Wall clock time and date at job start Tue Mar 31 2020 18:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00144 * 2 1 4 4 C 1.53044 * 109.51335 * 185.83239 * 3 2 1 5 5 C 1.53117 * 109.27792 * 300.82256 * 4 3 2 6 6 C 1.53000 * 109.52114 * 177.56078 * 5 4 3 7 7 H 1.09000 * 110.88414 * 297.56914 * 6 5 4 8 8 C 1.55160 * 111.00274 * 61.45678 * 6 5 4 9 9 C 1.54325 * 102.93773 * 153.57731 * 8 6 5 10 10 N 1.47014 * 107.27335 * 337.80214 * 9 8 6 11 11 S 1.65597 * 125.64996 * 178.96521 * 10 9 8 12 12 O 1.42104 * 104.28192 * 206.04783 * 11 10 9 13 13 O 1.42104 * 104.27819 * 333.90525 * 11 10 9 14 14 C 1.81404 * 104.45100 * 89.97652 * 11 10 9 15 15 C 1.52998 * 109.47062 * 180.02562 * 14 11 10 16 16 C 1.50707 * 109.47083 * 180.02562 * 15 14 11 17 17 H 1.07994 * 119.99704 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00060 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00060 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46464 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46833 * 119.99818 * 20 18 16 23 23 H 1.48492 * 109.47174 * 240.00332 * 20 18 16 24 24 C 1.47431 * 108.70616 * 358.94641 * 10 9 8 25 25 C 1.53127 * 109.15989 * 57.65607 * 5 4 3 26 26 C 1.46830 * 110.98168 * 124.21418 * 2 1 3 27 27 H 1.09003 * 109.46681 * 60.00277 * 1 2 3 28 28 H 1.09002 * 109.47278 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47129 * 300.00662 * 1 2 3 30 30 H 1.09002 * 109.46448 * 65.81961 * 3 2 1 31 31 H 1.08994 * 109.45958 * 305.84326 * 3 2 1 32 32 H 1.09001 * 109.49858 * 60.76701 * 4 3 2 33 33 H 1.09002 * 109.49779 * 180.84687 * 4 3 2 34 34 H 1.08998 * 109.52156 * 297.68928 * 5 4 3 35 35 H 1.09003 * 110.71526 * 271.93776 * 8 6 5 36 36 H 1.08994 * 110.71953 * 35.03343 * 8 6 5 37 37 H 1.08996 * 109.88425 * 97.22829 * 9 8 6 38 38 H 1.09003 * 109.87266 * 218.38802 * 9 8 6 39 39 H 1.09000 * 109.46793 * 300.00205 * 14 11 10 40 40 H 1.08994 * 109.47243 * 60.00207 * 14 11 10 41 41 H 1.09000 * 109.47094 * 299.99543 * 15 14 11 42 42 H 1.08994 * 109.47819 * 59.99624 * 15 14 11 43 43 H 0.97005 * 120.00077 * 179.97438 * 19 18 16 44 44 H 1.09004 * 110.36426 * 265.28779 * 24 10 9 45 45 H 1.08995 * 110.36872 * 142.96409 * 24 10 9 46 46 H 1.08997 * 109.50037 * 62.28538 * 25 5 4 47 47 H 1.09000 * 109.49970 * 182.40199 * 25 5 4 48 48 H 1.08995 * 109.46742 * 54.13906 * 26 2 1 49 49 H 1.09004 * 109.45381 * 294.16241 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5183 1.3339 -0.1466 5 6 4.1186 0.5366 1.0146 6 6 5.6359 0.4443 0.8409 7 1 5.8905 -0.0918 -0.0734 8 6 6.2844 1.8537 0.8582 9 6 7.7170 1.5689 1.3564 10 7 7.6813 0.2895 2.0797 11 16 8.9807 -0.4583 2.7830 12 8 8.6322 -1.8359 2.7877 13 8 10.0987 0.0119 2.0424 14 6 9.0178 0.1948 4.4750 15 6 10.1899 -0.4276 5.2363 16 6 10.2203 0.1144 6.6422 17 1 9.4781 0.8314 6.9605 18 6 11.1956 -0.3050 7.5218 19 7 12.0991 -1.1786 7.1341 20 14 11.2337 0.3674 9.2642 21 1 10.1163 1.3279 9.4485 22 1 11.0885 -0.7514 10.2297 23 1 12.5261 1.0597 9.4994 24 6 6.2969 -0.2174 2.0758 25 6 3.5176 -0.8718 1.0210 26 6 1.9948 -0.7709 1.1337 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.7325 1.8609 0.9375 31 1 1.5636 1.9256 -0.8331 32 1 3.7814 0.8564 -1.0905 33 1 3.9101 2.3509 -0.1315 34 1 3.8894 1.0357 1.9561 35 1 6.3026 2.2821 -0.1439 36 1 5.7570 2.5124 1.5481 37 1 8.3970 1.4961 0.5078 38 1 8.0413 2.3648 2.0268 39 1 9.1391 1.2775 4.4439 40 1 8.0840 -0.0519 4.9801 41 1 10.0690 -1.5104 5.2674 42 1 11.1236 -0.1807 4.7310 43 1 12.7855 -1.4734 7.7529 44 1 5.7808 0.0816 2.9882 45 1 6.2905 -1.3026 1.9737 46 1 3.7809 -1.3840 0.0955 47 1 3.9093 -1.4307 1.8710 48 1 1.5627 -1.7715 1.1241 49 1 1.7319 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372887049.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:02 Heat of formation + Delta-G solvation = -87.891625 kcal Electronic energy + Delta-G solvation = -26950.131890 eV Core-core repulsion = 23231.192803 eV Total energy + Delta-G solvation = -3718.939087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.93187 -38.11218 -36.58066 -35.41488 -34.38159 -33.88380 -31.30191 -31.15160 -30.43611 -29.09661 -26.36464 -25.57943 -23.71396 -23.21796 -22.08333 -21.35770 -20.55625 -20.03150 -18.53633 -17.55113 -16.63484 -16.44576 -15.74900 -15.50888 -15.42268 -15.13461 -14.78917 -14.62176 -14.48700 -14.01587 -13.76950 -13.40429 -13.38156 -13.15424 -13.00373 -12.74464 -12.52609 -12.38202 -12.11533 -11.88798 -11.74746 -11.60380 -11.54028 -11.49906 -11.35860 -11.24881 -11.10197 -11.06261 -10.95665 -10.71583 -10.41354 -10.38679 -10.37953 -10.35454 -9.76053 -9.30089 -8.71041 -8.68543 -8.50996 -6.12739 -4.18239 0.75739 3.08234 3.24798 3.31916 3.35422 3.58572 4.16872 4.28320 4.32261 4.39806 4.46645 4.56251 4.63313 4.78528 4.90574 4.93318 5.06330 5.09536 5.12317 5.17935 5.22372 5.24837 5.27178 5.40416 5.47167 5.48818 5.51243 5.52825 5.58084 5.62598 5.66649 5.71968 5.73065 5.80540 5.85802 5.89302 5.97068 6.04694 6.21918 6.26041 6.49773 6.54185 6.70720 6.73522 7.30216 7.36262 7.80461 8.17500 8.85353 9.46461 10.98320 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018745 B = 0.002490 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.411115 B =11244.049119 C =11862.954166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.055 3.945 4 C -0.111 4.111 5 C -0.078 4.078 6 C -0.091 4.091 7 H 0.086 0.914 8 C -0.123 4.123 9 C 0.120 3.880 10 N -1.019 6.019 11 S 2.606 3.394 12 O -0.962 6.962 13 O -0.962 6.962 14 C -0.589 4.589 15 C 0.027 3.973 16 C -0.519 4.519 17 H 0.061 0.939 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.120 3.880 25 C -0.116 4.116 26 C 0.055 3.945 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.207 6.213 -15.180 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.148 4.148 5 C -0.097 4.097 6 C -0.111 4.111 7 H 0.105 0.895 8 C -0.162 4.162 9 C -0.006 4.006 10 N -0.856 5.856 11 S 2.706 3.294 12 O -0.953 6.953 13 O -0.953 6.953 14 C -0.722 4.722 15 C -0.012 4.012 16 C -0.558 4.558 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.006 4.006 25 C -0.154 4.154 26 C -0.073 4.073 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -21.254 5.214 -15.984 27.100 hybrid contribution -0.482 1.161 2.281 2.604 sum -21.736 6.375 -13.703 26.474 Atomic orbital electron populations 1.22350 0.87442 1.02058 1.00516 1.61934 1.07414 1.13899 1.43655 1.22105 0.95862 0.88988 1.00313 1.21640 0.93741 1.00315 0.99142 1.21181 0.93248 0.96314 0.98938 1.22409 0.93741 0.96272 0.98707 0.89542 1.22692 0.94754 0.96939 1.01777 1.21649 0.97767 0.84889 0.96257 1.58876 1.22332 1.34108 1.70273 1.05263 0.72103 0.74260 0.77783 1.93529 1.82855 1.31232 1.87689 1.93532 1.49931 1.82057 1.69772 1.30489 1.10203 1.11829 1.19706 1.18973 0.89669 0.96517 0.96017 1.21035 1.13511 1.25920 0.95362 0.92033 1.25080 0.95364 0.94995 0.99138 1.69969 1.15844 1.31120 1.35901 0.86408 0.78033 0.78844 0.83968 1.19674 1.20784 1.20778 1.22054 0.81107 0.99499 0.97893 1.21702 0.93803 0.96794 1.03097 1.22111 0.95876 0.98111 0.91179 0.91447 0.91389 0.95804 0.94995 0.90904 0.90923 0.91208 0.91027 0.90313 0.90657 0.91187 0.91760 0.86357 0.86349 0.94841 0.94845 0.92579 0.91766 0.89908 0.90768 0.90894 0.90730 0.94915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.59 60.07 0.58 0.73 16 2 N -0.54 -4.19 4.91 -242.97 -1.19 -5.39 16 3 C 0.06 0.38 5.47 -3.83 -0.02 0.36 16 4 C -0.11 -0.74 5.13 -26.65 -0.14 -0.88 16 5 C -0.08 -0.58 1.76 -90.49 -0.16 -0.74 16 6 C -0.09 -0.81 2.56 -88.47 -0.23 -1.03 16 7 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 8 C -0.12 -1.02 5.40 -24.89 -0.13 -1.15 16 9 C 0.12 1.37 6.90 -3.07 -0.02 1.35 16 10 N -1.02 -14.26 3.62 -111.42 -0.40 -14.66 16 11 S 2.61 48.45 5.65 -107.50 -0.61 47.85 16 12 O -0.96 -20.40 17.28 -57.54 -0.99 -21.39 16 13 O -0.96 -20.54 17.60 -57.54 -1.01 -21.55 16 14 C -0.59 -11.55 6.12 37.16 0.23 -11.32 16 15 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 16 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 20 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 C 0.12 1.38 5.78 -2.53 -0.01 1.36 16 25 C -0.12 -0.91 5.19 -26.65 -0.14 -1.04 16 26 C 0.06 0.42 5.46 -3.84 -0.02 0.39 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.41 7.44 -51.93 -0.39 0.02 16 34 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 40 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 41 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.06 0.66 8.00 -51.93 -0.42 0.24 16 45 H 0.08 1.01 7.65 -51.93 -0.40 0.62 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.57 7.60 -51.93 -0.39 0.17 16 48 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 49 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -34.62 393.28 -12.34 -46.96 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -9.15 Total: -3.44 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -0.62 Total: -24.68 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.86 Total: -45.97 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -2.01 Total: -42.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 48.45 SS G_CDS: -0.61 Total: 47.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.62 -12.34 -46.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372887049.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.929 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds