Wall clock time and date at job start Tue Mar 31 2020 17:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47450 * 2 1 4 4 C 1.46504 * 120.00093 * 275.00504 * 3 2 1 5 5 C 1.50700 * 109.46823 * 280.55789 * 4 3 2 6 6 H 1.08000 * 120.00137 * 5.56558 * 5 4 3 7 7 C 1.37872 * 120.00021 * 185.55534 * 5 4 3 8 8 N 1.31514 * 119.99859 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00421 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46599 * 60.00141 * 9 7 5 11 11 H 1.48490 * 109.47597 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46944 * 300.00676 * 9 7 5 13 13 S 1.65601 * 120.00059 * 94.99981 * 3 2 1 14 14 O 1.42102 * 106.40111 * 330.40382 * 13 3 2 15 15 O 1.42094 * 106.40103 * 197.48898 * 13 3 2 16 16 N 1.65596 * 107.21819 * 83.94504 * 13 3 2 17 17 C 1.46499 * 120.00139 * 66.29815 * 16 13 3 18 18 C 1.52999 * 109.47430 * 165.65802 * 17 16 13 19 19 C 1.52990 * 109.47212 * 59.99990 * 18 17 16 20 20 C 1.52998 * 109.46698 * 299.99813 * 18 17 16 21 21 C 1.50697 * 109.46979 * 180.02562 * 18 17 16 22 22 C 1.30528 * 124.45287 * 0.02562 * 21 18 17 23 23 C 1.51094 * 111.10736 * 180.22459 * 22 21 18 24 24 C 1.54803 * 104.64550 * 343.20329 * 23 22 21 25 25 C 1.51105 * 124.44763 * 180.02562 * 21 18 17 26 26 H 1.09003 * 109.46984 * 299.99560 * 1 2 3 27 27 H 1.08999 * 109.47691 * 59.99993 * 1 2 3 28 28 H 1.09004 * 109.47108 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46888 * 239.99991 * 2 1 3 30 30 H 1.09007 * 109.47348 * 120.00003 * 2 1 3 31 31 H 1.09005 * 109.46636 * 40.55615 * 4 3 2 32 32 H 1.08999 * 109.46842 * 160.55772 * 4 3 2 33 33 H 0.97005 * 120.00263 * 179.97438 * 8 7 5 34 34 H 0.96997 * 119.99986 * 246.29773 * 16 13 3 35 35 H 1.09002 * 109.47026 * 45.65496 * 17 16 13 36 36 H 1.09006 * 109.47049 * 285.66036 * 17 16 13 37 37 H 1.08997 * 109.47473 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47198 * 299.99979 * 19 18 17 39 39 H 1.09002 * 109.47319 * 59.99729 * 19 18 17 40 40 H 1.08996 * 109.47642 * 300.00268 * 20 18 17 41 41 H 1.09006 * 109.47169 * 60.00353 * 20 18 17 42 42 H 1.09007 * 109.46994 * 180.02562 * 20 18 17 43 43 H 1.08001 * 124.44467 * 359.96216 * 22 21 18 44 44 H 1.09000 * 110.38441 * 102.13202 * 23 22 21 45 45 H 1.08998 * 110.39041 * 224.50617 * 23 22 21 46 46 H 1.09003 * 111.24279 * 266.87088 * 24 23 22 47 47 H 1.09002 * 110.89611 * 142.88657 * 24 23 22 48 48 H 1.09001 * 110.38386 * 315.26846 * 25 21 18 49 49 H 1.08995 * 110.38622 * 77.63680 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4321 1.6855 -1.9488 6 1 4.0275 0.8851 -1.5349 7 6 3.8375 2.3199 -3.1038 8 7 3.1126 3.2947 -3.6076 9 14 5.4169 1.7958 -3.9524 10 1 5.3177 0.3668 -4.3439 11 1 5.6276 2.6280 -5.1640 12 1 6.5613 1.9762 -3.0233 13 16 2.4122 2.1202 1.4287 14 8 1.5818 1.5378 2.4239 15 8 2.4449 3.5157 1.1629 16 7 3.9648 1.6779 1.7976 17 6 5.0739 2.1210 0.9493 18 6 6.3982 1.8938 1.6811 19 6 6.5590 0.4049 1.9941 20 6 6.4033 2.6928 2.9859 21 6 7.5390 2.3503 0.8087 22 6 7.3979 2.8592 -0.3850 23 6 8.7380 3.2070 -0.9901 24 6 9.7169 3.2216 0.2090 25 6 8.9965 2.2789 1.2008 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3077 1.8849 -1.9079 32 1 2.1913 3.1799 -1.0648 33 1 3.3979 3.7414 -4.4201 34 1 4.1399 1.1254 2.5754 35 1 4.9594 3.1818 0.7262 36 1 5.0702 1.5518 0.0196 37 1 7.5021 0.2430 2.5159 38 1 5.7337 0.0751 2.6254 39 1 6.5552 -0.1643 1.0646 40 1 6.2888 3.7535 2.7629 41 1 5.5781 2.3630 3.6172 42 1 7.3470 2.5313 3.5071 43 1 6.4482 3.0079 -0.8774 44 1 9.0346 2.4502 -1.7163 45 1 8.6992 4.1901 -1.4592 46 1 9.8174 4.2243 0.6246 47 1 10.6887 2.8194 -0.0774 48 1 9.1320 2.6292 2.2241 49 1 9.3687 1.2600 1.0950 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416501124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:41 Heat of formation + Delta-G solvation = -80.852537 kcal Electronic energy + Delta-G solvation = -28904.294857 eV Core-core repulsion = 25185.661008 eV Total energy + Delta-G solvation = -3718.633849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -39.39082 -36.65947 -36.36243 -35.98248 -35.14931 -32.72150 -32.47308 -29.90301 -28.92600 -27.54074 -27.14388 -26.63027 -25.37205 -23.14832 -21.66053 -20.96121 -20.24546 -18.87913 -17.52364 -17.05717 -16.70248 -16.38182 -15.67432 -15.42816 -15.33404 -14.88418 -14.48949 -14.18443 -13.71756 -13.34135 -13.24179 -13.01473 -12.87984 -12.75289 -12.34483 -12.05118 -11.99692 -11.88941 -11.77105 -11.70017 -11.64024 -11.44347 -11.31954 -11.24394 -11.17802 -11.01810 -10.98179 -10.89057 -10.85696 -10.53581 -10.47749 -10.37628 -10.24007 -10.00552 -9.78059 -8.90443 -8.50000 -8.43305 -8.03435 -6.11324 -4.18115 1.35634 2.48399 3.24875 3.31275 3.32315 3.59899 4.22029 4.34961 4.62929 4.67014 5.01715 5.06176 5.12673 5.16473 5.21324 5.23465 5.42071 5.43674 5.64251 5.70635 5.76054 5.76487 5.79946 5.83676 5.87241 5.90559 5.92949 5.97759 6.04270 6.09488 6.12713 6.20127 6.24210 6.27678 6.35197 6.38998 6.50784 6.55831 6.69763 6.74522 6.93168 7.18741 7.32485 7.40745 7.48402 7.71731 7.85825 8.16441 8.86167 9.47361 10.96330 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.010086 B = 0.006337 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.431172 B = 4417.724312 C = 6364.016596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.263 1.263 13 S 2.785 3.215 14 O -1.003 7.003 15 O -0.979 6.979 16 N -1.129 6.129 17 C 0.128 3.872 18 C -0.019 4.019 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.156 4.156 23 C -0.100 4.100 24 C -0.124 4.124 25 C -0.085 4.085 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.057 0.943 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.137 0.863 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.916 -4.761 9.280 13.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.188 1.188 13 S 2.793 3.207 14 O -0.987 6.987 15 O -0.963 6.963 16 N -0.888 5.888 17 C 0.002 3.998 18 C -0.021 4.021 19 C -0.193 4.193 20 C -0.194 4.194 21 C -0.135 4.135 22 C -0.174 4.174 23 C -0.137 4.137 24 C -0.162 4.162 25 C -0.122 4.122 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.155 0.845 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.308 -3.903 9.459 13.181 hybrid contribution 1.153 -0.799 -0.678 1.558 sum 9.461 -4.702 8.782 13.738 Atomic orbital electron populations 1.22212 0.97017 1.01281 1.02467 1.20931 0.93602 0.82961 1.01915 1.57729 1.78636 1.22883 1.24099 1.19209 0.97132 0.92628 0.78928 1.21470 1.07936 1.19019 1.09340 0.91900 1.24926 0.96984 0.94717 0.96990 1.69924 1.38277 1.22790 1.21465 0.86835 0.84343 0.78530 0.79463 1.20445 1.21386 1.18780 1.01730 0.72622 0.73737 0.72645 1.93544 1.65844 1.79684 1.59614 1.93573 1.86561 1.30924 1.85197 1.56017 1.25101 1.68832 1.38898 1.21488 0.83851 1.01197 0.93222 1.19428 0.92266 0.95666 0.94712 1.21808 1.01180 0.94565 1.01755 1.21824 1.01241 1.00362 0.95949 1.21643 0.94342 1.01533 0.96030 1.23453 0.99050 0.99098 0.95760 1.21366 0.93034 1.01627 0.97705 1.22467 0.97993 0.99687 0.96024 1.21192 0.92292 0.99538 0.99221 0.92508 0.92116 0.92496 0.90221 0.92263 0.94977 0.92551 0.92554 0.76243 0.90292 0.89363 0.92706 0.92526 0.92151 0.92264 0.92404 0.92784 0.84510 0.90964 0.91291 0.91298 0.91452 0.91585 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.15 0.38 -2.34 16 2 C 0.13 2.28 6.02 -4.04 -0.02 2.26 16 3 N -0.99 -20.07 2.84 -115.66 -0.33 -20.39 16 4 C 0.24 5.88 5.47 -5.19 -0.03 5.85 16 5 C -0.54 -13.38 8.41 -34.44 -0.29 -13.67 16 6 H 0.06 1.49 6.67 -52.49 -0.35 1.14 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 9 Si 0.88 19.72 29.54 -169.99 -5.02 14.70 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.26 -5.52 7.05 56.52 0.40 -5.12 16 13 S 2.78 54.94 6.08 -107.50 -0.65 54.29 16 14 O -1.00 -20.42 17.17 -57.17 -0.98 -21.40 16 15 O -0.98 -22.90 15.98 -57.17 -0.91 -23.81 16 16 N -1.13 -18.13 5.40 -10.61 -0.06 -18.19 16 17 C 0.13 2.15 3.93 -4.04 -0.02 2.13 16 18 C -0.02 -0.26 0.71 -155.67 -0.11 -0.37 16 19 C -0.14 -1.59 8.20 37.15 0.30 -1.29 16 20 C -0.14 -1.67 8.18 37.16 0.30 -1.36 16 21 C -0.13 -1.87 4.77 -100.74 -0.48 -2.35 16 22 C -0.16 -2.46 9.71 -35.70 -0.35 -2.81 16 23 C -0.10 -1.36 6.82 -26.74 -0.18 -1.54 16 24 C -0.12 -1.37 7.20 -24.92 -0.18 -1.55 16 25 C -0.09 -0.97 6.39 -26.82 -0.17 -1.14 16 26 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 27 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.06 0.90 7.78 -51.93 -0.40 0.50 16 31 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 32 H 0.06 1.52 6.77 -51.93 -0.35 1.17 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.40 5.37 6.46 -34.47 -0.22 5.15 16 35 H 0.08 1.49 7.38 -51.93 -0.38 1.11 16 36 H 0.09 1.63 5.61 -51.93 -0.29 1.34 16 37 H 0.05 0.56 8.01 -51.93 -0.42 0.14 16 38 H 0.06 0.60 6.61 -51.93 -0.34 0.26 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.67 7.18 -51.93 -0.37 0.30 16 42 H 0.05 0.56 7.41 -51.93 -0.38 0.18 16 43 H 0.14 2.52 6.71 -52.49 -0.35 2.17 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.68 7.39 -51.93 -0.38 0.29 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -30.08 392.73 -10.69 -40.77 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -8.45 Total: 8.63 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.94 Total: -16.52 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.35 Total: -62.56 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.90 Total: -45.22 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -0.65 Total: 54.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.08 -10.69 -40.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416501124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.083 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds