Wall clock time and date at job start Tue Mar 31 2020 16:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47884 * 2 1 4 4 C 1.50695 * 109.46827 * 120.00094 * 2 1 3 5 5 H 1.08006 * 120.00371 * 120.00083 * 4 2 1 6 6 C 1.37881 * 120.00258 * 299.71801 * 4 2 1 7 7 N 1.31519 * 119.99338 * 0.27978 * 6 4 2 8 8 Si 1.86793 * 120.00199 * 180.27555 * 6 4 2 9 9 H 1.48500 * 109.46910 * 90.00556 * 8 6 4 10 10 H 1.48505 * 109.47088 * 209.99997 * 8 6 4 11 11 H 1.48500 * 109.47481 * 330.00288 * 8 6 4 12 12 N 1.46506 * 109.47039 * 239.99700 * 2 1 3 13 13 C 1.46503 * 119.99775 * 300.00477 * 12 2 1 14 14 S 1.65594 * 119.99888 * 120.00193 * 12 2 1 15 15 O 1.42103 * 106.40001 * 203.54190 * 14 12 2 16 16 O 1.42103 * 106.40317 * 336.46307 * 14 12 2 17 17 N 1.65600 * 107.21852 * 90.00489 * 14 12 2 18 18 C 1.47428 * 125.64270 * 275.77319 * 17 14 12 19 19 C 1.55139 * 104.72077 * 155.81714 * 18 17 14 20 20 C 1.55152 * 101.48314 * 37.29350 * 19 18 17 21 21 C 1.47019 * 125.65188 * 96.07684 * 17 14 12 22 22 H 1.09000 * 109.88396 * 300.44047 * 21 17 14 23 23 C 1.52996 * 109.88059 * 61.45380 * 21 17 14 24 24 C 1.54271 * 110.03227 * 176.50367 * 23 21 17 25 25 C 1.54887 * 104.19513 * 217.10349 * 24 23 21 26 26 C 1.54894 * 102.74923 * 37.94411 * 25 24 23 27 27 C 1.53873 * 110.03411 * 59.33889 * 23 21 17 28 28 H 1.09001 * 109.46675 * 300.00721 * 1 2 3 29 29 H 1.09006 * 109.47081 * 59.99894 * 1 2 3 30 30 H 1.08997 * 109.47884 * 179.97438 * 1 2 3 31 31 H 0.96998 * 119.99469 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.47141 * 90.00061 * 13 12 2 33 33 H 1.08999 * 109.46885 * 209.99622 * 13 12 2 34 34 H 1.08997 * 109.47117 * 329.99991 * 13 12 2 35 35 H 1.09000 * 110.36838 * 274.74307 * 18 17 14 36 36 H 1.09002 * 110.36991 * 37.07066 * 18 17 14 37 37 H 1.08999 * 111.18989 * 279.18653 * 19 18 17 38 38 H 1.08999 * 110.93753 * 155.28418 * 19 18 17 39 39 H 1.09005 * 110.72125 * 205.97084 * 20 19 18 40 40 H 1.09001 * 110.72384 * 82.69808 * 20 19 18 41 41 H 1.08997 * 110.01688 * 297.95090 * 23 21 17 42 42 H 1.08994 * 110.48768 * 335.78226 * 24 23 21 43 43 H 1.09004 * 110.48296 * 98.42912 * 24 23 21 44 44 H 1.09004 * 110.75682 * 279.62993 * 25 24 23 45 45 H 1.08997 * 110.75723 * 156.25947 * 25 24 23 46 46 H 1.09002 * 110.48644 * 203.37602 * 26 25 24 47 47 H 1.08997 * 110.59900 * 80.79205 * 26 25 24 48 48 H 1.09000 * 110.03290 * 238.57162 * 27 23 21 49 49 H 1.09000 * 110.03319 * 359.95260 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.7039 -0.2360 2.4827 7 7 0.9479 0.8333 2.6033 8 14 2.3329 -1.1121 4.0079 9 1 3.6423 -0.5355 4.4053 10 1 1.3590 -0.9386 5.1155 11 1 2.4973 -2.5588 3.7154 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0933 -1.4280 14 16 2.9704 0.1140 -2.2862 15 8 2.8227 -0.5648 -3.5259 16 8 2.6904 1.4971 -2.1193 17 7 4.5437 -0.1045 -1.8181 18 6 5.2598 0.6992 -0.8107 19 6 6.3901 -0.2304 -0.2956 20 6 6.8015 -0.9671 -1.5976 21 6 5.4596 -1.1280 -2.3426 22 1 5.0501 -2.1213 -2.1585 23 6 5.6663 -0.9207 -3.8443 24 6 6.6941 -1.9380 -4.3816 25 6 7.4981 -1.1428 -5.4400 26 6 7.6163 0.2609 -4.7957 27 6 6.2527 0.4773 -4.1076 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 0.7166 1.1669 3.4843 32 1 0.7374 -2.1444 -1.9993 33 1 2.4627 -2.5820 -1.9863 34 1 1.5293 -2.5969 -0.4708 35 1 5.6809 1.5941 -1.2688 36 1 4.5898 0.9691 0.0055 37 1 6.0142 -0.9325 0.4486 38 1 7.2211 0.3511 0.1035 39 1 7.2349 -1.9409 -1.3692 40 1 7.4959 -0.3619 -2.1803 41 1 4.7184 -1.0331 -4.3704 42 1 7.3501 -2.2772 -3.5799 43 1 6.1869 -2.7844 -4.8447 44 1 6.9514 -1.0908 -6.3816 45 1 8.4837 -1.5840 -5.5882 46 1 7.7821 1.0192 -5.5610 47 1 8.4215 0.2791 -4.0612 48 1 5.5898 1.0430 -4.7623 49 1 6.3892 1.0085 -3.1656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375697458.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:43 Heat of formation + Delta-G solvation = -104.889187 kcal Electronic energy + Delta-G solvation = -29372.012014 eV Core-core repulsion = 25652.335857 eV Total energy + Delta-G solvation = -3719.676157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.72950 -38.39451 -37.90130 -37.49969 -36.91253 -34.51677 -31.83292 -31.40753 -30.96096 -29.48758 -27.40289 -27.27588 -27.02649 -23.39460 -22.63296 -22.49319 -21.42119 -20.48727 -19.52908 -18.61726 -18.43415 -18.17744 -17.47433 -17.00597 -16.48460 -16.32463 -15.50531 -15.30319 -15.00588 -14.74692 -14.70915 -14.44173 -14.19721 -14.11263 -13.78534 -13.60457 -13.46470 -13.24794 -13.18651 -12.99814 -12.77795 -12.71737 -12.68756 -12.52007 -12.20990 -12.15827 -12.11167 -11.99351 -11.92285 -11.92052 -11.84402 -11.73266 -11.36686 -11.32532 -11.22172 -11.01153 -10.50295 -9.92228 -9.65222 -8.09076 -6.24396 -0.36089 1.45763 1.47492 1.56762 1.99529 2.45573 2.55513 3.19304 3.24979 3.62294 3.71719 3.74294 3.90417 4.05118 4.06427 4.21811 4.40463 4.42676 4.57178 4.61044 4.65040 4.67527 4.73426 4.81387 4.86904 4.89976 4.91994 4.93784 4.95016 5.02002 5.05637 5.09611 5.13202 5.16029 5.19290 5.21437 5.26565 5.33342 5.35330 5.51111 5.51607 5.57902 5.60503 5.64111 5.72920 5.85714 6.08785 6.27285 6.84397 7.45358 8.95835 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017201 B = 0.004672 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.391362 B = 5991.495497 C = 6731.110657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.020 0.980 4 C -0.526 4.526 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.265 1.265 12 N -0.999 5.999 13 C 0.104 3.896 14 S 2.802 3.198 15 O -0.997 6.997 16 O -1.020 7.020 17 N -1.009 6.009 18 C 0.115 3.885 19 C -0.120 4.120 20 C -0.112 4.112 21 C 0.154 3.846 22 H 0.070 0.930 23 C -0.126 4.126 24 C -0.111 4.111 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.130 4.130 28 H 0.071 0.929 29 H 0.015 0.985 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.035 0.965 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.586 -6.571 -9.628 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.169 3.831 3 H 0.037 0.963 4 C -0.565 4.565 5 H 0.086 0.914 6 C -0.182 4.182 7 N -0.558 5.558 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.189 1.189 12 N -0.840 5.840 13 C -0.042 4.042 14 S 2.814 3.186 15 O -0.982 6.982 16 O -1.005 7.005 17 N -0.850 5.850 18 C -0.010 4.010 19 C -0.159 4.159 20 C -0.151 4.151 21 C 0.048 3.952 22 H 0.088 0.912 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.158 4.158 26 C -0.154 4.154 27 C -0.167 4.167 28 H 0.090 0.910 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.054 0.946 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.071 -5.944 -10.287 19.191 hybrid contribution -0.650 -0.001 1.223 1.385 sum 14.421 -5.944 -9.064 18.041 Atomic orbital electron populations 1.21950 0.98031 1.00047 0.99810 1.18395 0.91864 0.91197 0.81652 0.96251 1.21547 1.31588 1.12944 0.90414 0.91357 1.25698 0.95133 0.95552 1.01846 1.70029 1.37434 1.24018 1.24335 0.85527 0.77958 0.79193 0.78749 1.20065 1.21504 1.18919 1.57740 1.65025 1.22458 1.38782 1.21331 1.00158 0.80581 1.02108 1.00972 0.72380 0.72454 0.72793 1.93486 1.86372 1.76075 1.42218 1.93515 1.84745 1.34906 1.87298 1.58900 1.27247 1.44946 1.53862 1.22126 0.94744 0.94440 0.89655 1.22780 0.97171 0.98275 0.97689 1.22758 0.94744 1.02573 0.94981 1.21591 0.90765 0.90008 0.92835 0.91174 1.22487 1.00455 0.96485 0.95158 1.22400 0.96691 0.96793 0.99046 1.22485 1.00534 0.95117 0.97705 1.22362 0.95970 0.97447 0.99657 1.22284 0.97465 0.96397 1.00579 0.91032 0.96637 0.93672 0.92744 0.93192 0.91040 0.90437 0.91180 0.93046 0.91199 0.87987 0.88107 0.88735 0.91449 0.89260 0.91642 0.92360 0.89606 0.91663 0.89972 0.94558 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.88 8.97 71.98 0.65 -6.23 16 2 C 0.27 13.81 2.62 44.24 0.12 13.92 16 3 H 0.02 1.13 6.91 -2.39 -0.02 1.12 16 4 C -0.53 -26.80 7.98 25.60 0.20 -26.59 16 5 H 0.07 3.34 7.33 -2.91 -0.02 3.32 16 6 C 0.02 0.90 5.31 84.65 0.45 1.35 16 7 N -0.92 -51.17 11.33 21.45 0.24 -50.92 16 8 Si 0.96 40.94 29.54 68.60 2.03 42.96 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 12 N -1.00 -43.01 3.12 -520.44 -1.62 -44.64 16 13 C 0.10 3.73 9.28 127.77 1.19 4.92 16 14 S 2.80 117.14 6.23 -56.49 -0.35 116.78 16 15 O -1.00 -41.60 14.45 -128.00 -1.85 -43.45 16 16 O -1.02 -50.71 16.37 -128.00 -2.10 -52.80 16 17 N -1.01 -33.71 2.97 -483.85 -1.44 -35.15 16 18 C 0.12 3.59 6.49 86.94 0.56 4.15 16 19 C -0.12 -2.69 7.10 32.07 0.23 -2.47 16 20 C -0.11 -2.08 4.70 31.78 0.15 -1.93 16 21 C 0.15 3.95 2.83 45.34 0.13 4.08 16 22 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 23 C -0.13 -3.16 2.66 -10.07 -0.03 -3.19 16 24 C -0.11 -1.98 6.17 31.67 0.20 -1.79 16 25 C -0.12 -1.90 6.91 31.89 0.22 -1.68 16 26 C -0.12 -2.00 6.54 31.67 0.21 -1.79 16 27 C -0.13 -3.14 5.41 31.32 0.17 -2.97 16 28 H 0.07 3.86 6.08 -2.39 -0.01 3.84 16 29 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.04 2.06 7.67 -2.39 -0.02 2.04 16 31 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.07 2.20 7.79 -2.39 -0.02 2.18 16 34 H 0.08 2.80 7.02 -2.39 -0.02 2.78 16 35 H 0.07 2.00 7.35 -2.39 -0.02 1.99 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.10 1.41 7.99 -2.38 -0.02 1.39 16 40 H 0.09 1.50 5.59 -2.39 -0.01 1.49 16 41 H 0.07 2.14 5.92 -2.39 -0.01 2.13 16 42 H 0.09 1.25 6.63 -2.39 -0.02 1.23 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 45 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.08 1.13 7.56 -2.39 -0.02 1.11 16 48 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.07 1.69 5.12 -2.39 -0.01 1.68 16 Total: -1.00 -66.06 375.14 0.27 -65.79 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.92 Total: 21.64 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 4.44 Total: -20.22 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -2.82 Total: -130.71 kcal Atomic # 8 Polarization: -92.30 SS G_CDS: -3.94 Total: -96.25 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 117.14 SS G_CDS: -0.35 Total: 116.78 kcal Total: -66.06 0.27 -65.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375697458.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.100 kcal (2) G-P(sol) polarization free energy of solvation -66.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds