Wall clock time and date at job start Tue Mar 31 2020 16:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.51008 * 2 1 4 4 C 1.53103 * 109.50552 * 239.91202 * 2 1 3 5 5 N 1.47012 * 109.25822 * 183.17113 * 4 2 1 6 6 C 1.46898 * 110.99820 * 182.39381 * 5 4 2 7 7 C 1.53006 * 109.47006 * 170.00535 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47131 * 180.02562 * 8 7 6 10 10 N 1.46507 * 109.47258 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99901 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00300 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99773 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.46861 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99910 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99828 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99878 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99755 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46939 * 90.00001 * 19 17 15 21 21 H 1.48503 * 109.46841 * 209.99727 * 19 17 15 22 22 H 1.48503 * 109.47194 * 329.99807 * 19 17 15 23 23 C 1.47015 * 110.75211 * 58.62400 * 5 4 2 24 24 C 1.53099 * 109.25444 * 301.38055 * 23 5 4 25 25 H 1.08997 * 109.50715 * 176.78167 * 24 23 5 26 26 C 1.52998 * 109.50784 * 296.91479 * 24 23 5 27 27 O 1.43018 * 109.54186 * 120.11524 * 2 1 3 28 28 H 1.08998 * 109.47144 * 180.08320 * 1 2 3 29 29 H 1.08997 * 109.46670 * 300.08811 * 1 2 3 30 30 H 1.09001 * 109.47087 * 60.08119 * 1 2 3 31 31 H 1.09004 * 109.50331 * 63.24099 * 4 2 1 32 32 H 1.08996 * 109.50932 * 303.11539 * 4 2 1 33 33 H 1.09001 * 109.47392 * 50.00833 * 6 5 4 34 34 H 1.09001 * 109.47520 * 290.00556 * 6 5 4 35 35 H 1.09001 * 109.47002 * 299.99782 * 7 6 5 36 36 H 1.08993 * 109.46955 * 60.00219 * 7 6 5 37 37 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 38 38 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 39 39 H 1.09001 * 109.46997 * 299.99574 * 9 8 7 40 40 H 1.08992 * 109.47534 * 59.99520 * 9 8 7 41 41 H 0.96998 * 119.99933 * 359.97438 * 10 9 8 42 42 H 1.09001 * 109.46980 * 300.00161 * 13 11 10 43 43 H 1.08996 * 109.46805 * 60.00181 * 13 11 10 44 44 H 0.97001 * 119.99673 * 180.02562 * 18 17 15 45 45 H 1.09004 * 109.50787 * 61.30980 * 23 5 4 46 46 H 1.08995 * 109.50754 * 181.45107 * 23 5 4 47 47 H 1.09002 * 109.47517 * 179.77800 * 26 24 23 48 48 H 1.08998 * 109.47186 * 299.78473 * 26 24 23 49 49 H 1.09003 * 109.47096 * 59.78064 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0412 -0.7235 -1.2487 5 7 3.5093 -0.7871 -1.2053 6 6 4.0445 -1.4250 -2.4155 7 6 5.5643 -1.2520 -2.4536 8 6 6.1217 -1.9159 -3.7143 9 6 7.6415 -1.7435 -3.7521 10 7 8.1752 -2.3786 -4.9596 11 6 9.5000 -2.3519 -5.2057 12 8 10.2504 -1.8024 -4.4274 13 6 10.0491 -3.0057 -6.4475 14 16 11.8469 -2.8016 -6.4922 15 6 12.2120 -3.6341 -8.0017 16 1 11.4146 -4.0747 -8.5818 17 6 13.5243 -3.7247 -8.4445 18 7 14.4962 -3.1891 -7.7366 19 14 13.9112 -4.6080 -10.0444 20 1 13.8602 -3.6398 -11.1692 21 1 15.2693 -5.2035 -9.9650 22 1 12.9118 -5.6829 -10.2707 23 6 3.9649 -1.4871 0.0046 24 6 3.4344 -0.7560 1.2407 25 1 3.7217 -1.3033 2.1385 26 6 4.0230 0.6553 1.2914 27 8 2.0084 -0.6762 1.1659 28 1 -0.3633 -1.0276 0.0015 29 1 -0.3632 0.5152 0.8892 30 1 -0.3633 0.5126 -0.8907 31 1 1.7267 -0.1791 -2.1391 32 1 1.6337 -1.7340 -1.2763 33 1 3.6037 -0.9595 -3.2970 34 1 3.7999 -2.4872 -2.4049 35 1 5.8089 -0.1899 -2.4643 36 1 6.0052 -1.7176 -1.5722 37 1 5.8771 -2.9781 -3.7041 38 1 5.6808 -1.4500 -4.5956 39 1 7.8865 -0.6814 -3.7622 40 1 8.0821 -2.2096 -2.8709 41 1 7.5751 -2.8184 -5.5820 42 1 9.8045 -4.0679 -6.4373 43 1 9.6081 -2.5398 -7.3287 44 1 15.4133 -3.2521 -8.0463 45 1 3.5881 -2.5099 -0.0030 46 1 5.0545 -1.5000 0.0291 47 1 3.6420 1.1767 2.1695 48 1 5.1098 0.5939 1.3484 49 1 3.7367 1.2009 0.3923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443676113.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:31 Heat of formation + Delta-G solvation = -96.801493 kcal Electronic energy + Delta-G solvation = -25164.018371 eV Core-core repulsion = 21444.692923 eV Total energy + Delta-G solvation = -3719.325448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.47106 -39.16572 -37.11898 -35.34805 -33.84513 -32.97070 -32.42642 -30.73955 -29.62338 -27.70835 -27.34785 -25.50939 -24.75643 -23.35260 -22.22538 -21.33540 -20.18017 -19.89995 -17.83073 -16.99249 -16.83464 -16.21812 -16.21494 -15.94155 -15.68301 -15.35170 -15.05228 -14.80285 -14.70681 -14.36952 -13.95147 -13.51998 -13.43666 -13.19952 -12.91923 -12.85607 -12.61187 -12.50648 -12.36068 -12.22839 -12.14466 -11.95736 -11.80839 -11.58157 -11.52522 -11.22686 -11.06272 -11.02236 -10.87663 -10.76117 -10.66677 -9.97170 -9.81268 -9.38909 -9.06908 -8.86952 -8.82134 -8.23182 -6.49727 -6.21481 -3.92048 3.02323 3.11632 3.21873 3.22402 3.28340 3.31507 3.37854 3.75518 4.20622 4.27358 4.37616 4.42444 4.56969 4.61809 4.67000 4.73159 4.88405 4.91864 4.96379 4.98850 5.06611 5.09948 5.13652 5.14955 5.20312 5.27251 5.28659 5.34635 5.42829 5.49058 5.53699 5.57975 5.62289 5.65025 5.67593 5.81604 5.88322 5.92653 5.96677 6.02909 6.14321 6.49428 6.52364 6.63882 6.80592 7.59645 7.72538 8.35343 8.63084 9.23790 10.85973 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.041332 B = 0.001460 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.277427 B =19171.264740 C =19630.109761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.024 3.976 5 N -0.534 5.534 6 C 0.056 3.944 7 C -0.113 4.113 8 C -0.129 4.129 9 C 0.122 3.878 10 N -0.740 5.740 11 C 0.530 3.470 12 O -0.518 6.518 13 C -0.153 4.153 14 S -0.061 6.061 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.020 3.980 24 C 0.090 3.910 25 H 0.104 0.896 26 C -0.176 4.176 27 O -0.379 6.379 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.042 0.958 46 H 0.091 0.909 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.629 4.957 14.908 33.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.088 0.912 4 C -0.104 4.104 5 N -0.259 5.259 6 C -0.071 4.071 7 C -0.151 4.151 8 C -0.167 4.167 9 C -0.002 4.002 10 N -0.395 5.395 11 C 0.316 3.684 12 O -0.393 6.393 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.684 4.684 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.108 4.108 24 C 0.032 3.968 25 H 0.122 0.878 26 C -0.233 4.233 27 O -0.298 6.298 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.109 0.891 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -28.117 6.318 16.398 33.157 hybrid contribution -0.989 -2.214 -2.521 3.498 sum -29.106 4.104 13.877 32.505 Atomic orbital electron populations 1.21753 0.92878 1.02928 1.02710 1.22150 0.94642 0.96088 0.84336 0.91196 1.22821 0.87910 1.00226 0.99485 1.62191 1.08531 1.52883 1.02264 1.22149 0.95683 0.96976 0.92335 1.21489 0.93911 1.02123 0.97572 1.21742 0.94799 1.01446 0.98742 1.21246 0.92479 0.98427 0.88065 1.46015 1.08012 1.59885 1.25584 1.20313 0.81431 0.79392 0.87218 1.90700 1.57381 1.43153 1.48019 1.23533 1.06494 1.02987 0.97402 1.85401 0.92393 1.74366 1.31262 1.22874 0.95727 1.41450 1.08380 0.90935 1.24991 0.95147 0.95477 0.97944 1.70020 1.00202 1.42343 1.37712 0.86168 0.77832 0.79471 0.82020 1.20266 1.20739 1.19715 1.22867 1.01650 0.95857 0.90468 1.22267 0.80627 0.96614 0.97313 0.87777 1.22284 1.01489 0.96826 1.02720 1.88042 1.20878 1.78106 1.42782 0.91940 0.91528 0.90925 0.89705 0.94030 0.90493 0.94648 0.90545 0.91555 0.91421 0.91157 0.91616 0.91761 0.76897 0.89260 0.89243 0.92183 0.94022 0.89077 0.92411 0.91503 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.57 37.16 0.36 -0.38 16 2 C 0.09 0.58 3.03 -26.68 -0.08 0.50 16 3 H 0.07 0.48 6.49 -51.93 -0.34 0.14 16 4 C 0.02 0.16 4.93 -3.71 -0.02 0.14 16 5 N -0.53 -3.77 4.09 -234.30 -0.96 -4.73 16 6 C 0.06 0.37 4.96 -3.82 -0.02 0.35 16 7 C -0.11 -0.78 5.15 -26.73 -0.14 -0.92 16 8 C -0.13 -0.96 5.33 -26.73 -0.14 -1.10 16 9 C 0.12 1.38 5.67 -4.04 -0.02 1.36 16 10 N -0.74 -9.82 5.56 -60.29 -0.33 -10.16 16 11 C 0.53 10.00 7.85 -10.98 -0.09 9.92 16 12 O -0.52 -11.96 15.86 5.56 0.09 -11.87 16 13 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 15 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 19 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.02 0.14 4.85 -3.71 -0.02 0.12 16 24 C 0.09 0.63 3.92 -26.68 -0.10 0.53 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 26 C -0.18 -1.16 8.88 37.16 0.33 -0.83 16 27 O -0.38 -3.23 10.29 -35.23 -0.36 -3.59 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 34 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.47 6.52 -51.93 -0.34 0.14 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.59 6.38 -51.93 -0.33 0.26 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.53 6.13 -51.93 -0.32 0.22 16 LS Contribution 402.23 15.07 6.06 6.06 Total: -1.00 -34.75 402.23 -10.35 -45.10 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -8.82 Total: -1.55 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 0.48 Total: -6.26 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.56 Total: -40.39 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.27 Total: -15.47 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.75 -10.35 -45.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443676113.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.705 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds