Wall clock time and date at job start Tue Mar 31 2020 16:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.51011 * 2 1 4 4 C 1.53099 * 109.51067 * 239.90814 * 2 1 3 5 5 N 1.47003 * 109.26063 * 183.21652 * 4 2 1 6 6 C 1.46901 * 111.00492 * 182.39424 * 5 4 2 7 7 C 1.52992 * 109.47859 * 170.00176 * 6 5 4 8 8 C 1.52997 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 8 12 12 O 1.21273 * 120.00093 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99944 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.47324 * 179.97438 * 13 11 10 15 15 C 1.76198 * 100.00237 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99945 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 180.02562 * 15 14 13 18 18 N 1.31631 * 119.99752 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00200 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47403 * 90.00120 * 19 17 15 21 21 H 1.48498 * 109.47041 * 209.99846 * 19 17 15 22 22 H 1.48497 * 109.47017 * 329.99854 * 19 17 15 23 23 C 1.47015 * 110.75418 * 58.61881 * 5 4 2 24 24 C 1.53098 * 109.25500 * 301.38234 * 23 5 4 25 25 H 1.09000 * 109.50858 * 296.91069 * 24 23 5 26 26 C 1.53008 * 109.54214 * 176.80398 * 24 23 5 27 27 O 1.43016 * 109.26034 * 56.85057 * 24 23 5 28 28 H 1.09002 * 109.47699 * 180.08822 * 1 2 3 29 29 H 1.08997 * 109.47384 * 300.09598 * 1 2 3 30 30 H 1.09006 * 109.47209 * 60.08762 * 1 2 3 31 31 H 1.09006 * 109.50391 * 63.27978 * 4 2 1 32 32 H 1.08999 * 109.54212 * 303.17565 * 4 2 1 33 33 H 1.09002 * 109.46980 * 49.99835 * 6 5 4 34 34 H 1.09001 * 109.46628 * 290.00257 * 6 5 4 35 35 H 1.09002 * 109.47103 * 59.99734 * 7 6 5 36 36 H 1.08998 * 109.46862 * 300.00546 * 7 6 5 37 37 H 1.09002 * 109.47153 * 59.99783 * 8 7 6 38 38 H 1.09001 * 109.46832 * 299.99974 * 8 7 6 39 39 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 40 40 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 41 41 H 0.97005 * 120.00448 * 359.97438 * 10 9 8 42 42 H 1.08998 * 109.47224 * 300.00395 * 13 11 10 43 43 H 1.09002 * 109.47152 * 59.99840 * 13 11 10 44 44 H 0.97005 * 120.00180 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.50776 * 61.31277 * 23 5 4 46 46 H 1.08998 * 109.50960 * 181.45024 * 23 5 4 47 47 H 1.09000 * 109.46800 * 300.19640 * 26 24 23 48 48 H 1.09001 * 109.46994 * 60.19710 * 26 24 23 49 49 H 1.09007 * 109.47012 * 180.19573 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2486 5 7 3.5092 -0.7881 -1.2046 6 6 4.0447 -1.4261 -2.4147 7 6 5.5645 -1.2540 -2.4522 8 6 6.1222 -1.9191 -3.7121 9 6 7.6421 -1.7475 -3.7492 10 7 8.1760 -2.3838 -4.9560 11 6 9.5010 -2.3579 -5.2015 12 8 10.2511 -1.8076 -4.4236 13 6 10.0502 -3.0130 -6.4425 14 16 11.8481 -2.8086 -6.4874 15 6 12.2134 -3.6427 -7.9958 16 1 11.4161 -4.0833 -8.5760 17 6 13.5258 -3.7335 -8.4384 18 7 13.7987 -4.3570 -9.5651 19 14 14.9048 -2.9720 -7.4345 20 1 15.4236 -3.9723 -6.4673 21 1 16.0006 -2.5462 -8.3417 22 1 14.3866 -1.7923 -6.6964 23 6 3.9639 -1.4884 0.0054 24 6 3.4334 -0.7572 1.2414 25 1 3.8533 0.2480 1.2779 26 6 3.8357 -1.5250 2.5023 27 8 2.0075 -0.6766 1.1660 28 1 -0.3634 -1.0276 0.0016 29 1 -0.3634 0.5153 0.8891 30 1 -0.3634 0.5125 -0.8908 31 1 1.7273 -0.1788 -2.1391 32 1 1.6332 -1.7339 -1.2773 33 1 3.6044 -0.9602 -3.2962 34 1 3.7995 -2.4881 -2.4042 35 1 6.0048 -1.7199 -1.5706 36 1 5.8097 -0.1920 -2.4625 37 1 5.6819 -1.4535 -4.5939 38 1 5.8769 -2.9811 -3.7012 39 1 7.8877 -0.6855 -3.7599 40 1 8.0819 -2.2132 -2.8675 41 1 7.5759 -2.8237 -5.5784 42 1 9.8051 -4.0750 -6.4317 43 1 9.6099 -2.5475 -7.3243 44 1 14.7159 -4.4208 -9.8743 45 1 3.5865 -2.5110 -0.0024 46 1 5.0535 -1.5020 0.0303 47 1 3.4167 -2.5305 2.4645 48 1 4.9225 -1.5861 2.5592 49 1 3.4544 -1.0053 3.3813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443676112.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:25 Heat of formation + Delta-G solvation = -99.347105 kcal Electronic energy + Delta-G solvation = -25049.583535 eV Core-core repulsion = 21330.147701 eV Total energy + Delta-G solvation = -3719.435834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.32271 -39.28688 -37.14755 -35.42447 -34.21023 -33.04044 -32.43930 -30.80609 -29.77906 -27.83361 -27.24993 -25.63194 -24.87080 -22.50875 -22.31028 -21.40121 -20.84681 -20.29188 -17.86097 -17.08945 -16.67120 -16.39737 -16.32414 -16.01255 -15.73221 -15.47172 -15.00075 -14.91131 -14.73475 -14.31087 -13.84039 -13.57692 -13.41207 -13.31205 -13.11560 -12.80611 -12.71462 -12.64965 -12.47716 -12.39004 -12.25751 -12.03753 -11.88765 -11.64141 -11.46181 -11.30356 -11.26084 -11.01279 -11.00045 -10.78877 -10.59911 -9.98533 -9.85566 -9.52105 -9.02035 -8.95646 -8.88507 -8.50109 -6.91919 -6.29106 -4.00854 2.76438 2.98455 3.14170 3.22909 3.32797 3.38732 3.50794 3.68033 4.20260 4.33223 4.37459 4.39750 4.54016 4.58925 4.64247 4.67472 4.72898 4.86320 4.90409 4.94552 4.95339 5.05354 5.06650 5.10041 5.10772 5.17177 5.20334 5.30074 5.35149 5.38487 5.43473 5.49046 5.51941 5.60820 5.62421 5.71763 5.74827 5.76585 5.90730 5.96822 6.01390 6.44978 6.49099 6.53991 6.79781 7.61607 7.93932 8.41307 8.49856 9.17154 10.80111 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.035357 B = 0.001501 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.737196 B =18647.849587 C =19180.173525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.067 0.933 4 C 0.023 3.977 5 N -0.539 5.539 6 C 0.056 3.944 7 C -0.113 4.113 8 C -0.129 4.129 9 C 0.122 3.878 10 N -0.738 5.738 11 C 0.529 3.471 12 O -0.520 6.520 13 C -0.124 4.124 14 S -0.142 6.142 15 C -0.522 4.522 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.020 3.980 24 C 0.090 3.910 25 H 0.067 0.933 26 C -0.145 4.145 27 O -0.381 6.381 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.042 0.958 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.534 7.053 19.733 35.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.085 0.915 4 C -0.105 4.105 5 N -0.263 5.263 6 C -0.071 4.071 7 C -0.151 4.151 8 C -0.168 4.168 9 C -0.002 4.002 10 N -0.393 5.393 11 C 0.315 3.685 12 O -0.395 6.395 13 C -0.275 4.275 14 S 0.084 5.916 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.108 4.108 24 C 0.032 3.968 25 H 0.085 0.915 26 C -0.203 4.203 27 O -0.301 6.301 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -27.085 8.320 21.057 35.301 hybrid contribution -0.575 -1.488 -1.380 2.109 sum -27.660 6.831 19.677 34.626 Atomic orbital electron populations 1.21750 0.92735 1.02978 1.02762 1.22125 0.94791 0.95650 0.84224 0.91538 1.22825 0.87847 1.00273 0.99528 1.62194 1.08671 1.53040 1.02397 1.22144 0.95661 0.97009 0.92303 1.21491 0.93944 1.02125 0.97576 1.21744 0.94698 1.01524 0.98796 1.21259 0.92576 0.98411 0.87952 1.45978 1.07888 1.59698 1.25698 1.20284 0.81598 0.79452 0.87140 1.90696 1.57448 1.43290 1.48050 1.23282 1.02713 1.03644 0.97856 1.84790 0.98480 1.75287 1.33042 1.22321 0.97429 1.40692 1.06506 0.89401 1.24710 0.98118 0.93941 0.94506 1.69940 1.20543 1.40808 1.20417 0.86730 0.82282 0.81979 0.80844 1.19208 1.19927 1.15921 1.22900 1.01581 0.96121 0.90184 1.22147 0.81152 0.99171 0.94338 0.91517 1.21758 1.01600 1.00674 0.96243 1.87989 1.21018 1.78376 1.42713 0.91890 0.91488 0.90859 0.89621 0.93962 0.90435 0.94595 0.91556 0.90530 0.91072 0.91340 0.91554 0.91705 0.76711 0.88526 0.88466 0.91945 0.93931 0.89151 0.91888 0.90721 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.57 37.15 0.36 -0.37 16 2 C 0.09 0.61 3.43 -26.68 -0.09 0.52 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C 0.02 0.15 4.93 -3.72 -0.02 0.14 16 5 N -0.54 -3.92 4.73 -234.32 -1.11 -5.02 16 6 C 0.06 0.37 4.96 -3.83 -0.02 0.35 16 7 C -0.11 -0.76 5.15 -26.74 -0.14 -0.90 16 8 C -0.13 -0.91 5.33 -26.73 -0.14 -1.06 16 9 C 0.12 1.30 5.67 -4.04 -0.02 1.28 16 10 N -0.74 -9.23 5.56 -60.30 -0.33 -9.57 16 11 C 0.53 9.43 7.85 -10.98 -0.09 9.35 16 12 O -0.52 -11.35 15.86 5.56 0.09 -11.26 16 13 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 14 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 15 C -0.52 -15.09 10.04 30.94 0.31 -14.77 16 16 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 17 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 18 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 19 Si 0.86 21.84 27.74 -169.99 -4.72 17.13 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.24 -6.00 6.74 56.52 0.38 -5.61 16 23 C 0.02 0.14 4.72 -3.71 -0.02 0.13 16 24 C 0.09 0.65 3.42 -26.68 -0.09 0.56 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 C -0.15 -0.83 9.57 37.16 0.36 -0.47 16 27 O -0.38 -3.27 10.11 -35.23 -0.36 -3.62 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 34 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 35 H 0.07 0.46 6.52 -51.93 -0.34 0.12 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.40 3.79 8.47 -40.82 -0.35 3.44 16 42 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.59 6.38 -51.93 -0.33 0.26 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 404.13 15.07 6.09 6.09 Total: -1.00 -34.52 404.13 -10.07 -44.59 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -9.04 Total: -2.17 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 0.52 Total: -4.73 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.67 Total: -40.41 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.27 Total: -14.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.72 Total: 17.13 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.52 -10.07 -44.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443676112.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.752 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds