Wall clock time and date at job start Tue Mar 31 2020 17:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47014 * 2 1 4 4 C 1.50694 * 109.47696 * 120.00010 * 2 1 3 5 5 H 1.08009 * 120.00332 * 119.99835 * 4 2 1 6 6 C 1.37874 * 120.00209 * 300.00248 * 4 2 1 7 7 N 1.31509 * 120.00578 * 179.97438 * 6 4 2 8 8 Si 1.86799 * 119.99883 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.47508 * 89.99766 * 8 6 4 10 10 H 1.48500 * 109.47087 * 209.99840 * 8 6 4 11 11 H 1.48499 * 109.46925 * 329.99946 * 8 6 4 12 12 N 1.46504 * 109.47127 * 240.00278 * 2 1 3 13 13 C 1.46489 * 120.00051 * 299.99795 * 12 2 1 14 14 S 1.65606 * 119.99819 * 119.99548 * 12 2 1 15 15 O 1.42105 * 106.40008 * 156.45998 * 14 12 2 16 16 O 1.42098 * 106.40370 * 23.54183 * 14 12 2 17 17 N 1.65595 * 107.22013 * 269.99910 * 14 12 2 18 18 C 1.46508 * 119.99876 * 65.00349 * 17 14 12 19 19 H 1.09001 * 115.54615 * 359.32330 * 18 17 14 20 20 C 1.53002 * 117.49643 * 213.62325 * 18 17 14 21 21 C 1.52997 * 117.50062 * 144.99868 * 18 17 14 22 22 H 1.09005 * 117.49618 * 0.02562 * 21 18 17 23 23 C 1.52992 * 117.50023 * 215.00121 * 21 18 17 24 24 C 1.53003 * 109.47314 * 180.02562 * 23 21 18 25 25 C 1.52996 * 109.47230 * 180.02562 * 24 23 21 26 26 C 1.52997 * 109.47381 * 60.00016 * 25 24 23 27 27 C 1.53001 * 109.46964 * 299.99782 * 26 25 24 28 28 C 1.52997 * 109.47047 * 60.00212 * 23 21 18 29 29 H 1.09001 * 109.47014 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47209 * 299.99422 * 1 2 3 31 31 H 1.08997 * 109.47853 * 59.99970 * 1 2 3 32 32 H 0.96999 * 120.00674 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47302 * 269.99851 * 13 12 2 34 34 H 1.09005 * 109.47350 * 29.99843 * 13 12 2 35 35 H 1.08996 * 109.47412 * 149.99906 * 13 12 2 36 36 H 0.96997 * 120.00034 * 245.00377 * 17 14 12 37 37 H 1.08994 * 117.50210 * 359.97438 * 20 18 17 38 38 H 1.09001 * 117.49621 * 145.01805 * 20 18 17 39 39 H 1.09001 * 109.47232 * 300.00194 * 23 21 18 40 40 H 1.09001 * 109.47095 * 300.00235 * 24 23 21 41 41 H 1.08997 * 109.46733 * 60.00234 * 24 23 21 42 42 H 1.09001 * 109.46980 * 299.99946 * 25 24 23 43 43 H 1.09000 * 109.47215 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.47116 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.47120 * 60.00016 * 26 25 24 46 46 H 1.09001 * 109.47394 * 300.00067 * 27 26 25 47 47 H 1.08999 * 109.47269 * 179.97438 * 27 26 25 48 48 H 1.09000 * 109.47049 * 300.00125 * 28 23 21 49 49 H 1.09001 * 109.47120 * 59.99913 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8596 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8744 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0930 -1.4281 14 16 2.9703 0.1144 -2.2863 15 8 3.7118 -0.8787 -2.9816 16 8 3.5793 1.1831 -1.5749 17 7 1.9606 0.8092 -3.3998 18 6 1.0289 1.8620 -2.9874 19 1 1.0533 2.1233 -1.9295 20 6 -0.3229 1.9283 -3.7010 21 6 0.7456 2.9857 -3.9864 22 1 1.2520 2.9414 -4.9506 23 6 0.5182 4.3902 -3.4240 24 6 0.2522 5.3633 -4.5743 25 6 0.0254 6.7680 -4.0119 26 6 1.2693 7.2162 -3.2422 27 6 1.5353 6.2431 -2.0918 28 6 1.7615 4.8384 -2.6533 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3635 0.5138 -0.8899 32 1 1.9034 -0.5280 4.4375 33 1 2.4157 -2.7376 -0.9719 34 1 0.6904 -2.3002 -0.9847 35 1 1.6238 -2.2851 -2.5002 36 1 1.9859 0.5191 -4.3251 37 1 -0.5189 1.1890 -4.4775 38 1 -1.1882 2.2333 -3.1125 39 1 -0.3406 4.3782 -2.7528 40 1 1.1107 5.3754 -5.2459 41 1 -0.6338 5.0438 -5.1229 42 1 -0.8329 6.7562 -3.3402 43 1 -0.1646 7.4612 -4.8314 44 1 1.1075 8.2167 -2.8411 45 1 2.1277 7.2280 -3.9139 46 1 0.6769 6.2313 -1.4200 47 1 2.4217 6.5621 -1.5436 48 1 1.9506 4.1451 -1.8338 49 1 2.6203 4.8504 -3.3245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367167285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:31 Heat of formation + Delta-G solvation = -70.243574 kcal Electronic energy + Delta-G solvation = -28363.712637 eV Core-core repulsion = 24645.538827 eV Total energy + Delta-G solvation = -3718.173810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.43910 -37.16104 -36.72055 -36.41077 -35.33396 -32.62791 -32.50807 -30.83029 -30.07444 -30.00731 -25.82735 -25.04192 -23.48332 -22.91345 -21.84899 -20.93449 -20.45446 -19.88240 -18.96595 -17.42365 -17.17684 -16.46946 -16.31556 -15.61594 -15.24233 -14.67926 -14.46829 -14.30889 -14.19665 -13.71662 -13.46228 -13.22524 -12.98116 -12.77643 -12.66940 -12.31273 -12.26022 -12.19667 -11.98400 -11.85627 -11.78778 -11.69893 -11.54007 -11.50372 -11.22578 -11.21458 -11.17583 -11.07450 -10.61464 -10.49217 -10.47151 -10.23008 -10.17042 -9.80426 -9.61938 -9.42375 -8.89842 -8.64794 -8.13949 -6.13844 -4.14424 1.04224 3.19666 3.29069 3.31914 3.34337 3.72770 4.00765 4.32540 4.39764 4.60519 4.63511 4.76485 4.85329 4.89404 4.98089 5.13361 5.16593 5.20753 5.25308 5.38259 5.43272 5.44164 5.48231 5.53145 5.55399 5.66809 5.77747 5.91608 5.97069 6.00938 6.04032 6.07755 6.11963 6.15795 6.20446 6.21671 6.24214 6.32350 6.36751 6.43528 6.45361 6.54974 6.76644 7.02670 7.26825 7.38860 7.61586 8.45726 8.90825 9.45750 10.99226 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.004706 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.069726 B = 5948.707226 C = 7314.072017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.239 3.761 3 H 0.055 0.945 4 C -0.522 4.522 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.881 3.119 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.264 1.264 12 N -0.983 5.983 13 C 0.110 3.890 14 S 2.781 3.219 15 O -0.990 6.990 16 O -0.970 6.970 17 N -1.103 6.103 18 C 0.098 3.902 19 H 0.135 0.865 20 C -0.184 4.184 21 C -0.154 4.154 22 H 0.106 0.894 23 C -0.056 4.056 24 C -0.109 4.109 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.119 4.119 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.266 0.734 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.410 0.590 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 10.947 -16.838 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.561 4.561 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.711 3.289 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.189 1.189 12 N -0.825 5.825 13 C -0.036 4.036 14 S 2.789 3.211 15 O -0.974 6.974 16 O -0.953 6.953 17 N -0.858 5.858 18 C -0.011 4.011 19 H 0.153 0.847 20 C -0.224 4.224 21 C -0.175 4.175 22 H 0.124 0.876 23 C -0.075 4.075 24 C -0.147 4.147 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.159 4.159 28 C -0.156 4.156 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.242 0.758 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.254 11.029 -16.423 20.747 hybrid contribution -1.077 0.487 -0.144 1.190 sum -7.331 11.516 -16.566 21.466 Atomic orbital electron populations 1.22531 0.99131 1.01630 0.99097 1.19087 0.90351 0.93517 0.83596 0.92698 1.21153 1.32512 1.14305 0.88170 0.89985 1.24902 0.95735 0.96522 0.95702 1.69867 1.45170 1.40123 0.97959 0.86967 0.80490 0.83894 0.77566 1.20401 1.22071 1.18911 1.57421 1.70062 1.20128 1.34870 1.21177 1.01954 0.81546 0.98919 1.01972 0.73396 0.73166 0.72520 1.93570 1.69171 1.59969 1.74686 1.93606 1.73544 1.55810 1.72308 1.55854 1.55990 1.50026 1.23882 1.21369 0.91499 0.90676 0.97554 0.84717 1.23545 0.93301 1.01742 1.03763 1.22876 1.03201 0.90910 1.00482 0.87585 1.20765 0.98508 0.91582 0.96638 1.21532 1.01467 0.94304 0.97349 1.21534 0.98148 0.96494 0.99525 1.21545 0.98034 0.98514 0.97619 1.21542 1.01717 0.95086 0.97525 1.21604 0.97441 0.96409 1.00154 0.92093 0.93263 0.94638 0.92438 0.92759 0.90886 0.93074 0.75764 0.88501 0.88075 0.90922 0.92037 0.92045 0.92072 0.92309 0.92372 0.92122 0.92034 0.91888 0.91059 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 8.65 37.15 0.32 -2.91 16 2 C 0.24 5.39 2.21 -69.09 -0.15 5.23 16 3 H 0.06 1.30 5.86 -51.93 -0.30 1.00 16 4 C -0.52 -14.23 8.95 -34.44 -0.31 -14.54 16 5 H 0.08 2.44 7.89 -52.48 -0.41 2.03 16 6 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.89 -26.74 13.96 55.43 0.77 -25.96 16 8 Si 0.88 21.03 24.37 -169.99 -4.14 16.89 16 9 H -0.28 -6.30 6.87 56.52 0.39 -5.91 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 11 H -0.26 -5.95 6.53 56.52 0.37 -5.58 16 12 N -0.98 -19.33 3.12 -115.87 -0.36 -19.69 16 13 C 0.11 1.90 9.53 59.84 0.57 2.47 16 14 S 2.78 51.89 6.07 -107.50 -0.65 51.24 16 15 O -0.99 -19.98 17.21 -57.17 -0.98 -20.97 16 16 O -0.97 -21.44 16.46 -57.17 -0.94 -22.38 16 17 N -1.10 -15.08 6.10 -4.89 -0.03 -15.11 16 18 C 0.10 1.27 5.50 -67.93 -0.37 0.89 16 19 H 0.14 2.00 7.41 -51.93 -0.38 1.61 16 20 C -0.18 -1.87 10.10 -26.73 -0.27 -2.14 16 21 C -0.15 -1.61 5.07 -90.62 -0.46 -2.07 16 22 H 0.11 1.03 8.11 -51.93 -0.42 0.61 16 23 C -0.06 -0.57 2.34 -90.62 -0.21 -0.78 16 24 C -0.11 -0.93 5.19 -26.73 -0.14 -1.07 16 25 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 26 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 27 C -0.12 -1.25 5.92 -26.75 -0.16 -1.41 16 28 C -0.12 -1.38 5.04 -26.75 -0.13 -1.52 16 29 H 0.06 1.14 6.66 -51.93 -0.35 0.80 16 30 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 31 H 0.03 0.57 7.88 -51.93 -0.41 0.16 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.19 6.43 -51.93 -0.33 0.85 16 35 H 0.05 0.73 7.79 -51.93 -0.40 0.32 16 36 H 0.41 4.49 8.96 -34.47 -0.31 4.18 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 39 H 0.07 0.74 7.90 -51.93 -0.41 0.33 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.99 7.29 -51.93 -0.38 0.61 16 49 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -32.57 384.99 -10.80 -43.37 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -8.53 Total: 4.99 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -1.73 Total: -18.19 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.38 Total: -60.76 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.93 Total: -43.35 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.14 Total: 16.89 kcal Atomic # 16 Polarization: 51.89 SS G_CDS: -0.65 Total: 51.24 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.57 -10.80 -43.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367167285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.869 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds