Wall clock time and date at job start Tue Mar 31 2020 16:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46820 * 2 1 4 4 C 1.50695 * 109.46958 * 239.99895 * 2 1 3 5 5 H 1.08001 * 120.00148 * 245.33559 * 4 2 1 6 6 C 1.37878 * 120.00282 * 65.33426 * 4 2 1 7 7 N 1.31515 * 119.99828 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00364 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47176 * 59.99809 * 8 6 4 10 10 H 1.48500 * 109.47109 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47123 * 300.00054 * 8 6 4 12 12 N 1.46503 * 109.47267 * 119.99897 * 2 1 3 13 13 C 1.46505 * 119.99646 * 55.06560 * 12 2 1 14 14 S 1.65594 * 120.00034 * 235.06544 * 12 2 1 15 15 O 1.42094 * 106.40221 * 161.76857 * 14 12 2 16 16 O 1.42102 * 106.40327 * 28.84668 * 14 12 2 17 17 N 1.65599 * 107.21775 * 275.31038 * 14 12 2 18 18 C 1.46505 * 119.99833 * 294.38279 * 17 14 12 19 19 H 1.09000 * 109.07001 * 23.60274 * 18 17 14 20 20 C 1.52561 * 109.08503 * 264.54386 * 18 17 14 21 21 C 1.53743 * 111.49594 * 294.27945 * 20 18 17 22 22 C 1.51777 * 107.24879 * 302.18225 * 21 20 18 23 23 H 1.08995 * 110.37361 * 304.28683 * 22 21 20 24 24 C 1.53270 * 115.79433 * 177.05042 * 22 21 20 25 25 C 1.55323 * 102.93939 * 202.84480 * 24 22 21 26 26 C 1.54914 * 106.37663 * 23.95250 * 25 24 22 27 27 C 1.52504 * 105.32447 * 3.45931 * 26 25 24 28 28 H 1.09003 * 109.78215 * 87.77472 * 27 26 25 29 29 C 1.51482 * 116.57629 * 213.36071 * 27 26 25 30 30 H 1.09007 * 109.47188 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47582 * 299.99737 * 1 2 3 32 32 H 1.08996 * 109.47352 * 60.00297 * 1 2 3 33 33 H 0.96999 * 119.99984 * 180.02562 * 7 6 4 34 34 H 1.09007 * 109.46834 * 269.99849 * 13 12 2 35 35 H 1.08994 * 109.47375 * 29.99820 * 13 12 2 36 36 H 1.09001 * 109.46712 * 150.00402 * 13 12 2 37 37 H 0.96997 * 120.00105 * 114.38873 * 17 14 12 38 38 H 1.08999 * 109.07527 * 54.80297 * 20 18 17 39 39 H 1.09005 * 109.07306 * 173.82713 * 20 18 17 40 40 H 1.09003 * 109.89561 * 61.61660 * 21 20 18 41 41 H 1.08998 * 109.89851 * 182.74649 * 21 20 18 42 42 H 1.08998 * 110.72253 * 321.20695 * 24 22 21 43 43 H 1.09001 * 110.72241 * 84.48391 * 24 22 21 44 44 H 1.08995 * 110.07470 * 264.72949 * 25 24 22 45 45 H 1.08999 * 110.12432 * 143.20719 * 25 24 22 46 46 H 1.08997 * 110.27665 * 244.49056 * 26 25 24 47 47 H 1.09003 * 110.27131 * 122.41278 * 26 25 24 48 48 H 1.09001 * 109.91271 * 60.20753 * 29 27 26 49 49 H 1.08996 * 109.81290 * 299.12778 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5803 -1.6360 -1.1337 6 6 1.7923 -0.1788 -2.4797 7 7 1.1245 0.9481 -2.5976 8 14 2.4155 -1.0590 -4.0049 9 1 1.8176 -2.4167 -4.0719 10 1 2.0300 -0.2876 -5.2139 11 1 3.8949 -1.1722 -3.9414 12 7 2.0184 -0.6906 1.1962 13 6 1.5775 -2.0578 1.4839 14 16 3.0686 0.0742 2.2230 15 8 3.0178 -0.6372 3.4520 16 8 2.7924 1.4641 2.1175 17 7 4.5941 -0.1466 1.6176 18 6 5.1748 -1.4907 1.5675 19 1 4.3703 -2.2261 1.5577 20 6 6.0353 -1.7090 2.8082 21 6 7.2574 -0.7762 2.8175 22 6 8.0406 -1.0479 1.5461 23 1 8.2978 -2.1048 1.4775 24 6 9.2733 -0.1654 1.3208 25 6 9.4783 -0.2405 -0.2170 26 6 8.0989 -0.5981 -0.8246 27 6 7.1345 -0.6305 0.3563 28 1 6.7322 0.3674 0.5315 29 6 6.0018 -1.6333 0.2790 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.9554 1.3219 -3.4765 34 1 0.6739 -2.0276 2.0928 35 1 1.3682 -2.5765 0.5485 36 1 2.3625 -2.5864 2.0248 37 1 5.1032 0.6139 1.2963 38 1 5.4340 -1.5173 3.6969 39 1 6.3779 -2.7436 2.8266 40 1 6.9304 0.2635 2.8369 41 1 7.8784 -0.9871 3.6881 42 1 9.0761 0.8598 1.6339 43 1 10.1387 -0.5704 1.8454 44 1 10.2061 -1.0146 -0.4601 45 1 9.8163 0.7233 -0.5978 46 1 8.1400 -1.5753 -1.3057 47 1 7.7929 0.1641 -1.5413 48 1 6.4047 -2.6436 0.2067 49 1 5.3773 -1.4191 -0.5882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337994413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:52 Heat of formation + Delta-G solvation = -103.231617 kcal Electronic energy + Delta-G solvation = -29071.471653 eV Core-core repulsion = 25351.867374 eV Total energy + Delta-G solvation = -3719.604279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.07823 -36.67224 -36.17017 -35.84106 -35.18980 -32.58445 -32.29145 -30.76766 -29.12613 -28.00510 -26.81048 -25.57620 -25.11047 -22.48635 -21.00509 -20.71927 -20.19936 -19.91931 -18.45797 -17.17725 -16.76779 -16.35669 -16.01926 -15.17453 -14.95066 -14.86836 -14.58051 -14.24668 -13.74672 -13.44810 -13.41148 -13.18537 -13.09656 -12.68897 -12.26622 -12.12529 -11.99761 -11.89269 -11.74957 -11.48627 -11.35894 -11.30366 -11.18559 -11.12679 -11.01012 -10.97955 -10.87749 -10.72933 -10.53270 -10.43763 -10.36223 -10.28683 -10.12836 -10.00087 -9.89347 -9.34622 -9.02457 -8.49509 -7.95657 -6.10681 -4.18138 1.33585 3.23684 3.30151 3.30506 3.56692 4.19777 4.34353 4.41246 4.60325 4.64167 5.01028 5.03523 5.05086 5.19969 5.20959 5.24141 5.34574 5.49573 5.52167 5.59833 5.61224 5.65069 5.73185 5.78682 5.80352 5.94421 5.98961 5.99354 6.10610 6.12040 6.14891 6.21138 6.29740 6.30909 6.42035 6.47717 6.56151 6.61893 6.63466 6.83534 6.84556 7.10627 7.32496 7.54244 7.61511 7.77786 7.99433 8.24113 8.84996 9.47821 10.95535 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011026 B = 0.005631 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.777022 B = 4971.003695 C = 6713.205086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.268 3.732 3 H 0.060 0.940 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.992 5.992 13 C 0.106 3.894 14 S 2.782 3.218 15 O -1.000 7.000 16 O -0.986 6.986 17 N -1.119 6.119 18 C 0.166 3.834 19 H 0.080 0.920 20 C -0.136 4.136 21 C -0.106 4.106 22 C -0.096 4.096 23 H 0.075 0.925 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.094 4.094 28 H 0.073 0.927 29 C -0.115 4.115 30 H 0.033 0.967 31 H 0.014 0.986 32 H 0.083 0.917 33 H 0.264 0.736 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.410 0.590 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.987 -5.635 6.251 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.078 0.922 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.834 5.834 13 C -0.041 4.041 14 S 2.791 3.209 15 O -0.983 6.983 16 O -0.970 6.970 17 N -0.879 5.879 18 C 0.058 3.942 19 H 0.098 0.902 20 C -0.176 4.176 21 C -0.143 4.143 22 C -0.115 4.115 23 H 0.093 0.907 24 C -0.155 4.155 25 C -0.161 4.161 26 C -0.155 4.155 27 C -0.112 4.112 28 H 0.092 0.908 29 C -0.154 4.154 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.244 0.756 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.565 -5.178 6.983 15.279 hybrid contribution 0.562 -0.359 -1.544 1.682 sum 13.128 -5.537 5.438 15.250 Atomic orbital electron populations 1.21993 0.98140 0.99509 1.00312 1.18696 0.91743 0.92819 0.80181 0.92241 1.21326 1.35841 1.08843 0.90313 0.91994 1.24922 0.95063 0.94883 0.98908 1.69903 1.39708 1.18803 1.24083 0.86644 0.79264 0.79612 0.82342 1.20324 1.21342 1.20222 1.57724 1.60087 1.24603 1.40997 1.21211 0.98571 0.83122 1.01203 1.01781 0.72689 0.73071 0.73336 1.93531 1.86904 1.75085 1.42795 1.93586 1.83912 1.32297 1.87225 1.56136 1.35144 1.14516 1.82072 1.20636 0.95829 0.83211 0.94485 0.90198 1.22082 0.97041 0.99581 0.98848 1.21358 0.95926 1.00162 0.96900 1.21940 0.94528 0.99605 0.95400 0.90711 1.22195 0.97589 0.99962 0.95744 1.22491 0.97226 1.01053 0.95290 1.21928 0.94368 1.01675 0.97566 1.21625 0.94935 0.99765 0.94913 0.90824 1.21657 0.96849 0.98967 0.97910 0.94763 0.96705 0.89868 0.92612 0.93976 0.90432 0.93050 0.75563 0.90601 0.91509 0.91699 0.92194 0.91599 0.92074 0.92198 0.92154 0.91817 0.91680 0.91137 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.94 37.16 0.33 -2.93 16 2 C 0.27 6.42 2.53 -69.08 -0.17 6.25 16 3 H 0.06 1.60 6.99 -51.93 -0.36 1.24 16 4 C -0.52 -12.99 8.07 -34.44 -0.28 -13.27 16 5 H 0.06 1.48 7.49 -52.49 -0.39 1.09 16 6 C 0.07 1.68 5.32 -17.82 -0.09 1.59 16 7 N -0.89 -24.16 11.72 55.43 0.65 -23.51 16 8 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.99 -20.09 3.12 -115.85 -0.36 -20.46 16 13 C 0.11 1.83 8.99 59.85 0.54 2.37 16 14 S 2.78 54.09 5.99 -107.50 -0.64 53.45 16 15 O -1.00 -20.01 16.21 -57.17 -0.93 -20.93 16 16 O -0.99 -22.66 16.83 -57.17 -0.96 -23.62 16 17 N -1.12 -17.73 5.10 -4.74 -0.02 -17.75 16 18 C 0.17 2.27 2.92 -67.75 -0.20 2.07 16 19 H 0.08 1.11 6.70 -51.93 -0.35 0.76 16 20 C -0.14 -1.64 5.48 -26.57 -0.15 -1.79 16 21 C -0.11 -1.15 5.52 -26.97 -0.15 -1.30 16 22 C -0.10 -0.99 2.37 -89.90 -0.21 -1.20 16 23 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 24 C -0.12 -1.10 6.45 -25.36 -0.16 -1.27 16 25 C -0.12 -1.17 6.87 -24.49 -0.17 -1.34 16 26 C -0.12 -1.30 6.50 -25.98 -0.17 -1.47 16 27 C -0.09 -1.10 2.19 -90.44 -0.20 -1.30 16 28 H 0.07 0.93 6.10 -51.93 -0.32 0.62 16 29 C -0.12 -1.47 5.33 -27.10 -0.14 -1.61 16 30 H 0.03 0.74 7.56 -51.93 -0.39 0.35 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 2.11 6.50 -51.93 -0.34 1.78 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.35 7.29 -51.93 -0.38 0.97 16 36 H 0.05 0.77 6.55 -51.93 -0.34 0.43 16 37 H 0.41 6.11 6.95 -34.47 -0.24 5.87 16 38 H 0.08 1.03 7.56 -51.93 -0.39 0.64 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.75 7.84 -51.93 -0.41 0.35 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 49 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -29.65 378.77 -11.33 -40.99 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.53 Total: 6.33 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -1.23 Total: -15.21 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.26 Total: -61.72 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.89 Total: -44.55 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.64 Total: 53.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.65 -11.33 -40.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337994413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.244 kcal (2) G-P(sol) polarization free energy of solvation -29.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds