Wall clock time and date at job start Tue Mar 31 2020 16:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47008 * 2 1 4 4 C 1.50702 * 109.47398 * 239.99357 * 2 1 3 5 5 H 1.07998 * 120.00025 * 240.00177 * 4 2 1 6 6 C 1.37875 * 119.99744 * 60.00264 * 4 2 1 7 7 N 1.31515 * 120.00204 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99742 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47256 * 59.99947 * 8 6 4 10 10 H 1.48504 * 109.46890 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46802 * 299.99712 * 8 6 4 12 12 N 1.46504 * 109.47225 * 119.99231 * 2 1 3 13 13 C 1.46506 * 119.99593 * 59.99706 * 12 2 1 14 14 S 1.65596 * 120.00542 * 240.00348 * 12 2 1 15 15 O 1.42106 * 106.39836 * 336.45858 * 14 12 2 16 16 O 1.42097 * 106.40374 * 203.53811 * 14 12 2 17 17 N 1.65606 * 107.21969 * 89.99434 * 14 12 2 18 18 C 1.46505 * 119.99538 * 65.00038 * 17 14 12 19 19 C 1.52998 * 109.46765 * 164.99934 * 18 17 14 20 20 H 1.09002 * 110.06156 * 306.42050 * 19 18 17 21 21 C 1.54271 * 110.03278 * 67.83629 * 19 18 17 22 22 C 1.54884 * 104.19770 * 142.89381 * 21 19 18 23 23 C 1.54894 * 102.74702 * 322.05883 * 22 21 19 24 24 C 1.53873 * 110.03228 * 185.00253 * 19 18 17 25 25 H 1.09002 * 110.03070 * 0.02562 * 24 19 18 26 26 C 1.53005 * 110.03228 * 121.38317 * 24 19 18 27 27 C 1.53000 * 117.49672 * 247.92945 * 26 24 19 28 28 C 1.52997 * 117.49597 * 179.30911 * 26 24 19 29 29 H 1.08997 * 109.47213 * 300.00703 * 1 2 3 30 30 H 1.09001 * 109.46635 * 60.00480 * 1 2 3 31 31 H 1.08998 * 109.47404 * 180.02562 * 1 2 3 32 32 H 0.96995 * 119.99941 * 180.02562 * 7 6 4 33 33 H 1.08992 * 109.47472 * 270.00435 * 13 12 2 34 34 H 1.09003 * 109.47099 * 30.00573 * 13 12 2 35 35 H 1.08996 * 109.46548 * 150.00225 * 13 12 2 36 36 H 0.96995 * 119.99883 * 245.00483 * 17 14 12 37 37 H 1.08994 * 109.46674 * 45.00416 * 18 17 14 38 38 H 1.08995 * 109.47328 * 285.00350 * 18 17 14 39 39 H 1.09002 * 110.48328 * 261.57230 * 21 19 18 40 40 H 1.09000 * 110.48360 * 24.08487 * 21 19 18 41 41 H 1.08996 * 110.75718 * 80.36910 * 22 21 19 42 42 H 1.08991 * 110.75873 * 203.55863 * 22 21 19 43 43 H 1.08998 * 110.48844 * 279.26280 * 23 22 21 44 44 H 1.09001 * 110.48508 * 156.62189 * 23 22 21 45 45 H 1.08998 * 115.55191 * 33.64064 * 26 24 19 46 46 H 1.08999 * 117.49935 * 0.02562 * 27 26 24 47 47 H 1.09006 * 117.49458 * 145.02089 * 27 26 24 48 48 H 1.09004 * 117.49816 * 214.97803 * 28 26 24 49 49 H 1.08996 * 117.50307 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9429 0.8294 -2.6035 8 14 2.3215 -1.1207 -4.0078 9 1 1.8260 -2.5206 -4.0075 10 1 1.8272 -0.4203 -5.2204 11 1 3.8065 -1.1212 -4.0079 12 7 2.0184 -0.6905 1.1963 13 6 1.6643 -2.0931 1.4283 14 16 2.9704 0.1144 2.2863 15 8 3.5794 1.1831 1.5748 16 8 3.7117 -0.8786 2.9817 17 7 1.9606 0.8094 3.3998 18 6 1.1508 -0.0348 4.2817 19 6 0.6085 0.8080 5.4377 20 1 1.4265 1.3254 5.9390 21 6 -0.4188 1.8307 4.9096 22 6 -1.4975 1.8932 6.0192 23 6 -1.5955 0.4189 6.4841 24 6 -0.1397 -0.0896 6.4388 25 1 -0.1161 -1.1257 6.1013 26 6 0.4996 0.0242 7.8242 27 6 1.2251 -1.2070 8.3707 28 6 -0.1243 -0.7902 8.9592 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 0.7083 1.1605 -3.4845 33 1 0.7375 -2.1442 1.9995 34 1 1.5295 -2.5968 0.4711 35 1 2.4628 -2.5816 1.9867 36 1 1.9053 1.7754 3.4680 37 1 1.7668 -0.8418 4.6783 38 1 0.3187 -0.4563 3.7178 39 1 0.0484 2.8065 4.7763 40 1 -0.8532 1.4853 3.9715 41 1 -1.1729 2.5355 6.8378 42 1 -2.4490 2.2374 5.6141 43 1 -2.2216 -0.1556 5.8015 44 1 -1.9872 0.3645 7.4998 45 1 0.9102 1.0026 8.0736 46 1 1.2472 -2.0979 7.7431 47 1 2.1133 -1.0387 8.9797 48 1 -0.1239 -0.3478 9.9554 49 1 -0.9905 -1.4067 8.7191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416576421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:48 Heat of formation + Delta-G solvation = -92.242810 kcal Electronic energy + Delta-G solvation = -27902.903565 eV Core-core repulsion = 24183.775796 eV Total energy + Delta-G solvation = -3719.127769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -40.33136 -38.31921 -37.87978 -37.23486 -36.87954 -35.38860 -34.51250 -30.91105 -30.35326 -29.37843 -27.23113 -26.98788 -25.52234 -23.22488 -22.65639 -22.56628 -21.04603 -20.60615 -19.88731 -18.76602 -18.57867 -18.14820 -17.42687 -16.87101 -16.68801 -16.18476 -15.67995 -15.54241 -15.14964 -14.91398 -14.82991 -14.66196 -14.32958 -13.81724 -13.75764 -13.46240 -13.35398 -13.17389 -13.11986 -12.99750 -12.92601 -12.71118 -12.61622 -12.47671 -12.27468 -12.23909 -12.12253 -12.10816 -11.92026 -11.79521 -11.58350 -11.49523 -11.31282 -11.16846 -10.93146 -10.65498 -10.50297 -10.39580 -9.64624 -8.11347 -6.24819 -0.29242 1.42978 1.45188 1.51990 2.06660 2.43678 2.64919 2.96616 3.17000 3.42662 3.64331 3.69779 3.74883 4.09382 4.15372 4.16545 4.21332 4.38238 4.43458 4.54652 4.59565 4.63785 4.71253 4.76495 4.79068 4.84549 4.87104 4.93993 4.98956 5.03210 5.03818 5.08461 5.13489 5.17073 5.18395 5.27197 5.32393 5.33725 5.40506 5.45504 5.54322 5.58412 5.61695 5.70448 5.88471 6.07706 6.22298 6.31114 6.82658 7.43918 8.92695 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.003220 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.050861 B = 8692.600312 C = 9184.239839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.275 3.725 3 H 0.023 0.977 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.996 5.996 13 C 0.091 3.909 14 S 2.796 3.204 15 O -1.020 7.020 16 O -1.011 7.011 17 N -1.117 6.117 18 C 0.123 3.877 19 C -0.085 4.085 20 H 0.082 0.918 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.054 4.054 25 H 0.075 0.925 26 C -0.146 4.146 27 C -0.191 4.191 28 C -0.172 4.172 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.420 0.580 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 -1.583 21.597 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.838 5.838 13 C -0.054 4.054 14 S 2.805 3.195 15 O -1.004 7.004 16 O -0.994 6.994 17 N -0.880 5.880 18 C -0.003 4.003 19 C -0.105 4.105 20 H 0.100 0.900 21 C -0.164 4.164 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.074 4.074 25 H 0.093 0.907 26 C -0.164 4.164 27 C -0.228 4.228 28 C -0.209 4.209 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.255 0.745 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.121 0.879 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.117 0.883 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.415 -1.646 21.443 22.443 hybrid contribution 0.183 0.175 -1.185 1.212 sum -6.232 -1.472 20.258 21.246 Atomic orbital electron populations 1.21884 0.96749 1.00142 1.00386 1.18371 0.92251 0.91261 0.81075 0.95874 1.21652 1.31709 1.13128 0.91555 0.92460 1.25630 0.95203 0.95716 1.01635 1.69967 1.37221 1.23685 1.24403 0.85669 0.78424 0.79090 0.78796 1.19035 1.20690 1.20555 1.57517 1.69914 1.21081 1.35271 1.21494 1.00525 0.80767 1.02658 1.01182 0.73648 0.72316 0.72378 1.93548 1.76040 1.57426 1.73400 1.93496 1.70021 1.61323 1.74549 1.55736 1.62159 1.17986 1.52114 1.21590 0.94425 0.93116 0.91173 1.22002 0.98304 0.96042 0.94153 0.89951 1.22511 0.96336 0.98731 0.98849 1.22445 0.98483 0.96913 0.97796 1.22402 0.95026 0.95862 1.01866 1.21327 0.94691 0.99261 0.92093 0.90669 1.22374 1.03906 0.96179 0.93965 1.23095 0.96386 0.98916 1.04430 1.22985 0.96550 1.03562 0.97819 0.94622 0.91643 0.94000 0.92631 0.91355 0.91029 0.91058 0.74517 0.90907 0.91156 0.91489 0.91854 0.91116 0.91334 0.91518 0.90475 0.87885 0.89008 0.88846 0.88255 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.97 71.98 0.65 -5.23 16 2 C 0.27 13.51 2.62 44.25 0.12 13.62 16 3 H 0.02 1.31 6.91 -2.39 -0.02 1.29 16 4 C -0.54 -29.38 7.99 25.60 0.20 -29.18 16 5 H 0.06 3.08 7.33 -2.91 -0.02 3.06 16 6 C 0.02 0.99 5.30 84.65 0.45 1.44 16 7 N -0.91 -51.45 11.32 21.45 0.24 -51.20 16 8 Si 0.95 43.36 29.54 68.60 2.03 45.39 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 N -1.00 -40.68 3.12 -520.43 -1.62 -42.30 16 13 C 0.09 3.09 9.65 127.77 1.23 4.32 16 14 S 2.80 109.19 6.14 -56.49 -0.35 108.84 16 15 O -1.02 -48.92 16.70 -128.00 -2.14 -51.06 16 16 O -1.01 -41.36 16.21 -128.00 -2.07 -43.44 16 17 N -1.12 -31.72 5.97 -187.49 -1.12 -32.84 16 18 C 0.12 2.80 5.30 86.38 0.46 3.26 16 19 C -0.08 -1.53 2.68 -10.07 -0.03 -1.56 16 20 H 0.08 1.49 7.53 -2.39 -0.02 1.47 16 21 C -0.13 -2.22 5.90 31.67 0.19 -2.03 16 22 C -0.12 -1.70 6.91 31.89 0.22 -1.48 16 23 C -0.11 -1.55 6.30 31.67 0.20 -1.35 16 24 C -0.05 -0.83 2.74 -10.07 -0.03 -0.86 16 25 H 0.07 1.18 7.47 -2.39 -0.02 1.16 16 26 C -0.15 -2.10 4.97 -10.79 -0.05 -2.15 16 27 C -0.19 -2.80 10.18 30.59 0.31 -2.49 16 28 C -0.17 -2.13 9.45 30.59 0.29 -1.84 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 31 H 0.04 1.74 7.67 -2.39 -0.02 1.72 16 32 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 2.59 7.02 -2.39 -0.02 2.58 16 35 H 0.07 2.28 7.02 -2.39 -0.02 2.26 16 36 H 0.42 10.65 8.32 -96.75 -0.80 9.84 16 37 H 0.07 1.70 7.75 -2.39 -0.02 1.68 16 38 H 0.07 1.54 8.00 -2.39 -0.02 1.52 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.26 7.76 -2.39 -0.02 1.24 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 0.92 7.20 -2.39 -0.02 0.91 16 45 H 0.10 1.48 7.91 -2.39 -0.02 1.46 16 46 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16 47 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 48 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.10 1.13 8.12 -2.39 -0.02 1.11 16 Total: -1.00 -67.32 392.88 -0.71 -68.03 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.12 Total: 24.11 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 4.21 Total: -25.53 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -2.50 Total: -126.35 kcal Atomic # 8 Polarization: -90.29 SS G_CDS: -4.21 Total: -94.50 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 109.19 SS G_CDS: -0.35 Total: 108.84 kcal Total: -67.32 -0.71 -68.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416576421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.213 kcal (2) G-P(sol) polarization free energy of solvation -67.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds