Wall clock time and date at job start Tue Mar 31 2020 16:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47884 * 2 1 4 4 C 1.50695 * 109.46827 * 120.00094 * 2 1 3 5 5 H 1.08006 * 120.00371 * 120.00083 * 4 2 1 6 6 C 1.37881 * 120.00258 * 299.71801 * 4 2 1 7 7 N 1.31519 * 119.99338 * 0.27978 * 6 4 2 8 8 Si 1.86793 * 120.00199 * 180.27555 * 6 4 2 9 9 H 1.48500 * 109.46910 * 90.00556 * 8 6 4 10 10 H 1.48505 * 109.47088 * 209.99997 * 8 6 4 11 11 H 1.48500 * 109.47481 * 330.00288 * 8 6 4 12 12 N 1.46506 * 109.47039 * 239.99700 * 2 1 3 13 13 C 1.46503 * 119.99775 * 300.00477 * 12 2 1 14 14 S 1.65594 * 119.99888 * 120.00193 * 12 2 1 15 15 O 1.42103 * 106.40001 * 203.54190 * 14 12 2 16 16 O 1.42103 * 106.40317 * 336.46307 * 14 12 2 17 17 N 1.65600 * 107.21852 * 90.00489 * 14 12 2 18 18 C 1.47428 * 125.64270 * 275.77319 * 17 14 12 19 19 C 1.55139 * 104.72077 * 155.81714 * 18 17 14 20 20 C 1.55152 * 101.48314 * 37.29350 * 19 18 17 21 21 C 1.47019 * 125.65188 * 96.07684 * 17 14 12 22 22 H 1.09000 * 109.88396 * 300.44047 * 21 17 14 23 23 C 1.52996 * 109.88059 * 61.45380 * 21 17 14 24 24 C 1.54271 * 110.03227 * 176.50367 * 23 21 17 25 25 C 1.54887 * 104.19513 * 217.10349 * 24 23 21 26 26 C 1.54894 * 102.74923 * 37.94411 * 25 24 23 27 27 C 1.53873 * 110.03411 * 59.33889 * 23 21 17 28 28 H 1.09001 * 109.46675 * 300.00721 * 1 2 3 29 29 H 1.09006 * 109.47081 * 59.99894 * 1 2 3 30 30 H 1.08997 * 109.47884 * 179.97438 * 1 2 3 31 31 H 0.96998 * 119.99469 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.47141 * 90.00061 * 13 12 2 33 33 H 1.08999 * 109.46885 * 209.99622 * 13 12 2 34 34 H 1.08997 * 109.47117 * 329.99991 * 13 12 2 35 35 H 1.09000 * 110.36838 * 274.74307 * 18 17 14 36 36 H 1.09002 * 110.36991 * 37.07066 * 18 17 14 37 37 H 1.08999 * 111.18989 * 279.18653 * 19 18 17 38 38 H 1.08999 * 110.93753 * 155.28418 * 19 18 17 39 39 H 1.09005 * 110.72125 * 205.97084 * 20 19 18 40 40 H 1.09001 * 110.72384 * 82.69808 * 20 19 18 41 41 H 1.08997 * 110.01688 * 297.95090 * 23 21 17 42 42 H 1.08994 * 110.48768 * 335.78226 * 24 23 21 43 43 H 1.09004 * 110.48296 * 98.42912 * 24 23 21 44 44 H 1.09004 * 110.75682 * 279.62993 * 25 24 23 45 45 H 1.08997 * 110.75723 * 156.25947 * 25 24 23 46 46 H 1.09002 * 110.48644 * 203.37602 * 26 25 24 47 47 H 1.08997 * 110.59900 * 80.79205 * 26 25 24 48 48 H 1.09000 * 110.03290 * 238.57162 * 27 23 21 49 49 H 1.09000 * 110.03319 * 359.95260 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.7039 -0.2360 2.4827 7 7 0.9479 0.8333 2.6033 8 14 2.3329 -1.1121 4.0079 9 1 3.6423 -0.5355 4.4053 10 1 1.3590 -0.9386 5.1155 11 1 2.4973 -2.5588 3.7154 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0933 -1.4280 14 16 2.9704 0.1140 -2.2862 15 8 2.8227 -0.5648 -3.5259 16 8 2.6904 1.4971 -2.1193 17 7 4.5437 -0.1045 -1.8181 18 6 5.2598 0.6992 -0.8107 19 6 6.3901 -0.2304 -0.2956 20 6 6.8015 -0.9671 -1.5976 21 6 5.4596 -1.1280 -2.3426 22 1 5.0501 -2.1213 -2.1585 23 6 5.6663 -0.9207 -3.8443 24 6 6.6941 -1.9380 -4.3816 25 6 7.4981 -1.1428 -5.4400 26 6 7.6163 0.2609 -4.7957 27 6 6.2527 0.4773 -4.1076 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 0.7166 1.1669 3.4843 32 1 0.7374 -2.1444 -1.9993 33 1 2.4627 -2.5820 -1.9863 34 1 1.5293 -2.5969 -0.4708 35 1 5.6809 1.5941 -1.2688 36 1 4.5898 0.9691 0.0055 37 1 6.0142 -0.9325 0.4486 38 1 7.2211 0.3511 0.1035 39 1 7.2349 -1.9409 -1.3692 40 1 7.4959 -0.3619 -2.1803 41 1 4.7184 -1.0331 -4.3704 42 1 7.3501 -2.2772 -3.5799 43 1 6.1869 -2.7844 -4.8447 44 1 6.9514 -1.0908 -6.3816 45 1 8.4837 -1.5840 -5.5882 46 1 7.7821 1.0192 -5.5610 47 1 8.4215 0.2791 -4.0612 48 1 5.5898 1.0430 -4.7623 49 1 6.3892 1.0085 -3.1656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375697458.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:44 Heat of formation + Delta-G solvation = -87.356694 kcal Electronic energy + Delta-G solvation = -29371.251748 eV Core-core repulsion = 25652.335857 eV Total energy + Delta-G solvation = -3718.915891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.69364 -36.74352 -36.43662 -36.10949 -35.19770 -32.60073 -30.70246 -30.37902 -29.08065 -28.62581 -26.39056 -25.48545 -25.18442 -22.20038 -21.57987 -20.75141 -20.52916 -19.34674 -18.02478 -17.01722 -16.96415 -16.38185 -16.26464 -15.58143 -15.18917 -14.72197 -14.38135 -13.78015 -13.72029 -13.46433 -13.30119 -13.07295 -12.98033 -12.76421 -12.52330 -11.97541 -11.77190 -11.65014 -11.59255 -11.36777 -11.26367 -11.20706 -11.14123 -11.11258 -11.03262 -10.96724 -10.93878 -10.90193 -10.75935 -10.54455 -10.44111 -10.35398 -10.21724 -10.12124 -9.93899 -9.31383 -8.58703 -8.49485 -7.93809 -6.10809 -4.19327 1.24036 3.22289 3.30276 3.31703 3.52533 4.11875 4.33627 4.57473 4.60874 4.68213 4.77731 4.85941 5.11293 5.15945 5.19683 5.40181 5.44854 5.46846 5.57734 5.62375 5.63929 5.67485 5.77080 5.84011 5.88147 5.90651 5.97202 6.02236 6.06069 6.17839 6.18840 6.22339 6.27677 6.33295 6.34072 6.44130 6.56342 6.64368 6.66872 6.79031 6.88548 6.93114 7.11937 7.50764 7.61872 7.77177 8.04183 8.25192 8.84086 9.46959 10.94199 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.004672 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.391362 B = 5991.495497 C = 6731.110657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.057 0.943 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.991 5.991 13 C 0.109 3.891 14 S 2.793 3.207 15 O -0.992 6.992 16 O -0.979 6.979 17 N -1.011 6.011 18 C 0.124 3.876 19 C -0.129 4.129 20 C -0.125 4.125 21 C 0.164 3.836 22 H 0.069 0.931 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.125 4.125 28 H 0.092 0.908 29 H 0.011 0.989 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.577 -4.459 -9.657 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.804 3.196 15 O -0.977 6.977 16 O -0.963 6.963 17 N -0.849 5.849 18 C -0.002 4.002 19 C -0.168 4.168 20 C -0.164 4.164 21 C 0.058 3.942 22 H 0.087 0.913 23 C -0.143 4.143 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.160 4.160 27 C -0.162 4.162 28 H 0.111 0.889 29 H 0.030 0.970 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.069 -3.808 -10.290 16.310 hybrid contribution 0.299 -0.689 1.306 1.507 sum 12.368 -4.497 -8.983 15.934 Atomic orbital electron populations 1.22051 0.98013 0.99639 1.00702 1.18724 0.91883 0.92637 0.80356 0.92545 1.21365 1.31871 1.13020 0.90101 0.91930 1.24924 0.94966 0.94965 0.98944 1.69887 1.36200 1.22580 1.23793 0.86545 0.78622 0.79919 0.82561 1.20636 1.21225 1.19975 1.57809 1.64152 1.21392 1.39936 1.21152 0.98806 0.82101 1.01705 1.01499 0.71647 0.73421 0.73020 1.93494 1.85811 1.76304 1.42061 1.93575 1.83628 1.32337 1.86806 1.59183 1.28251 1.43933 1.53526 1.21974 0.94378 0.93090 0.90714 1.22802 0.97881 0.98867 0.97232 1.22746 0.96293 1.01005 0.96334 1.21238 0.89896 0.90987 0.92125 0.91327 1.22523 1.00919 0.95055 0.95833 1.22394 0.97218 0.97579 0.98245 1.22478 0.99613 0.95615 0.98425 1.22370 0.97452 0.96909 0.99295 1.22252 0.96049 0.97014 1.00897 0.88922 0.96970 0.94875 0.92646 0.93996 0.93350 0.90304 0.92157 0.89649 0.90272 0.90666 0.90850 0.90315 0.88164 0.91259 0.91736 0.91667 0.91924 0.92127 0.91800 0.92301 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.97 37.16 0.33 -3.15 16 2 C 0.27 6.54 2.62 -69.08 -0.18 6.36 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.52 -13.24 7.98 -34.44 -0.27 -13.52 16 5 H 0.06 1.55 7.33 -52.48 -0.38 1.16 16 6 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 7 N -0.89 -24.10 11.33 55.43 0.63 -23.47 16 8 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 N -0.99 -20.97 3.12 -115.85 -0.36 -21.33 16 13 C 0.11 1.99 9.28 59.85 0.56 2.55 16 14 S 2.79 56.67 6.23 -107.50 -0.67 56.00 16 15 O -0.99 -20.32 14.45 -57.17 -0.83 -21.14 16 16 O -0.98 -23.09 16.37 -57.17 -0.94 -24.02 16 17 N -1.01 -16.86 2.97 -104.28 -0.31 -17.17 16 18 C 0.12 1.92 6.49 -2.40 -0.02 1.91 16 19 C -0.13 -1.60 7.10 -24.46 -0.17 -1.78 16 20 C -0.13 -1.39 4.70 -24.90 -0.12 -1.50 16 21 C 0.16 2.25 2.83 -66.96 -0.19 2.06 16 22 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 23 C -0.12 -1.63 2.66 -89.50 -0.24 -1.87 16 24 C -0.12 -1.21 6.17 -25.07 -0.15 -1.36 16 25 C -0.12 -1.17 6.91 -24.74 -0.17 -1.34 16 26 C -0.12 -1.22 6.54 -25.07 -0.16 -1.38 16 27 C -0.12 -1.57 5.41 -25.62 -0.14 -1.71 16 28 H 0.09 2.41 6.08 -51.93 -0.32 2.10 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 34 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 35 H 0.06 0.86 7.35 -51.93 -0.38 0.48 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.70 7.99 -51.93 -0.42 0.29 16 40 H 0.08 0.80 5.59 -51.93 -0.29 0.51 16 41 H 0.10 1.58 5.92 -51.93 -0.31 1.28 16 42 H 0.07 0.64 6.63 -51.93 -0.34 0.30 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.58 7.56 -51.93 -0.39 0.18 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.07 0.94 5.12 -51.93 -0.27 0.67 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -29.63 375.14 -11.28 -40.90 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.41 Total: 2.67 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -1.02 Total: -13.15 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.04 Total: -61.97 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.76 Total: -45.17 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 56.67 SS G_CDS: -0.67 Total: 56.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.63 -11.28 -40.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375697458.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.455 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds