Wall clock time and date at job start Tue Mar 31 2020 18:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46489 * 120.00051 * 2 1 4 4 C 1.50706 * 109.47499 * 275.00002 * 3 2 1 5 5 H 1.08003 * 119.98953 * 359.97438 * 4 3 2 6 6 C 1.37870 * 120.00408 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99852 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00096 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47493 * 89.99644 * 8 6 4 10 10 H 1.48500 * 109.47046 * 209.99973 * 8 6 4 11 11 H 1.48497 * 109.46983 * 329.99552 * 8 6 4 12 12 S 1.65606 * 119.99819 * 179.97438 * 2 1 3 13 13 O 1.42105 * 106.40008 * 156.45998 * 12 2 1 14 14 O 1.42098 * 106.40370 * 23.54183 * 12 2 1 15 15 N 1.65595 * 107.22013 * 269.99910 * 12 2 1 16 16 C 1.46932 * 120.65051 * 269.72958 * 15 12 2 17 17 C 1.52720 * 109.03130 * 233.59663 * 16 15 12 18 18 C 1.53032 * 109.42044 * 305.61613 * 17 16 15 19 19 C 1.53011 * 109.44085 * 181.10641 * 18 17 16 20 20 C 1.53001 * 109.48196 * 60.02030 * 19 18 17 21 21 C 1.53000 * 109.46476 * 60.01375 * 20 19 18 22 22 C 1.53001 * 109.45812 * 299.97437 * 21 20 19 23 23 C 1.52986 * 109.47627 * 301.09399 * 18 17 16 24 24 C 1.53041 * 109.55261 * 61.14314 * 18 17 16 25 25 C 1.46932 * 120.64549 * 90.00142 * 15 12 2 26 26 H 1.08999 * 109.47095 * 270.00091 * 1 2 3 27 27 H 1.08991 * 109.46942 * 30.00504 * 1 2 3 28 28 H 1.09009 * 109.46796 * 150.00143 * 1 2 3 29 29 H 1.09000 * 109.47424 * 35.00059 * 3 2 1 30 30 H 1.08996 * 109.47539 * 154.99888 * 3 2 1 31 31 H 0.97003 * 119.99643 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.58483 * 353.43355 * 16 15 12 33 33 H 1.08993 * 109.58551 * 113.86157 * 16 15 12 34 34 H 1.09000 * 109.56241 * 185.55676 * 17 16 15 35 35 H 1.09004 * 109.36063 * 65.53992 * 17 16 15 36 36 H 1.09001 * 109.46764 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.47268 * 300.01555 * 19 18 17 38 38 H 1.08997 * 109.47048 * 300.01247 * 20 19 18 39 39 H 1.09006 * 109.47168 * 180.02562 * 20 19 18 40 40 H 1.09003 * 109.47457 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.47886 * 59.97668 * 21 20 19 42 42 H 1.09003 * 109.46802 * 300.00839 * 22 21 20 43 43 H 1.09001 * 109.46740 * 180.02562 * 22 21 20 44 44 H 1.08999 * 109.46913 * 59.98936 * 23 18 17 45 45 H 1.09003 * 109.46782 * 179.97438 * 23 18 17 46 46 H 1.08998 * 109.48998 * 178.74966 * 24 18 17 47 47 H 1.09003 * 109.51132 * 58.68208 * 24 18 17 48 48 H 1.09001 * 109.58955 * 246.12910 * 25 15 12 49 49 H 1.08996 * 109.58884 * 6.41081 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9289 1.1934 -2.2332 6 6 2.9998 2.9508 -1.6664 7 7 3.1258 3.3842 -2.9017 8 14 3.7139 3.9402 -0.2520 9 1 5.1112 3.5054 0.0005 10 1 3.6999 5.3836 -0.6009 11 1 2.8982 3.7182 0.9689 12 16 2.2930 -1.4342 0.0006 13 8 3.5760 -1.1571 -0.5439 14 8 1.4114 -2.4068 -0.5434 15 7 2.5381 -1.8581 1.5826 16 6 3.7466 -1.4227 2.2961 17 6 4.4362 -2.6446 2.8992 18 6 3.4382 -3.4161 3.7656 19 6 4.1359 -4.6252 4.3922 20 6 5.3023 -4.1481 5.2599 21 6 4.7735 -3.2344 6.3673 22 6 4.0764 -2.0251 5.7408 23 6 2.9102 -2.5017 4.8726 24 6 2.2709 -3.8949 2.8994 25 6 1.5543 -2.6818 2.2983 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5139 29 1 1.6502 2.0042 0.5894 30 1 3.1857 1.1177 0.4343 31 1 3.5893 4.2179 -3.0782 32 1 4.4243 -0.9293 1.5995 33 1 3.4715 -0.7318 3.0929 34 1 5.2779 -2.3230 3.5125 35 1 4.7958 -3.2892 2.0971 36 1 3.4253 -5.1753 5.0091 37 1 4.5125 -5.2764 3.6035 38 1 6.0127 -3.5979 4.6431 39 1 5.7995 -5.0096 5.7059 40 1 5.6043 -2.8948 6.9859 41 1 4.0627 -3.7844 6.9840 42 1 4.7873 -1.4751 5.1241 43 1 3.7000 -1.3738 6.5296 44 1 2.4138 -1.6401 4.4262 45 1 2.1990 -3.0512 5.4894 46 1 1.5718 -4.4632 3.5130 47 1 2.6488 -4.5285 2.0970 48 1 1.0974 -2.0953 3.0955 49 1 0.7839 -3.0169 1.6039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338723813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:48 Heat of formation + Delta-G solvation = -91.465415 kcal Electronic energy + Delta-G solvation = -28846.048425 eV Core-core repulsion = 25126.954367 eV Total energy + Delta-G solvation = -3719.094058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.49580 -36.73827 -36.46164 -35.60932 -35.18751 -32.40488 -32.35355 -31.10161 -30.97220 -28.38247 -27.06140 -25.14809 -23.69452 -23.42842 -22.37927 -21.85421 -20.69009 -18.97661 -17.94129 -17.40074 -16.89672 -16.61396 -15.83416 -15.65044 -14.93803 -14.84273 -14.59576 -14.41317 -14.20650 -13.98348 -13.60618 -13.42235 -13.24502 -12.98664 -12.54169 -12.52460 -12.36619 -12.32301 -12.01953 -11.82190 -11.74203 -11.52226 -11.48807 -11.34290 -11.27445 -11.22986 -11.19003 -11.01207 -10.66775 -10.56193 -10.44923 -10.24219 -10.22867 -10.13463 -10.00950 -9.55349 -8.80251 -8.59520 -8.09578 -6.08381 -4.07767 1.11620 3.26234 3.31448 3.32734 3.43107 4.02050 4.37745 4.38666 4.43979 4.53107 4.77661 4.80632 4.96217 5.00107 5.13124 5.16352 5.18725 5.21660 5.22822 5.34649 5.38091 5.46206 5.49752 5.56506 5.61094 5.66148 5.71222 5.74032 5.80854 5.84275 5.88123 5.93634 5.94500 5.98349 6.04440 6.10284 6.17025 6.20525 6.30834 6.34970 6.41729 6.44496 6.67526 6.78730 7.08818 7.40727 7.57899 8.49028 8.96452 9.50540 11.05262 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.004109 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.956358 B = 6812.397506 C = 7712.846231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.992 5.992 3 C 0.229 3.771 4 C -0.532 4.532 5 H 0.077 0.923 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.780 3.220 13 O -0.960 6.960 14 O -0.992 6.992 15 N -1.010 6.010 16 C 0.117 3.883 17 C -0.124 4.124 18 C -0.053 4.053 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.113 4.113 24 C -0.120 4.120 25 C 0.119 3.881 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.032 0.968 30 H 0.027 0.973 31 H 0.265 0.735 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -13.795 20.112 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.833 5.833 3 C 0.105 3.895 4 C -0.571 4.571 5 H 0.095 0.905 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.698 3.302 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 S 2.789 3.211 13 O -0.944 6.944 14 O -0.976 6.976 15 N -0.849 5.849 16 C -0.009 4.009 17 C -0.162 4.162 18 C -0.053 4.053 19 C -0.145 4.145 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.159 4.159 25 C -0.007 4.007 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.154 -14.105 19.222 23.843 hybrid contribution 0.294 0.890 0.932 1.322 sum 0.140 -13.215 20.155 24.101 Atomic orbital electron populations 1.21364 0.79779 1.03827 1.00165 1.57460 1.14462 1.22616 1.88783 1.19405 0.90717 0.80841 0.98530 1.21388 1.36865 1.07002 0.91872 0.90476 1.24871 0.95371 0.97178 0.95537 1.69902 1.42551 1.22010 1.18858 0.86923 0.80400 0.79758 0.83075 1.19755 1.20935 1.18953 1.02038 0.73469 0.72781 0.72784 1.93619 1.40446 1.84876 1.75434 1.93512 1.67433 1.60104 1.76550 1.58419 1.28986 1.65032 1.32431 1.21345 0.85924 0.96443 0.97176 1.21940 0.97915 0.97325 0.99058 1.20464 0.95112 0.95165 0.94578 1.21580 0.97296 0.96858 0.98742 1.21581 0.97961 0.99130 0.97286 1.21514 0.99743 0.96668 0.97556 1.21586 0.97988 0.97443 0.98999 1.21681 0.97549 0.99470 0.96282 1.21912 0.97357 0.97458 0.99202 1.21374 0.90760 0.91568 0.96951 0.94260 0.90208 0.91372 0.94991 0.95503 0.92519 0.88861 0.91560 0.90349 0.91482 0.92099 0.92051 0.91568 0.92401 0.92416 0.92327 0.91520 0.92303 0.91159 0.92181 0.91061 0.91392 0.91645 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.61 10.68 59.85 0.64 2.25 16 2 N -0.99 -20.30 3.23 -123.06 -0.40 -20.70 16 3 C 0.23 5.39 4.15 -5.20 -0.02 5.37 16 4 C -0.53 -15.28 9.94 -34.44 -0.34 -15.62 16 5 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.89 -27.62 13.96 55.43 0.77 -26.85 16 8 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 12 S 2.78 55.08 6.10 -107.50 -0.66 54.43 16 13 O -0.96 -22.77 15.69 -57.17 -0.90 -23.67 16 14 O -0.99 -20.63 15.33 -57.17 -0.88 -21.51 16 15 N -1.01 -14.89 3.35 -113.79 -0.38 -15.27 16 16 C 0.12 1.55 5.98 -3.95 -0.02 1.53 16 17 C -0.12 -1.35 4.19 -26.86 -0.11 -1.46 16 18 C -0.05 -0.49 0.51 -154.47 -0.08 -0.57 16 19 C -0.11 -0.87 4.73 -26.73 -0.13 -1.00 16 20 C -0.12 -0.93 5.65 -26.73 -0.15 -1.08 16 21 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 22 C -0.12 -0.98 5.65 -26.73 -0.15 -1.13 16 23 C -0.11 -0.96 3.98 -26.74 -0.11 -1.07 16 24 C -0.12 -1.20 4.90 -26.62 -0.13 -1.33 16 25 C 0.12 1.40 6.01 -3.71 -0.02 1.38 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 28 H 0.07 1.11 7.02 -51.92 -0.36 0.75 16 29 H 0.03 0.72 7.17 -51.93 -0.37 0.35 16 30 H 0.03 0.63 7.04 -51.93 -0.37 0.26 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.09 1.42 6.91 -51.93 -0.36 1.06 16 33 H 0.07 0.78 6.70 -51.93 -0.35 0.43 16 34 H 0.08 0.75 4.81 -51.93 -0.25 0.50 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.53 6.40 -51.93 -0.33 0.20 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.57 6.46 -51.93 -0.34 0.23 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.66 5.00 -51.93 -0.26 0.40 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.66 6.70 -51.93 -0.35 0.31 16 49 H 0.09 1.09 6.92 -51.93 -0.36 0.73 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -33.98 368.77 -10.78 -44.76 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -8.35 Total: -1.36 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.88 Total: -11.72 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.00 Total: -62.82 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.77 Total: -45.17 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: 55.08 SS G_CDS: -0.66 Total: 54.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.98 -10.78 -44.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338723813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.704 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds