Wall clock time and date at job start Tue Mar 31 2020 16:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46508 * 2 1 4 4 C 1.53232 * 109.47167 * 240.00317 * 2 1 3 5 5 H 1.08996 * 109.58426 * 302.13419 * 4 2 1 6 6 C 1.53009 * 109.58077 * 62.40617 * 4 2 1 7 7 S 1.81743 * 108.91503 * 182.26622 * 4 2 1 8 8 O 1.42098 * 109.47275 * 170.64566 * 7 4 2 9 9 C 1.82116 * 102.15802 * 54.49680 * 7 4 2 10 10 C 1.53238 * 108.85868 * 305.52865 * 9 7 4 11 11 N 1.46382 * 109.48375 * 57.64869 * 10 9 7 12 12 C 1.34775 * 119.65126 * 114.88769 * 11 10 9 13 13 O 1.21592 * 120.00328 * 186.01465 * 12 11 10 14 14 N 1.34779 * 119.99613 * 6.02021 * 12 11 10 15 15 C 1.46507 * 119.99866 * 185.28144 * 14 12 11 16 16 C 1.52993 * 109.46878 * 180.02562 * 15 14 12 17 17 C 1.53007 * 109.47507 * 300.00083 * 16 15 14 18 18 C 1.53002 * 109.47341 * 60.00375 * 16 15 14 19 19 C 1.52998 * 109.46983 * 180.02562 * 16 15 14 20 20 C 1.50700 * 109.47293 * 180.02562 * 19 16 15 21 21 H 1.07996 * 119.99950 * 359.97438 * 20 19 16 22 22 C 1.37874 * 120.00163 * 180.02562 * 20 19 16 23 23 N 1.31516 * 120.00063 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 120.00325 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46882 * 89.99719 * 24 22 20 26 26 H 1.48493 * 109.47062 * 209.99632 * 24 22 20 27 27 H 1.48504 * 109.46640 * 329.99772 * 24 22 20 28 28 H 1.09007 * 109.46755 * 172.86113 * 1 2 3 29 29 H 1.09002 * 109.47558 * 292.86138 * 1 2 3 30 30 H 1.08994 * 109.47265 * 52.86723 * 1 2 3 31 31 H 1.08997 * 109.47054 * 59.72869 * 6 4 2 32 32 H 1.08998 * 109.47021 * 179.72323 * 6 4 2 33 33 H 1.08998 * 109.47014 * 299.72896 * 6 4 2 34 34 H 1.09001 * 109.56155 * 185.71240 * 9 7 4 35 35 H 1.08997 * 109.54399 * 65.33807 * 9 7 4 36 36 H 1.08995 * 109.47452 * 297.64550 * 10 9 7 37 37 H 1.08998 * 109.47124 * 177.64647 * 10 9 7 38 38 H 0.97002 * 120.00264 * 5.28279 * 14 12 11 39 39 H 1.08993 * 109.47034 * 300.00170 * 15 14 12 40 40 H 1.09000 * 109.46989 * 60.00218 * 15 14 12 41 41 H 1.09006 * 109.46670 * 59.99875 * 17 16 15 42 42 H 1.08996 * 109.47300 * 179.97438 * 17 16 15 43 43 H 1.09005 * 109.46866 * 300.00659 * 17 16 15 44 44 H 1.09002 * 109.47157 * 59.99668 * 18 16 15 45 45 H 1.08998 * 109.46943 * 179.97438 * 18 16 15 46 46 H 1.08997 * 109.46858 * 299.99557 * 18 16 15 47 47 H 1.09002 * 109.46940 * 299.99979 * 19 16 15 48 48 H 1.09000 * 109.47207 * 60.00016 * 19 16 15 49 49 H 0.97003 * 120.00341 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0408 -0.7223 -1.2512 5 1 1.6476 -1.7386 -1.2724 6 6 1.5821 0.0312 -2.5014 7 16 3.8568 -0.7725 -1.2023 8 8 4.3352 -1.6216 -2.2364 9 6 4.1758 -1.5416 0.4174 10 6 3.4489 -0.7363 1.4998 11 7 2.0179 -0.6898 1.1954 12 6 1.1401 -1.2888 2.0243 13 8 -0.0364 -1.3493 1.7233 14 7 1.5664 -1.8206 3.1870 15 6 0.6362 -2.5722 4.0334 16 6 1.3679 -3.0633 5.2841 17 6 2.5295 -3.9702 4.8725 18 6 1.9094 -1.8627 6.0627 19 6 0.3967 -3.8488 6.1677 20 6 1.1172 -4.3320 7.3999 21 1 2.1633 -4.1022 7.5388 22 6 0.4412 -5.0683 8.3495 23 7 -0.8326 -5.3485 8.1802 24 14 1.3344 -5.6679 9.8767 25 1 1.2227 -4.6462 10.9486 26 1 0.7240 -6.9399 10.3398 27 1 2.7666 -5.8941 9.5557 28 1 -0.3633 -1.0198 -0.1277 29 1 -0.3634 0.3992 0.9469 30 1 -0.3633 0.6203 -0.8192 31 1 1.9763 1.0472 -2.4783 32 1 1.9505 -0.4813 -3.3900 33 1 0.4930 0.0646 -2.5264 34 1 5.2472 -1.5392 0.6180 35 1 3.8051 -2.5665 0.4138 36 1 3.8475 0.2778 1.5275 37 1 3.5988 -1.2122 2.4689 38 1 2.4891 -1.7057 3.4635 39 1 -0.1910 -1.9261 4.3270 40 1 0.2502 -3.4274 3.4786 41 1 3.2215 -3.4109 4.2428 42 1 3.0510 -4.3196 5.7635 43 1 2.1437 -4.8255 4.3178 44 1 1.0819 -1.2166 6.3560 45 1 2.4302 -2.2126 6.9539 46 1 2.6014 -1.3035 5.4330 47 1 -0.4310 -3.2031 6.4609 48 1 0.0113 -4.7042 5.6128 49 1 -1.3083 -5.8662 8.8485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358676813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:14 Heat of formation + Delta-G solvation = -53.940821 kcal Electronic energy + Delta-G solvation = -27715.014460 eV Core-core repulsion = 23997.547590 eV Total energy + Delta-G solvation = -3717.466870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74596 -37.83253 -36.53984 -35.95755 -35.00438 -33.31629 -32.04213 -30.89960 -28.92887 -27.10278 -26.55863 -26.23774 -25.08066 -23.82471 -22.83300 -21.51443 -19.98600 -18.66024 -17.89608 -17.44803 -16.62104 -16.22814 -16.09071 -15.75372 -15.25752 -14.99266 -14.82716 -14.46186 -14.31760 -13.90280 -13.49356 -13.38990 -13.13548 -13.08241 -12.86019 -12.49488 -12.46482 -12.44360 -12.13316 -12.08887 -12.03556 -11.91523 -11.66467 -11.30890 -11.17039 -11.04648 -10.87822 -10.67277 -10.43162 -10.28273 -10.07788 -9.91135 -9.31986 -9.10482 -8.97129 -8.95185 -8.60207 -8.58880 -8.38332 -6.02327 -4.03844 1.17076 2.14747 2.52988 3.20598 3.28849 3.36091 3.37516 3.43505 3.85785 4.25224 4.42799 4.53343 4.58801 4.64990 4.77749 4.86755 5.09261 5.18963 5.25640 5.33173 5.36734 5.46057 5.49588 5.59878 5.64332 5.65747 5.70567 5.77435 6.10542 6.12026 6.13013 6.21059 6.27851 6.36694 6.52311 6.58581 6.63514 6.78612 6.82352 7.02549 7.03592 7.10175 7.61351 7.73479 7.95832 8.00480 8.37681 8.68234 9.00942 9.59440 11.09105 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.024717 B = 0.002621 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.553607 B =10680.678085 C =11315.599738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.190 3.810 3 H 0.089 0.911 4 C -0.420 4.420 5 H 0.096 0.904 6 C -0.125 4.125 7 S 1.237 4.763 8 O -0.850 6.850 9 C -0.460 4.460 10 C 0.135 3.865 11 N -0.641 5.641 12 C 0.700 3.300 13 O -0.577 6.577 14 N -0.738 5.738 15 C 0.145 3.855 16 C -0.072 4.072 17 C -0.126 4.126 18 C -0.125 4.125 19 C 0.037 3.963 20 C -0.512 4.512 21 H 0.059 0.941 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.889 3.111 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.275 1.275 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.392 0.608 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.026 0.974 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.027 0.973 47 H 0.019 0.981 48 H 0.018 0.982 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.381 16.511 -17.257 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.085 3.915 3 H 0.106 0.894 4 C -0.539 4.539 5 H 0.114 0.886 6 C -0.184 4.184 7 S 1.436 4.564 8 O -0.846 6.846 9 C -0.598 4.598 10 C 0.010 3.990 11 N -0.379 5.379 12 C 0.402 3.598 13 O -0.455 6.455 14 N -0.396 5.396 15 C 0.022 3.978 16 C -0.073 4.073 17 C -0.183 4.183 18 C -0.182 4.182 19 C -0.001 4.001 20 C -0.550 4.550 21 H 0.077 0.923 22 C -0.145 4.145 23 N -0.534 5.534 24 Si 0.717 3.283 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.200 1.200 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.230 0.770 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.037 16.620 -18.080 26.530 hybrid contribution 0.050 -2.721 1.237 2.989 sum 10.087 13.899 -16.843 24.054 Atomic orbital electron populations 1.22250 0.91529 1.03702 1.01397 1.20637 0.97101 0.93842 0.79942 0.89362 1.27897 1.19184 1.05737 1.01081 0.88583 1.21443 1.03019 0.99685 0.94265 1.70387 0.87412 1.14962 0.83674 1.93123 1.72687 1.70849 1.47915 1.28048 1.07059 1.08971 1.15748 1.21107 0.79883 1.00619 0.97420 1.47356 1.05800 1.59125 1.25631 1.16053 0.84880 0.78330 0.80518 1.90992 1.15781 1.63374 1.75346 1.45752 1.14914 1.57997 1.20891 1.21500 0.91407 0.94504 0.90399 1.20916 0.97079 0.95943 0.93363 1.21756 0.97212 0.98579 1.00761 1.21744 0.99892 0.96677 0.99934 1.19081 0.93291 0.94401 0.93300 1.21172 0.96471 1.33151 1.04197 0.92275 1.25014 0.94840 0.96339 0.98286 1.69964 1.08597 1.39540 1.35252 0.86650 0.79827 0.78269 0.83577 1.20740 1.21337 1.19962 0.90390 0.90738 0.94021 0.91205 0.92134 0.90754 0.85723 0.88948 0.89144 0.89266 0.76977 0.91794 0.92216 0.95537 0.91398 0.93454 0.93278 0.91457 0.95417 0.96283 0.96393 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 7.07 37.16 0.26 -1.16 16 2 C 0.19 1.58 2.83 -67.87 -0.19 1.39 16 3 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 4 C -0.42 -3.51 2.79 -26.61 -0.07 -3.58 16 5 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 6 C -0.13 -0.83 8.92 37.16 0.33 -0.50 16 7 S 1.24 9.02 13.11 -107.50 -1.41 7.61 16 8 O -0.85 -11.97 18.15 -35.23 -0.64 -12.61 16 9 C -0.46 -3.29 6.66 37.28 0.25 -3.04 16 10 C 0.13 0.88 6.22 -3.98 -0.02 0.85 16 11 N -0.64 -6.30 2.79 -171.70 -0.48 -6.78 16 12 C 0.70 9.89 8.06 -86.92 -0.70 9.19 16 13 O -0.58 -10.07 11.65 5.28 0.06 -10.01 16 14 N -0.74 -10.25 4.83 -65.23 -0.32 -10.57 16 15 C 0.15 2.51 4.57 -4.04 -0.02 2.49 16 16 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 17 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 18 C -0.13 -2.10 8.05 37.16 0.30 -1.81 16 19 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 20 C -0.51 -13.40 7.65 -34.44 -0.26 -13.67 16 21 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 22 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 24 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.08 1.09 6.64 -51.92 -0.34 0.75 16 29 H 0.07 0.96 6.69 -51.93 -0.35 0.62 16 30 H 0.04 0.35 6.89 -51.93 -0.36 0.00 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.50 6.69 -51.93 -0.35 0.15 16 34 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.09 0.60 5.45 -51.93 -0.28 0.32 16 38 H 0.39 4.55 3.58 -40.82 -0.15 4.41 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 46 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -36.25 378.29 -9.65 -45.89 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.15 Total: 1.17 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.13 Total: -10.88 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.06 Total: -42.88 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.58 Total: -22.62 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 9.02 SS G_CDS: -1.41 Total: 7.61 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.25 -9.65 -45.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358676813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.046 kcal (2) G-P(sol) polarization free energy of solvation -36.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds