Wall clock time and date at job start Tue Mar 31 2020 16:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47008 * 2 1 4 4 C 1.50702 * 109.47398 * 239.99357 * 2 1 3 5 5 H 1.07998 * 120.00025 * 240.00177 * 4 2 1 6 6 C 1.37875 * 119.99744 * 60.00264 * 4 2 1 7 7 N 1.31515 * 120.00204 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99742 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47256 * 59.99947 * 8 6 4 10 10 H 1.48504 * 109.46890 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46802 * 299.99712 * 8 6 4 12 12 N 1.46504 * 109.47225 * 119.99231 * 2 1 3 13 13 C 1.46506 * 119.99593 * 59.99706 * 12 2 1 14 14 S 1.65596 * 120.00542 * 240.00348 * 12 2 1 15 15 O 1.42106 * 106.39836 * 336.45858 * 14 12 2 16 16 O 1.42097 * 106.40374 * 203.53811 * 14 12 2 17 17 N 1.65606 * 107.21969 * 89.99434 * 14 12 2 18 18 C 1.46505 * 119.99538 * 65.00038 * 17 14 12 19 19 C 1.52998 * 109.46765 * 164.99934 * 18 17 14 20 20 H 1.09002 * 110.06156 * 306.42050 * 19 18 17 21 21 C 1.54271 * 110.03278 * 67.83629 * 19 18 17 22 22 C 1.54884 * 104.19770 * 142.89381 * 21 19 18 23 23 C 1.54894 * 102.74702 * 322.05883 * 22 21 19 24 24 C 1.53873 * 110.03228 * 185.00253 * 19 18 17 25 25 H 1.09002 * 110.03070 * 0.02562 * 24 19 18 26 26 C 1.53005 * 110.03228 * 121.38317 * 24 19 18 27 27 C 1.53000 * 117.49672 * 247.92945 * 26 24 19 28 28 C 1.52997 * 117.49597 * 179.30911 * 26 24 19 29 29 H 1.08997 * 109.47213 * 300.00703 * 1 2 3 30 30 H 1.09001 * 109.46635 * 60.00480 * 1 2 3 31 31 H 1.08998 * 109.47404 * 180.02562 * 1 2 3 32 32 H 0.96995 * 119.99941 * 180.02562 * 7 6 4 33 33 H 1.08992 * 109.47472 * 270.00435 * 13 12 2 34 34 H 1.09003 * 109.47099 * 30.00573 * 13 12 2 35 35 H 1.08996 * 109.46548 * 150.00225 * 13 12 2 36 36 H 0.96995 * 119.99883 * 245.00483 * 17 14 12 37 37 H 1.08994 * 109.46674 * 45.00416 * 18 17 14 38 38 H 1.08995 * 109.47328 * 285.00350 * 18 17 14 39 39 H 1.09002 * 110.48328 * 261.57230 * 21 19 18 40 40 H 1.09000 * 110.48360 * 24.08487 * 21 19 18 41 41 H 1.08996 * 110.75718 * 80.36910 * 22 21 19 42 42 H 1.08991 * 110.75873 * 203.55863 * 22 21 19 43 43 H 1.08998 * 110.48844 * 279.26280 * 23 22 21 44 44 H 1.09001 * 110.48508 * 156.62189 * 23 22 21 45 45 H 1.08998 * 115.55191 * 33.64064 * 26 24 19 46 46 H 1.08999 * 117.49935 * 0.02562 * 27 26 24 47 47 H 1.09006 * 117.49458 * 145.02089 * 27 26 24 48 48 H 1.09004 * 117.49816 * 214.97803 * 28 26 24 49 49 H 1.08996 * 117.50307 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9429 0.8294 -2.6035 8 14 2.3215 -1.1207 -4.0078 9 1 1.8260 -2.5206 -4.0075 10 1 1.8272 -0.4203 -5.2204 11 1 3.8065 -1.1212 -4.0079 12 7 2.0184 -0.6905 1.1963 13 6 1.6643 -2.0931 1.4283 14 16 2.9704 0.1144 2.2863 15 8 3.5794 1.1831 1.5748 16 8 3.7117 -0.8786 2.9817 17 7 1.9606 0.8094 3.3998 18 6 1.1508 -0.0348 4.2817 19 6 0.6085 0.8080 5.4377 20 1 1.4265 1.3254 5.9390 21 6 -0.4188 1.8307 4.9096 22 6 -1.4975 1.8932 6.0192 23 6 -1.5955 0.4189 6.4841 24 6 -0.1397 -0.0896 6.4388 25 1 -0.1161 -1.1257 6.1013 26 6 0.4996 0.0242 7.8242 27 6 1.2251 -1.2070 8.3707 28 6 -0.1243 -0.7902 8.9592 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 0.7083 1.1605 -3.4845 33 1 0.7375 -2.1442 1.9995 34 1 1.5295 -2.5968 0.4711 35 1 2.4628 -2.5816 1.9867 36 1 1.9053 1.7754 3.4680 37 1 1.7668 -0.8418 4.6783 38 1 0.3187 -0.4563 3.7178 39 1 0.0484 2.8065 4.7763 40 1 -0.8532 1.4853 3.9715 41 1 -1.1729 2.5355 6.8378 42 1 -2.4490 2.2374 5.6141 43 1 -2.2216 -0.1556 5.8015 44 1 -1.9872 0.3645 7.4998 45 1 0.9102 1.0026 8.0736 46 1 1.2472 -2.0979 7.7431 47 1 2.1133 -1.0387 8.9797 48 1 -0.1239 -0.3478 9.9554 49 1 -0.9905 -1.4067 8.7191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416576421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:54 Heat of formation + Delta-G solvation = -72.758639 kcal Electronic energy + Delta-G solvation = -27902.058667 eV Core-core repulsion = 24183.775796 eV Total energy + Delta-G solvation = -3718.282872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -39.60987 -36.68435 -36.45322 -36.11274 -35.18364 -34.37348 -32.56069 -29.48683 -29.07957 -28.67076 -25.49020 -25.16092 -24.60874 -22.63346 -21.93918 -20.80600 -20.25912 -19.68478 -18.57516 -17.25023 -16.83046 -16.56228 -16.21843 -15.72547 -15.27534 -14.95799 -14.78239 -14.24253 -14.21359 -13.77666 -13.40000 -13.20778 -12.94221 -12.61958 -12.36151 -12.04479 -11.97831 -11.81633 -11.79176 -11.54947 -11.45654 -11.37644 -11.31791 -11.20961 -11.10578 -10.89150 -10.83092 -10.78908 -10.70198 -10.65368 -10.43387 -10.27205 -10.20697 -10.04072 -10.01832 -9.28457 -9.20088 -8.44097 -7.95526 -6.06410 -4.12948 1.27104 3.30778 3.35178 3.38333 3.52757 3.59188 4.15347 4.29511 4.40994 4.42087 4.48965 4.77055 4.80669 4.85429 5.01799 5.16874 5.24105 5.25204 5.29245 5.38081 5.40542 5.43490 5.54002 5.60905 5.63578 5.69292 5.74537 5.77653 5.86449 5.90406 5.91867 6.05191 6.10611 6.12279 6.19363 6.20612 6.33461 6.39044 6.67996 6.80136 6.85724 7.05332 7.21311 7.51981 7.64504 7.80902 8.06372 8.28987 8.88818 9.52604 10.99283 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.003220 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.050861 B = 8692.600312 C = 9184.239839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.989 5.989 13 C 0.096 3.904 14 S 2.780 3.220 15 O -0.976 6.976 16 O -0.998 6.998 17 N -1.132 6.132 18 C 0.129 3.871 19 C -0.091 4.091 20 H 0.081 0.919 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.057 4.057 25 H 0.076 0.924 26 C -0.141 4.141 27 C -0.181 4.181 28 C -0.182 4.182 29 H 0.010 0.990 30 H 0.091 0.909 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.035 0.965 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.411 0.589 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 -0.835 20.166 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.832 5.832 13 C -0.051 4.051 14 S 2.788 3.212 15 O -0.960 6.960 16 O -0.982 6.982 17 N -0.891 5.891 18 C 0.002 3.998 19 C -0.110 4.110 20 H 0.099 0.901 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.077 4.077 25 H 0.095 0.905 26 C -0.159 4.159 27 C -0.218 4.218 28 C -0.219 4.219 29 H 0.029 0.971 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.243 0.757 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.114 0.886 47 H 0.110 0.890 48 H 0.108 0.892 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.323 -0.880 20.003 20.718 hybrid contribution -0.166 -0.059 -0.836 0.854 sum -5.489 -0.939 19.167 19.960 Atomic orbital electron populations 1.22099 0.98257 0.99661 1.00498 1.18704 0.91252 0.92986 0.80432 0.92419 1.21310 1.31627 1.13039 0.90122 0.91975 1.24902 0.94954 0.95009 0.98977 1.69849 1.36477 1.22713 1.23862 0.86560 0.79363 0.79567 0.81923 1.20243 1.21223 1.20159 1.57645 1.69897 1.19812 1.35797 1.21313 0.98614 0.82512 1.02636 1.01892 0.73658 0.73149 0.72455 1.93612 1.74482 1.55983 1.71941 1.93518 1.69316 1.60835 1.74509 1.56167 1.62502 1.17296 1.53150 1.21327 0.94650 0.93002 0.90780 1.22031 0.98107 0.96059 0.94844 0.90062 1.22501 0.95969 0.98869 0.98811 1.22461 0.98845 0.96540 0.98169 1.22417 0.95605 0.96195 1.01298 1.21360 0.94384 0.99682 0.92230 0.90542 1.22393 1.03481 0.96114 0.93924 1.23041 0.95671 0.99020 1.04046 1.22931 0.96980 1.04264 0.97758 0.97111 0.89011 0.94916 0.92657 0.94594 0.89874 0.91958 0.75652 0.90857 0.91835 0.91593 0.90753 0.91755 0.91700 0.91508 0.91419 0.87936 0.88644 0.89017 0.89151 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.97 37.16 0.33 -2.95 16 2 C 0.27 6.57 2.62 -69.08 -0.18 6.38 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -14.04 7.99 -34.44 -0.28 -14.31 16 5 H 0.06 1.66 7.33 -52.49 -0.38 1.27 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.79 11.32 55.43 0.63 -24.16 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.99 -20.39 3.12 -115.85 -0.36 -20.75 16 13 C 0.10 1.69 9.65 59.85 0.58 2.27 16 14 S 2.78 54.47 6.14 -107.50 -0.66 53.81 16 15 O -0.98 -22.91 16.70 -57.17 -0.95 -23.87 16 16 O -1.00 -20.74 16.21 -57.17 -0.93 -21.67 16 17 N -1.13 -16.60 5.97 -10.61 -0.06 -16.66 16 18 C 0.13 1.58 5.30 -4.04 -0.02 1.56 16 19 C -0.09 -0.90 2.68 -89.50 -0.24 -1.14 16 20 H 0.08 0.81 7.53 -51.93 -0.39 0.42 16 21 C -0.12 -1.19 5.90 -25.07 -0.15 -1.34 16 22 C -0.12 -1.01 6.91 -24.74 -0.17 -1.18 16 23 C -0.12 -0.94 6.30 -25.07 -0.16 -1.10 16 24 C -0.06 -0.50 2.74 -89.50 -0.25 -0.74 16 25 H 0.08 0.68 7.47 -51.93 -0.39 0.30 16 26 C -0.14 -1.16 4.97 -90.62 -0.45 -1.61 16 27 C -0.18 -1.47 10.18 -26.73 -0.27 -1.75 16 28 C -0.18 -1.34 9.45 -26.73 -0.25 -1.59 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 31 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.54 7.02 -51.93 -0.36 1.18 16 35 H 0.06 1.04 7.02 -51.93 -0.36 0.67 16 36 H 0.41 5.37 8.32 -34.47 -0.29 5.08 16 37 H 0.07 0.92 7.75 -51.93 -0.40 0.52 16 38 H 0.06 0.77 8.00 -51.93 -0.42 0.35 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.80 7.76 -51.93 -0.40 0.40 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.50 7.20 -51.93 -0.37 0.13 16 45 H 0.10 0.84 7.91 -51.93 -0.41 0.43 16 46 H 0.10 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.09 0.66 8.12 -51.93 -0.42 0.23 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -31.51 392.88 -11.65 -43.16 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -8.61 Total: 3.95 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -1.60 Total: -15.85 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.20 Total: -61.58 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -1.88 Total: -45.54 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 54.47 SS G_CDS: -0.66 Total: 53.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.51 -11.65 -43.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416576421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.594 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds