Wall clock time and date at job start Tue Mar 31 2020 18:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46494 * 120.00306 * 2 1 4 4 C 1.50701 * 109.47338 * 275.00106 * 3 2 1 5 5 H 1.08001 * 119.99509 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00351 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99980 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00033 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.46990 * 59.99794 * 8 6 4 10 10 H 1.48498 * 109.47196 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47463 * 299.99679 * 8 6 4 12 12 S 1.65606 * 119.99908 * 179.97438 * 2 1 3 13 13 O 1.42095 * 106.40087 * 156.46026 * 12 2 1 14 14 O 1.42105 * 106.39893 * 23.53965 * 12 2 1 15 15 N 1.65597 * 107.21700 * 270.00393 * 12 2 1 16 16 C 1.46496 * 120.00443 * 65.00001 * 15 12 2 17 17 H 1.09000 * 109.47157 * 24.99253 * 16 15 12 18 18 C 1.53002 * 109.47030 * 265.00053 * 16 15 12 19 19 C 1.52997 * 109.47092 * 299.99704 * 18 16 15 20 20 C 1.53006 * 109.47445 * 300.00075 * 19 18 16 21 21 H 1.09002 * 109.46589 * 300.00331 * 20 19 18 22 22 C 1.52997 * 109.47445 * 180.02562 * 20 19 18 23 23 C 1.53002 * 109.46978 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47128 * 59.99726 * 23 22 20 25 25 C 1.52992 * 109.47106 * 300.00123 * 24 23 22 26 26 C 1.52997 * 109.47482 * 60.00162 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99783 * 26 25 24 28 28 C 1.53000 * 109.47060 * 180.02562 * 26 25 24 29 29 H 1.08997 * 109.47390 * 270.00456 * 1 2 3 30 30 H 1.09005 * 109.47222 * 30.00244 * 1 2 3 31 31 H 1.08994 * 109.47652 * 150.00114 * 1 2 3 32 32 H 1.09001 * 109.47161 * 35.00102 * 3 2 1 33 33 H 1.09001 * 109.47288 * 154.99745 * 3 2 1 34 34 H 0.96991 * 119.99940 * 180.02562 * 7 6 4 35 35 H 0.97008 * 119.99629 * 244.99901 * 15 12 2 36 36 H 1.09002 * 109.47067 * 179.97438 * 18 16 15 37 37 H 1.09000 * 109.47312 * 59.99824 * 18 16 15 38 38 H 1.09001 * 109.47375 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.47497 * 59.99850 * 19 18 16 40 40 H 1.09002 * 109.47045 * 300.00058 * 22 20 19 41 41 H 1.08998 * 109.47171 * 59.99399 * 22 20 19 42 42 H 1.08996 * 109.46698 * 179.97438 * 23 22 20 43 43 H 1.09002 * 109.46838 * 299.99316 * 23 22 20 44 44 H 1.09002 * 109.47070 * 60.00059 * 24 23 22 45 45 H 1.08996 * 109.46550 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47103 * 299.99915 * 25 24 23 47 47 H 1.08998 * 109.46862 * 180.02562 * 25 24 23 48 48 H 1.09001 * 109.47194 * 299.99650 * 28 26 25 49 49 H 1.08992 * 109.47399 * 59.99823 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9289 1.1934 -2.2332 6 6 3.0007 2.9503 -1.6665 7 7 3.5036 3.6468 -0.6706 8 14 3.1797 3.5659 -3.4210 9 1 1.8335 3.7720 -4.0130 10 1 3.9222 4.8519 -3.4210 11 1 3.9253 2.5634 -4.2237 12 16 2.2930 -1.4342 0.0006 13 8 3.5758 -1.1571 -0.5439 14 8 1.4112 -2.4068 -0.5434 15 7 2.5379 -1.8580 1.5826 16 6 1.3945 -2.1768 2.4411 17 1 0.5610 -2.5150 1.8254 18 6 0.9785 -0.9280 3.2210 19 6 2.1484 -0.4532 4.0853 20 6 2.5401 -1.5602 5.0662 21 1 1.6892 -1.7973 5.7049 22 6 3.7095 -1.0852 5.9309 23 6 4.1015 -2.1924 6.9113 24 6 4.5182 -3.4407 6.1309 25 6 3.3488 -3.9156 5.2662 26 6 2.9568 -2.8085 4.2858 27 1 3.8076 -2.5706 3.6473 28 6 1.7869 -3.2833 3.4216 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6502 2.0042 0.5895 33 1 3.1858 1.1176 0.4344 34 1 3.9670 4.4803 -0.8472 35 1 3.4387 -1.8952 1.9408 36 1 0.1275 -1.1650 3.8595 37 1 0.6995 -0.1393 2.5222 38 1 1.8519 0.4362 4.6413 39 1 2.9992 -0.2161 3.4466 40 1 4.5604 -0.8477 5.2924 41 1 3.4128 -0.1956 6.4864 42 1 4.9349 -1.8542 7.5270 43 1 3.2507 -2.4303 7.5498 44 1 5.3690 -3.2028 5.4924 45 1 4.7979 -4.2293 6.8294 46 1 2.4980 -4.1535 5.9047 47 1 3.6456 -4.8052 4.7106 48 1 2.0833 -4.1727 2.8656 49 1 0.9363 -3.5208 4.0603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408155002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:19 Heat of formation + Delta-G solvation = -112.940216 kcal Electronic energy + Delta-G solvation = -28664.964390 eV Core-core repulsion = 24944.939114 eV Total energy + Delta-G solvation = -3720.025275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.16700 -36.74596 -36.34275 -35.44481 -35.11054 -32.87335 -32.41902 -31.93423 -29.42194 -28.20972 -27.73983 -25.03082 -23.54937 -22.38911 -22.23622 -21.74459 -20.08848 -19.79603 -18.54745 -17.29784 -16.64038 -16.35023 -15.75023 -15.32409 -15.14053 -15.01912 -14.59828 -14.31633 -14.02322 -13.78503 -13.69471 -13.40688 -13.26973 -12.69749 -12.56919 -12.23668 -12.15780 -12.04660 -11.75502 -11.58877 -11.48899 -11.44733 -11.40990 -11.18407 -11.10487 -11.03305 -11.02549 -10.90454 -10.78923 -10.68693 -10.47114 -10.41732 -10.03817 -9.95135 -9.74591 -9.70442 -9.16750 -8.42163 -8.02890 -6.04508 -4.08283 1.30537 3.34910 3.38320 3.43078 3.58107 4.20031 4.43609 4.46648 4.50386 4.54292 4.84405 4.88149 5.02949 5.07834 5.08929 5.20812 5.29956 5.31136 5.34694 5.37799 5.44680 5.51361 5.57323 5.62674 5.65274 5.70331 5.76163 5.84544 5.91245 5.94390 5.94519 6.00255 6.04238 6.12118 6.16555 6.23460 6.27899 6.32113 6.40162 6.47420 6.55797 6.59393 7.17430 7.31059 7.46743 7.65550 7.93212 8.23228 8.93875 9.56798 11.03942 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017246 B = 0.003745 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.143139 B = 7475.031792 C = 8143.861602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.995 5.995 3 C 0.261 3.739 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.781 3.219 13 O -0.967 6.967 14 O -1.001 7.001 15 N -1.126 6.126 16 C 0.154 3.846 17 H 0.087 0.913 18 C -0.143 4.143 19 C -0.112 4.112 20 C -0.079 4.079 21 H 0.067 0.933 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.113 4.113 26 C -0.083 4.083 27 H 0.071 0.929 28 C -0.116 4.116 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 -12.392 16.205 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.837 5.837 3 C 0.139 3.861 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.788 3.212 13 O -0.951 6.951 14 O -0.984 6.984 15 N -0.885 5.885 16 C 0.047 3.953 17 H 0.105 0.895 18 C -0.182 4.182 19 C -0.150 4.150 20 C -0.098 4.098 21 H 0.086 0.914 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.151 4.151 26 C -0.102 4.102 27 H 0.090 0.910 28 C -0.155 4.155 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.244 0.756 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.463 -12.704 15.398 20.260 hybrid contribution 0.439 0.753 -0.434 0.973 sum -3.024 -11.951 14.964 19.388 Atomic orbital electron populations 1.21415 0.80404 1.03454 1.00197 1.57569 1.14116 1.23276 1.88773 1.18993 0.90938 0.78724 0.97464 1.21478 1.36092 1.06300 0.93036 0.92286 1.24918 0.95117 0.96514 0.97401 1.69907 1.37331 1.15328 1.30941 0.86593 0.78284 0.77983 0.84800 1.20203 1.21193 1.20013 1.01923 0.73324 0.72956 0.72962 1.93637 1.40716 1.84874 1.75858 1.93516 1.67684 1.60198 1.77035 1.56327 1.14457 1.85901 1.31839 1.20675 0.88105 0.94627 0.91936 0.89483 1.22161 0.98252 0.98337 0.99410 1.21512 0.98847 0.97346 0.97283 1.21171 0.97610 0.94800 0.96187 0.91414 1.21604 0.98463 0.97708 0.97655 1.21523 1.00730 0.95534 0.97775 1.21535 0.98285 0.97360 0.98594 1.21571 0.98143 0.97782 0.97566 1.21160 0.98047 0.94864 0.96096 0.91026 1.21805 0.98643 0.97770 0.97259 0.94120 0.90459 0.91669 0.94809 0.94541 0.92691 0.75595 0.91352 0.90293 0.91983 0.91289 0.91815 0.92056 0.92359 0.92274 0.91977 0.92394 0.92105 0.92107 0.91281 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.54 10.43 59.84 0.62 2.16 16 2 N -0.99 -20.18 2.90 -123.06 -0.36 -20.53 16 3 C 0.26 6.44 5.08 -5.20 -0.03 6.42 16 4 C -0.53 -14.89 9.38 -34.44 -0.32 -15.21 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 S 2.78 54.77 6.08 -107.50 -0.65 54.11 16 13 O -0.97 -23.29 17.11 -57.17 -0.98 -24.27 16 14 O -1.00 -20.80 16.08 -57.17 -0.92 -21.72 16 15 N -1.13 -16.42 4.80 -4.91 -0.02 -16.44 16 16 C 0.15 1.85 3.14 -67.96 -0.21 1.63 16 17 H 0.09 1.07 7.50 -51.93 -0.39 0.68 16 18 C -0.14 -1.62 5.64 -26.73 -0.15 -1.77 16 19 C -0.11 -1.26 5.04 -26.73 -0.13 -1.40 16 20 C -0.08 -0.75 1.99 -90.62 -0.18 -0.93 16 21 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 22 C -0.12 -1.07 5.20 -26.73 -0.14 -1.21 16 23 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 24 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 25 C -0.11 -0.93 5.20 -26.74 -0.14 -1.06 16 26 C -0.08 -0.78 1.80 -90.62 -0.16 -0.94 16 27 H 0.07 0.74 6.50 -51.93 -0.34 0.41 16 28 C -0.12 -1.13 4.91 -26.76 -0.13 -1.26 16 29 H 0.04 0.55 6.22 -51.93 -0.32 0.23 16 30 H 0.08 1.33 8.07 -51.93 -0.42 0.92 16 31 H 0.06 1.05 7.02 -51.93 -0.36 0.68 16 32 H 0.03 0.85 8.11 -51.93 -0.42 0.42 16 33 H 0.04 0.96 7.61 -51.93 -0.40 0.57 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.41 5.49 6.81 -34.47 -0.23 5.26 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.02 5.53 -51.93 -0.29 0.73 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.90 7.45 -51.93 -0.39 0.51 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -32.87 379.03 -11.49 -44.37 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.60 Total: 1.32 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.39 Total: -14.11 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 0.36 Total: -62.33 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -1.90 Total: -45.99 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 54.77 SS G_CDS: -0.65 Total: 54.11 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.87 -11.49 -44.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408155002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.572 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds