Wall clock time and date at job start Tue Mar 31 2020 17:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47553 * 2 1 4 4 C 1.46500 * 119.99728 * 275.00113 * 3 2 1 5 5 C 1.50704 * 109.47292 * 274.99576 * 4 3 2 6 6 H 1.08007 * 119.99522 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00230 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99878 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00038 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46928 * 90.00097 * 9 7 5 11 11 H 1.48499 * 109.47349 * 209.99887 * 9 7 5 12 12 H 1.48499 * 109.47194 * 330.00588 * 9 7 5 13 13 S 1.65599 * 120.00205 * 94.99726 * 3 2 1 14 14 O 1.42102 * 106.40284 * 336.46659 * 13 3 2 15 15 O 1.42098 * 106.40518 * 203.54181 * 13 3 2 16 16 N 1.65602 * 107.21686 * 90.00301 * 13 3 2 17 17 C 1.47019 * 125.65172 * 90.02609 * 16 13 3 18 18 C 1.54322 * 107.27593 * 178.89427 * 17 16 13 19 19 C 1.55156 * 102.93944 * 337.80686 * 18 17 16 20 20 H 1.08993 * 111.00581 * 277.38669 * 19 18 17 21 21 C 1.53004 * 111.00142 * 153.57520 * 19 18 17 22 22 C 1.54270 * 110.48468 * 181.45392 * 21 19 18 23 23 C 1.53869 * 106.63967 * 217.73631 * 22 21 19 24 24 C 1.54268 * 106.60115 * 359.97438 * 23 22 21 25 25 C 1.54895 * 104.19476 * 23.60777 * 24 23 22 26 26 C 1.47429 * 125.64994 * 269.97441 * 16 13 3 27 27 H 1.08998 * 109.47184 * 59.99615 * 1 2 3 28 28 H 1.08998 * 109.47660 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46926 * 300.00492 * 1 2 3 30 30 H 1.09003 * 109.47605 * 239.99780 * 2 1 3 31 31 H 1.09008 * 109.47411 * 119.99946 * 2 1 3 32 32 H 1.08999 * 109.47358 * 34.99693 * 4 3 2 33 33 H 1.09003 * 109.47009 * 154.99831 * 4 3 2 34 34 H 0.97001 * 119.99671 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.88151 * 59.47324 * 17 16 13 36 36 H 1.09002 * 109.87891 * 298.31281 * 17 16 13 37 37 H 1.08999 * 110.71942 * 219.44267 * 18 17 16 38 38 H 1.09002 * 110.72151 * 96.16973 * 18 17 16 39 39 H 1.08997 * 110.53944 * 304.06482 * 21 19 18 40 40 H 1.09002 * 110.03399 * 98.42629 * 22 21 19 41 41 H 1.08995 * 110.02943 * 337.04529 * 22 21 19 42 42 H 1.08999 * 110.03405 * 119.26051 * 23 22 21 43 43 H 1.09001 * 110.03705 * 240.64196 * 23 22 21 44 44 H 1.08997 * 110.48788 * 142.28685 * 24 23 22 45 45 H 1.09000 * 110.48806 * 264.79985 * 24 23 22 46 46 H 1.09001 * 110.75082 * 80.37254 * 25 24 23 47 47 H 1.08991 * 110.75596 * 203.55944 * 25 24 23 48 48 H 1.08998 * 110.36997 * 85.32800 * 26 16 13 49 49 H 1.09003 * 110.36615 * 323.01276 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8824 6 1 4.1721 1.1109 -1.3839 7 6 3.8526 2.3604 -3.0849 8 7 3.0276 3.1853 -3.6921 9 14 5.5095 1.9644 -3.8511 10 1 5.3747 0.7807 -4.7377 11 1 5.9779 3.1277 -4.6464 12 1 6.4932 1.6697 -2.7783 13 16 2.4122 2.1202 1.4286 14 8 1.6869 1.4415 2.4448 15 8 2.3058 3.5186 1.1998 16 7 4.0144 1.8136 1.7137 17 6 5.1393 2.6480 1.2666 18 6 6.4342 1.9876 1.7849 19 6 5.9331 1.1267 2.9744 20 1 5.8313 1.7291 3.8771 21 6 6.8597 -0.0665 3.2165 22 6 6.3309 -0.9338 4.3776 23 6 7.5626 -1.4160 5.1637 24 6 8.7980 -0.8256 4.4530 25 6 8.2492 0.4149 3.7052 26 6 4.5491 0.6593 2.4588 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3618 1.8097 -1.9453 33 1 2.0922 3.1802 -1.0756 34 1 3.2795 3.5877 -4.5379 35 1 5.0438 3.6518 1.6805 36 1 5.1568 2.6940 0.1777 37 1 7.1422 2.7427 2.1265 38 1 6.8812 1.3586 1.0150 39 1 6.9600 -0.6629 2.3098 40 1 5.7806 -1.7887 3.9845 41 1 5.6849 -0.3393 5.0235 42 1 7.5147 -1.0549 6.1910 43 1 7.6097 -2.5050 5.1529 44 1 9.5520 -0.5289 5.1821 45 1 9.2130 -1.5459 3.7480 46 1 8.1472 1.2614 4.3843 47 1 8.8904 0.6727 2.8624 48 1 4.6609 -0.2001 1.7978 49 1 3.8960 0.4126 3.2959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420727680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:09 Heat of formation + Delta-G solvation = -100.754609 kcal Electronic energy + Delta-G solvation = -28401.744765 eV Core-core repulsion = 24682.247897 eV Total energy + Delta-G solvation = -3719.496868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.31313 -36.99765 -36.63270 -35.98687 -35.17208 -32.71222 -31.57687 -29.91983 -29.51934 -28.55916 -26.74220 -26.59229 -23.12031 -22.29501 -21.59794 -21.30831 -20.36589 -19.70713 -18.33462 -17.19767 -16.91145 -16.27126 -16.14439 -15.67395 -15.40600 -14.62225 -14.41432 -14.00864 -13.96105 -13.51006 -13.29734 -13.18232 -13.03310 -12.88630 -12.47492 -12.14031 -12.04268 -11.96689 -11.86967 -11.66897 -11.44004 -11.36167 -11.31446 -11.24970 -11.07157 -11.03401 -10.94620 -10.81338 -10.62089 -10.49176 -10.44653 -10.42686 -10.40239 -10.33063 -10.03044 -9.75528 -8.55677 -8.48146 -8.03117 -6.11007 -4.17377 1.28097 3.23544 3.30965 3.32158 3.54746 4.15635 4.30851 4.35709 4.48640 4.55380 4.75615 4.87259 4.99281 5.17542 5.23529 5.31353 5.40756 5.42604 5.45828 5.47168 5.52538 5.61271 5.63100 5.71498 5.76710 5.79032 5.80051 5.83365 5.88694 5.96238 6.00862 6.09935 6.11340 6.14598 6.20847 6.23716 6.32296 6.41780 6.51594 6.57700 6.67591 6.67950 6.86147 7.37101 7.46756 7.68189 7.86565 8.16488 8.87634 9.48253 10.97036 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011034 B = 0.004689 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.064298 B = 5969.602825 C = 7429.305543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.992 5.992 4 C 0.245 3.755 5 C -0.537 4.537 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.798 3.202 14 O -0.997 6.997 15 O -0.976 6.976 16 N -1.015 6.015 17 C 0.119 3.881 18 C -0.121 4.121 19 C -0.090 4.090 20 H 0.082 0.918 21 C -0.081 4.081 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.118 4.118 26 C 0.125 3.875 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.135 -8.118 13.762 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.833 5.833 4 C 0.123 3.877 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.808 3.192 14 O -0.981 6.981 15 O -0.960 6.960 16 N -0.854 5.854 17 C -0.007 4.007 18 C -0.160 4.160 19 C -0.110 4.110 20 H 0.100 0.900 21 C -0.100 4.100 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.163 4.163 25 C -0.156 4.156 26 C -0.001 4.001 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.409 -7.451 14.114 17.596 hybrid contribution 1.139 -0.449 -0.947 1.548 sum 8.548 -7.900 13.167 17.574 Atomic orbital electron populations 1.22204 0.96943 1.01362 1.02381 1.20956 0.93630 0.83013 1.01970 1.57810 1.78246 1.22904 1.24318 1.19186 0.97298 0.92204 0.79023 1.21552 1.02249 1.27909 1.05964 0.91912 1.24952 0.97179 0.94846 0.96891 1.69937 1.35995 1.29806 1.17019 0.86595 0.84074 0.77904 0.79410 1.20700 1.21143 1.19733 1.01337 0.71766 0.73291 0.72765 1.93523 1.70173 1.76613 1.57831 1.93565 1.85619 1.30843 1.86005 1.59054 1.23682 1.34454 1.68200 1.21723 0.84541 0.93299 1.01123 1.22670 0.96877 0.99107 0.97345 1.22420 0.93961 0.96117 0.98468 0.89955 1.21987 0.94227 0.95376 0.98439 1.22237 0.97505 0.99423 0.96947 1.22126 0.94761 1.00158 0.99152 1.22354 0.97306 0.97532 0.99129 1.22540 0.95811 0.97511 0.99691 1.21959 0.94557 0.88602 0.94995 0.92069 0.92355 0.92680 0.90304 0.92092 0.94447 0.93244 0.92615 0.91965 0.89655 0.90680 0.90648 0.90340 0.91739 0.91547 0.92118 0.92160 0.92027 0.91803 0.91441 0.91519 0.91949 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 37.15 0.38 -2.37 16 2 C 0.13 2.33 6.06 -4.05 -0.02 2.30 16 3 N -0.99 -20.88 2.83 -115.66 -0.33 -21.21 16 4 C 0.25 6.11 5.43 -5.19 -0.03 6.08 16 5 C -0.54 -13.91 8.93 -34.44 -0.31 -14.21 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 9 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 13 S 2.80 57.99 6.31 -107.50 -0.68 57.31 16 14 O -1.00 -20.89 16.43 -57.17 -0.94 -21.83 16 15 O -0.98 -23.50 16.27 -57.17 -0.93 -24.43 16 16 N -1.02 -17.78 3.76 -111.42 -0.42 -18.20 16 17 C 0.12 1.97 6.99 -3.07 -0.02 1.95 16 18 C -0.12 -1.53 6.06 -24.90 -0.15 -1.68 16 19 C -0.09 -1.04 2.37 -88.47 -0.21 -1.25 16 20 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.08 -0.79 2.35 -88.92 -0.21 -1.00 16 22 C -0.12 -1.11 5.99 -25.61 -0.15 -1.26 16 23 C -0.12 -0.99 6.80 -25.62 -0.17 -1.16 16 24 C -0.13 -0.99 6.83 -25.07 -0.17 -1.16 16 25 C -0.12 -1.02 5.97 -24.70 -0.15 -1.16 16 26 C 0.12 1.76 6.19 -2.53 -0.02 1.74 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 31 H 0.06 0.97 7.61 -51.92 -0.40 0.58 16 32 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 33 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.63 7.69 -51.93 -0.40 1.23 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.57 8.06 -51.93 -0.42 0.16 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.84 8.04 -51.93 -0.42 0.43 16 49 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 LS Contribution 395.55 15.07 5.96 5.96 Total: -1.00 -30.85 395.55 -12.05 -42.90 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -9.10 Total: 0.20 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.33 Total: -11.55 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.01 Total: -63.97 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -1.87 Total: -46.26 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 57.99 SS G_CDS: -0.68 Total: 57.31 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.85 -12.05 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420727680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.858 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds