Wall clock time and date at job start Tue Mar 31 2020 16:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46751 * 2 1 4 4 C 1.50691 * 109.47058 * 240.00039 * 2 1 3 5 5 H 1.08006 * 120.00215 * 239.99718 * 4 2 1 6 6 C 1.37886 * 120.00189 * 60.00045 * 4 2 1 7 7 N 1.31512 * 119.99560 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00052 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47105 * 60.00088 * 8 6 4 10 10 H 1.48497 * 109.47301 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47314 * 300.00180 * 8 6 4 12 12 N 1.46500 * 109.47090 * 119.99751 * 2 1 3 13 13 C 1.46500 * 119.99852 * 60.00236 * 12 2 1 14 14 S 1.65599 * 120.00134 * 239.99893 * 12 2 1 15 15 O 1.42094 * 106.40256 * 336.46392 * 14 12 2 16 16 O 1.42102 * 106.40191 * 203.54214 * 14 12 2 17 17 N 1.65602 * 107.21520 * 90.00465 * 14 12 2 18 18 C 1.47425 * 125.64836 * 269.95418 * 17 14 12 19 19 C 1.54904 * 104.83456 * 204.16865 * 18 17 14 20 20 C 1.55403 * 101.66582 * 323.07437 * 19 18 17 21 21 C 1.47021 * 125.65051 * 90.00033 * 17 14 12 22 22 H 1.09006 * 109.88331 * 59.32908 * 21 17 14 23 23 C 1.53000 * 109.88358 * 298.32007 * 21 17 14 24 24 C 1.54884 * 110.48609 * 182.13164 * 23 21 17 25 25 C 1.54896 * 102.91498 * 156.52794 * 24 23 21 26 26 C 1.54468 * 104.09920 * 322.30578 * 25 24 23 27 27 C 1.53872 * 106.68637 * 23.33590 * 26 25 24 28 28 H 1.09005 * 109.47229 * 299.99867 * 1 2 3 29 29 H 1.08997 * 109.47225 * 60.00076 * 1 2 3 30 30 H 1.08999 * 109.47222 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99594 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47377 * 270.00206 * 13 12 2 33 33 H 1.09008 * 109.47131 * 30.00065 * 13 12 2 34 34 H 1.08999 * 109.47199 * 149.99917 * 13 12 2 35 35 H 1.09006 * 110.36907 * 323.00799 * 18 17 14 36 36 H 1.09005 * 110.36642 * 85.21970 * 18 17 14 37 37 H 1.08994 * 111.00588 * 81.06652 * 19 18 17 38 38 H 1.08998 * 111.00482 * 204.87945 * 19 18 17 39 39 H 1.08996 * 110.69567 * 277.05175 * 20 19 18 40 40 H 1.09001 * 110.85482 * 153.70125 * 20 19 18 41 41 H 1.09004 * 110.43270 * 59.58833 * 23 21 17 42 42 H 1.09003 * 110.76067 * 274.93488 * 24 23 21 43 43 H 1.08997 * 110.75803 * 38.12176 * 24 23 21 44 44 H 1.09006 * 110.48062 * 80.82858 * 25 24 23 45 45 H 1.08993 * 110.48764 * 203.47113 * 25 24 23 46 46 H 1.09005 * 109.85138 * 264.10071 * 26 25 24 47 47 H 1.08994 * 110.16308 * 142.74790 * 26 25 24 48 48 H 1.08997 * 110.03645 * 240.87595 * 27 26 25 49 49 H 1.09009 * 110.07239 * 119.46773 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3224 -1.1195 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8269 -0.4199 -5.2204 11 1 3.8074 -1.1189 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.5793 1.1830 1.5749 16 8 3.7118 -0.8789 2.9814 17 7 1.9606 0.8090 3.3998 18 6 1.3740 2.1581 3.3039 19 6 1.0658 2.5616 4.7673 20 6 0.6062 1.2077 5.3764 21 6 1.5015 0.1830 4.6483 22 1 2.3582 -0.0705 5.2728 23 6 0.6966 -1.0792 4.3322 24 6 0.1605 -1.7209 5.6360 25 6 -1.0586 -2.5394 5.1431 26 6 -1.6897 -1.6518 4.0477 27 6 -0.5752 -0.7230 3.5351 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7089 1.1614 -3.4843 32 1 0.7375 -2.1444 1.9993 33 1 1.5295 -2.5969 0.4708 34 1 2.4629 -2.5818 1.9864 35 1 2.0888 2.8521 2.8615 36 1 0.4572 2.1321 2.7147 37 1 1.9614 2.9290 5.2682 38 1 0.2663 3.3013 4.8086 39 1 -0.4458 1.0245 5.1581 40 1 0.7880 1.1840 6.4509 41 1 1.3084 -1.7922 3.7796 42 1 0.9103 -2.3749 6.0814 43 1 -0.1505 -0.9535 6.3448 44 1 -0.7340 -3.4906 4.7211 45 1 -1.7630 -2.7033 5.9585 46 1 -2.5020 -1.0615 4.4720 47 1 -2.0645 -2.2706 3.2324 48 1 -0.8465 0.3180 3.7105 49 1 -0.4082 -0.8908 2.4711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375697463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:00 Heat of formation + Delta-G solvation = -82.371148 kcal Electronic energy + Delta-G solvation = -29853.176346 eV Core-core repulsion = 26134.476644 eV Total energy + Delta-G solvation = -3718.699701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -39.69660 -36.82111 -36.56164 -36.04080 -35.17382 -32.56724 -30.78779 -30.54348 -29.07065 -28.63153 -26.43454 -25.41874 -25.15986 -22.39580 -21.75701 -20.64922 -20.42489 -19.43018 -17.91731 -17.30689 -16.77747 -16.55586 -16.10134 -15.62157 -15.30136 -14.64090 -14.39275 -13.91234 -13.79282 -13.57318 -13.36932 -13.16016 -12.86864 -12.62179 -12.57786 -11.96311 -11.82091 -11.70231 -11.49794 -11.40998 -11.32134 -11.22415 -11.21853 -11.14909 -11.01938 -10.96467 -10.85788 -10.80093 -10.72839 -10.55293 -10.44692 -10.33055 -10.19974 -10.04426 -9.95589 -9.24329 -8.68748 -8.42881 -7.92284 -6.06112 -4.12327 1.21070 3.30762 3.35141 3.38448 3.52028 4.12902 4.40804 4.48507 4.60505 4.62189 4.72540 4.84677 5.00963 5.12422 5.25589 5.35243 5.42832 5.46098 5.50603 5.61246 5.63384 5.70709 5.75075 5.78502 5.82063 5.88189 5.91344 5.94172 6.02698 6.06756 6.10679 6.19337 6.26173 6.28851 6.32322 6.48679 6.50824 6.57606 6.66447 6.74851 6.86367 6.87074 7.06651 7.50848 7.64922 7.81524 8.07128 8.29757 8.89297 9.53093 10.99448 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015143 B = 0.005001 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.631230 B = 5597.146077 C = 6172.066842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.271 3.729 3 H 0.056 0.944 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.985 5.985 13 C 0.088 3.912 14 S 2.790 3.210 15 O -0.973 6.973 16 O -0.994 6.994 17 N -1.016 6.016 18 C 0.118 3.882 19 C -0.129 4.129 20 C -0.127 4.127 21 C 0.161 3.839 22 H 0.074 0.926 23 C -0.119 4.119 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.132 4.132 28 H 0.012 0.988 29 H 0.090 0.910 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 -1.085 16.903 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.168 3.832 3 H 0.074 0.926 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.828 5.828 13 C -0.058 4.058 14 S 2.801 3.199 15 O -0.957 6.957 16 O -0.978 6.978 17 N -0.853 5.853 18 C -0.008 4.008 19 C -0.168 4.168 20 C -0.166 4.166 21 C 0.055 3.945 22 H 0.092 0.908 23 C -0.139 4.139 24 C -0.153 4.153 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.169 4.169 28 H 0.031 0.969 29 H 0.109 0.891 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.081 -0.933 16.667 17.449 hybrid contribution -0.141 -0.540 -1.004 1.149 sum -5.222 -1.473 15.663 16.576 Atomic orbital electron populations 1.22124 0.98235 0.99614 1.00462 1.18677 0.91267 0.92875 0.80426 0.92598 1.21302 1.31572 1.12989 0.90109 0.92051 1.24891 0.94968 0.95002 0.98929 1.69848 1.36534 1.22656 1.23820 0.86573 0.79357 0.79567 0.81984 1.20283 1.21239 1.20192 1.57699 1.69936 1.19647 1.35478 1.21505 0.99104 0.82513 1.02669 1.01603 0.73433 0.72894 0.71995 1.93587 1.73900 1.56185 1.72043 1.93510 1.69278 1.60309 1.74721 1.59377 1.66520 1.25057 1.34387 1.21961 0.98656 0.83029 0.97114 1.22791 1.01485 0.97058 0.95425 1.22850 1.00337 0.94068 0.99331 1.21181 0.96078 0.92208 0.85044 0.90816 1.22645 0.97185 0.96864 0.97198 1.22498 0.97249 0.98940 0.96629 1.22372 0.97060 0.98627 0.98022 1.22154 0.97991 0.97859 0.98057 1.22486 0.93424 0.99675 1.01343 0.96910 0.89107 0.94946 0.92694 0.93519 0.89952 0.92170 0.90253 0.91494 0.90975 0.90345 0.89770 0.90750 0.89884 0.91686 0.91217 0.91744 0.92058 0.92389 0.92015 0.91107 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.26 37.16 0.31 -2.89 16 2 C 0.27 6.54 2.62 -69.09 -0.18 6.35 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.52 -13.93 7.99 -34.44 -0.28 -14.21 16 5 H 0.06 1.64 7.33 -52.48 -0.38 1.25 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.99 -20.44 3.12 -115.85 -0.36 -20.80 16 13 C 0.09 1.59 8.03 59.85 0.48 2.07 16 14 S 2.79 56.92 5.93 -107.50 -0.64 56.28 16 15 O -0.97 -23.46 16.02 -57.17 -0.92 -24.38 16 16 O -0.99 -21.25 16.21 -57.17 -0.93 -22.17 16 17 N -1.02 -16.00 3.19 -104.41 -0.33 -16.33 16 18 C 0.12 1.63 7.11 -2.53 -0.02 1.61 16 19 C -0.13 -1.30 7.09 -24.45 -0.17 -1.48 16 20 C -0.13 -1.24 4.79 -24.76 -0.12 -1.36 16 21 C 0.16 2.07 2.71 -66.95 -0.18 1.89 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 23 C -0.12 -1.48 2.46 -88.96 -0.22 -1.70 16 24 C -0.12 -1.14 6.22 -24.74 -0.15 -1.29 16 25 C -0.12 -1.18 6.85 -24.96 -0.17 -1.35 16 26 C -0.12 -1.30 6.81 -25.51 -0.17 -1.47 16 27 C -0.13 -1.64 5.32 -25.62 -0.14 -1.77 16 28 H 0.01 0.24 7.33 -51.93 -0.38 -0.15 16 29 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 30 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 31 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.05 0.73 4.41 -51.93 -0.23 0.50 16 33 H 0.08 1.55 7.02 -51.92 -0.36 1.19 16 34 H 0.06 1.04 6.97 -51.93 -0.36 0.68 16 35 H 0.08 1.17 7.78 -51.93 -0.40 0.77 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.78 5.67 -51.93 -0.29 0.49 16 40 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 41 H 0.08 1.19 5.29 -51.93 -0.27 0.91 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.60 6.89 -51.93 -0.36 0.24 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.85 5.67 -51.93 -0.29 0.55 16 49 H 0.08 1.23 4.49 -51.92 -0.23 1.00 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -30.95 367.44 -11.15 -42.11 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.01 Total: 1.58 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.11 Total: -13.95 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.07 Total: -61.14 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -1.84 Total: -46.55 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 56.92 SS G_CDS: -0.64 Total: 56.28 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.95 -11.15 -42.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375697463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.263 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds