 3.832 3 H 0.075 0.925 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.834 5.834 13 C -0.038 4.038 14 S 2.785 3.215 15 O -0.976 6.976 16 O -0.955 6.955 17 N -0.840 5.840 18 C 0.025 3.975 19 C -0.198 4.198 20 C -0.218 4.218 21 C -0.211 4.211 22 C 0.009 3.991 23 C -0.145 4.145 24 C -0.171 4.171 25 C -0.181 4.181 26 C -0.175 4.175 27 H 0.107 0.893 28 H 0.033 0.967 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.109 0.891 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.906 1.842 -17.080 17.285 hybrid contribution -0.259 -0.405 0.945 1.060 sum -2.166 1.437 -16.135 16.343 Atomic orbital electron populations 1.22159 0.98268 1.00705 0.99290 1.18679 0.91240 0.92825 0.80418 0.92461 1.21409 1.31493 1.12899 0.90181 0.92075 1.24886 0.94966 0.94992 0.98928 1.69876 1.36716 1.22692 1.23585 0.86478 0.78606 0.79738 0.82815 1.19753 1.20895 1.21028 1.57782 1.64145 1.24009 1.37446 1.21151 1.00920 0.83683 0.98017 1.02132 0.73952 0.73046 0.72343 1.93526 1.70731 1.57866 1.75483 1.93582 1.72863 1.59994 1.69087 1.58158 1.72538 1.17776 1.35571 1.20845 0.95337 0.80667 1.00700 1.23146 0.95961 0.97328 1.03366 1.22976 0.97882 1.05111 0.95804 1.22899 1.03663 0.94973 0.99522 1.21227 0.98338 0.95542 0.83955 1.22941 0.97002 1.00437 0.94102 1.22872 0.96524 1.01189 0.96479 1.22808 0.96676 1.01721 0.96896 1.23046 0.96964 1.01985 0.95511 0.89299 0.96688 0.94565 0.92846 0.93327 0.91043 0.93552 0.88737 0.90681 0.85961 0.89296 0.89242 0.88500 0.88959 0.91267 0.89944 0.88995 0.91660 0.89994 0.91638 0.90571 0.89121 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.24 37.16 0.31 -2.89 16 2 C 0.27 6.54 2.40 -69.08 -0.17 6.37 16 3 H 0.06 1.54 7.01 -51.93 -0.36 1.17 16 4 C -0.52 -14.10 8.48 -34.44 -0.29 -14.39 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.60 11.40 55.43 0.63 -23.97 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.99 -20.52 3.12 -115.85 -0.36 -20.88 16 13 C 0.11 1.92 9.81 59.84 0.59 2.51 16 14 S 2.78 55.23 5.98 -107.50 -0.64 54.59 16 15 O -0.99 -20.41 16.15 -57.17 -0.92 -21.33 16 16 O -0.97 -22.94 15.18 -57.17 -0.87 -23.81 16 17 N -1.00 -15.28 2.95 -114.38 -0.34 -15.62 16 18 C 0.15 2.13 5.82 -4.04 -0.02 2.11 16 19 C -0.18 -2.57 6.01 -90.62 -0.54 -3.11 16 20 C -0.18 -2.09 10.18 -26.69 -0.27 -2.36 16 21 C -0.17 -2.24 10.25 -26.69 -0.27 -2.52 16 22 C 0.14 1.68 5.57 -4.04 -0.02 1.66 16 23 C -0.12 -1.35 3.77 -89.71 -0.34 -1.69 16 24 C -0.13 -1.18 7.64 -25.92 -0.20 -1.38 16 25 C -0.14 -1.32 8.08 -25.92 -0.21 -1.53 16 26 C -0.14 -1.61 7.64 -25.83 -0.20 -1.81 16 27 H 0.09 2.17 6.29 -51.93 -0.33 1.85 16 28 H 0.01 0.28 5.74 -51.93 -0.30 -0.02 16 29 H 0.04 0.77 6.83 -51.93 -0.35 0.42 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.21 6.26 -51.93 -0.33 0.88 16 33 H 0.05 0.68 7.32 -51.93 -0.38 0.30 16 34 H 0.09 1.50 6.87 -51.93 -0.36 1.14 16 35 H 0.07 0.86 6.38 -51.92 -0.33 0.53 16 36 H 0.12 2.06 5.17 -51.93 -0.27 1.79 16 37 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.05 6.46 -51.93 -0.34 0.72 16 43 H 0.09 0.96 6.73 -51.93 -0.35 0.61 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.18 7.91 -51.93 -0.41 0.77 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -30.75 389.34 -11.68 -42.43 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.29 Total: 3.80 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -1.74 Total: -17.37 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.07 Total: -60.47 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -1.79 Total: -45.14 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 55.23 SS G_CDS: -0.64 Total: 54.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.75 -11.68 -42.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337815213.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.789 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds