Wall clock time and date at job start Tue Mar 31 2020 16:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.51008 * 2 1 4 4 C 1.53103 * 109.50552 * 239.91202 * 2 1 3 5 5 N 1.47012 * 109.25822 * 183.17113 * 4 2 1 6 6 C 1.46898 * 110.99820 * 182.39381 * 5 4 2 7 7 C 1.53006 * 109.47006 * 170.00535 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.47131 * 180.02562 * 8 7 6 10 10 N 1.46507 * 109.47258 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99901 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00300 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99773 * 179.97438 * 11 10 9 14 14 S 1.80999 * 109.46861 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99910 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99828 * 359.97438 * 15 14 13 17 17 C 1.38798 * 120.00099 * 180.02562 * 15 14 13 18 18 N 1.31629 * 119.99878 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99755 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46939 * 90.00001 * 19 17 15 21 21 H 1.48503 * 109.46841 * 209.99727 * 19 17 15 22 22 H 1.48503 * 109.47194 * 329.99807 * 19 17 15 23 23 C 1.47015 * 110.75211 * 58.62400 * 5 4 2 24 24 C 1.53099 * 109.25444 * 301.38055 * 23 5 4 25 25 H 1.08997 * 109.50715 * 176.78167 * 24 23 5 26 26 C 1.52998 * 109.50784 * 296.91479 * 24 23 5 27 27 O 1.43018 * 109.54186 * 120.11524 * 2 1 3 28 28 H 1.08998 * 109.47144 * 180.08320 * 1 2 3 29 29 H 1.08997 * 109.46670 * 300.08811 * 1 2 3 30 30 H 1.09001 * 109.47087 * 60.08119 * 1 2 3 31 31 H 1.09004 * 109.50331 * 63.24099 * 4 2 1 32 32 H 1.08996 * 109.50932 * 303.11539 * 4 2 1 33 33 H 1.09001 * 109.47392 * 50.00833 * 6 5 4 34 34 H 1.09001 * 109.47520 * 290.00556 * 6 5 4 35 35 H 1.09001 * 109.47002 * 299.99782 * 7 6 5 36 36 H 1.08993 * 109.46955 * 60.00219 * 7 6 5 37 37 H 1.09001 * 109.47289 * 299.99953 * 8 7 6 38 38 H 1.09004 * 109.47261 * 59.99697 * 8 7 6 39 39 H 1.09001 * 109.46997 * 299.99574 * 9 8 7 40 40 H 1.08992 * 109.47534 * 59.99520 * 9 8 7 41 41 H 0.96998 * 119.99933 * 359.97438 * 10 9 8 42 42 H 1.09001 * 109.46980 * 300.00161 * 13 11 10 43 43 H 1.08996 * 109.46805 * 60.00181 * 13 11 10 44 44 H 0.97001 * 119.99673 * 180.02562 * 18 17 15 45 45 H 1.09004 * 109.50787 * 61.30980 * 23 5 4 46 46 H 1.08995 * 109.50754 * 181.45107 * 23 5 4 47 47 H 1.09002 * 109.47517 * 179.77800 * 26 24 23 48 48 H 1.08998 * 109.47186 * 299.78473 * 26 24 23 49 49 H 1.09003 * 109.47096 * 59.78064 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0273 0.0000 4 6 2.0412 -0.7235 -1.2487 5 7 3.5093 -0.7871 -1.2053 6 6 4.0445 -1.4250 -2.4155 7 6 5.5643 -1.2520 -2.4536 8 6 6.1217 -1.9159 -3.7143 9 6 7.6415 -1.7435 -3.7521 10 7 8.1752 -2.3786 -4.9596 11 6 9.5000 -2.3519 -5.2057 12 8 10.2504 -1.8024 -4.4274 13 6 10.0491 -3.0057 -6.4475 14 16 11.8469 -2.8016 -6.4922 15 6 12.2120 -3.6341 -8.0017 16 1 11.4146 -4.0747 -8.5818 17 6 13.5243 -3.7247 -8.4445 18 7 14.4962 -3.1891 -7.7366 19 14 13.9112 -4.6080 -10.0444 20 1 13.8602 -3.6398 -11.1692 21 1 15.2693 -5.2035 -9.9650 22 1 12.9118 -5.6829 -10.2707 23 6 3.9649 -1.4871 0.0046 24 6 3.4344 -0.7560 1.2407 25 1 3.7217 -1.3033 2.1385 26 6 4.0230 0.6553 1.2914 27 8 2.0084 -0.6762 1.1659 28 1 -0.3633 -1.0276 0.0015 29 1 -0.3632 0.5152 0.8892 30 1 -0.3633 0.5126 -0.8907 31 1 1.7267 -0.1791 -2.1391 32 1 1.6337 -1.7340 -1.2763 33 1 3.6037 -0.9595 -3.2970 34 1 3.7999 -2.4872 -2.4049 35 1 5.8089 -0.1899 -2.4643 36 1 6.0052 -1.7176 -1.5722 37 1 5.8771 -2.9781 -3.7041 38 1 5.6808 -1.4500 -4.5956 39 1 7.8865 -0.6814 -3.7622 40 1 8.0821 -2.2096 -2.8709 41 1 7.5751 -2.8184 -5.5820 42 1 9.8045 -4.0679 -6.4373 43 1 9.6081 -2.5398 -7.3287 44 1 15.4133 -3.2521 -8.0463 45 1 3.5881 -2.5099 -0.0030 46 1 5.0545 -1.5000 0.0291 47 1 3.6420 1.1767 2.1695 48 1 5.1098 0.5939 1.3484 49 1 3.7367 1.2009 0.3923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443676113.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:30 Heat of formation + Delta-G solvation = -121.308690 kcal Electronic energy + Delta-G solvation = -25165.081083 eV Core-core repulsion = 21444.692923 eV Total energy + Delta-G solvation = -3720.388160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.01298 -40.59168 -37.78355 -36.33284 -34.58539 -34.34789 -33.91678 -31.52816 -30.78979 -28.60421 -27.86046 -27.63943 -25.48675 -23.87663 -22.95983 -22.13402 -21.39362 -20.43040 -19.81460 -17.80039 -17.56161 -17.37079 -17.10984 -16.98930 -16.87567 -16.42222 -16.16860 -15.82665 -15.67358 -15.50748 -15.03996 -14.70411 -14.45276 -14.33760 -13.95549 -13.55953 -13.43492 -13.30157 -13.16574 -13.09149 -12.89446 -12.85951 -12.76793 -12.69622 -12.57707 -12.45886 -12.33281 -12.07391 -11.86091 -11.71631 -11.44319 -11.20798 -11.14134 -10.95573 -10.51797 -10.27618 -10.10995 -9.35670 -8.67012 -8.34511 -6.12937 1.27434 1.42920 1.47659 1.58062 1.61487 2.26222 2.30261 2.72376 2.86371 2.99723 3.32757 3.73719 3.83908 3.87597 3.95336 3.99177 4.08801 4.10770 4.20220 4.29211 4.31175 4.37175 4.41759 4.44866 4.51116 4.52632 4.62203 4.68822 4.70338 4.74969 4.78380 4.81570 4.88994 4.98160 5.02776 5.05041 5.14708 5.24929 5.30292 5.36000 5.38969 5.41931 5.47913 5.96705 6.01552 6.19941 6.27867 6.52544 7.06745 7.25758 8.74784 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.041332 B = 0.001460 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.277427 B =19171.264740 C =19630.109761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.067 0.933 4 C 0.026 3.974 5 N -0.541 5.541 6 C 0.060 3.940 7 C -0.107 4.107 8 C -0.114 4.114 9 C 0.120 3.880 10 N -0.713 5.713 11 C 0.531 3.469 12 O -0.569 6.569 13 C -0.129 4.129 14 S -0.154 6.154 15 C -0.547 4.547 16 H 0.083 0.917 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.258 1.258 23 C 0.022 3.978 24 C 0.085 3.915 25 H 0.111 0.889 26 C -0.169 4.169 27 O -0.398 6.398 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.417 0.583 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.271 0.729 45 H 0.035 0.965 46 H 0.094 0.906 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.874 4.115 13.467 34.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.085 0.915 4 C -0.102 4.102 5 N -0.266 5.266 6 C -0.067 4.067 7 C -0.145 4.145 8 C -0.152 4.152 9 C -0.004 4.004 10 N -0.367 5.367 11 C 0.316 3.684 12 O -0.447 6.447 13 C -0.281 4.281 14 S 0.073 5.927 15 C -0.695 4.695 16 H 0.102 0.898 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.182 1.182 23 C -0.106 4.106 24 C 0.027 3.973 25 H 0.129 0.871 26 C -0.227 4.227 27 O -0.317 6.317 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.112 0.888 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -30.435 5.465 14.950 34.346 hybrid contribution -0.414 -1.913 -1.987 2.790 sum -30.850 3.552 12.963 33.650 Atomic orbital electron populations 1.21757 0.91751 1.02915 1.03497 1.22279 0.95571 0.95766 0.83991 0.91513 1.22828 0.87507 1.00022 0.99848 1.62201 1.08952 1.52991 1.02425 1.22112 0.95086 0.97110 0.92441 1.21410 0.94360 1.01562 0.97199 1.21635 0.91503 1.02505 0.99573 1.21401 0.95027 0.97393 0.86535 1.45775 1.06200 1.58486 1.26259 1.20106 0.82934 0.79012 0.86299 1.90690 1.59058 1.45567 1.49421 1.23377 1.00704 1.04754 0.99228 1.85595 0.99828 1.75098 1.32196 1.23216 0.96488 1.41441 1.08363 0.89845 1.26134 0.94847 0.96130 1.02005 1.70187 1.00729 1.43910 1.39965 0.84943 0.77852 0.78371 0.76737 1.19283 1.20315 1.18170 1.22835 1.01757 0.95433 0.90571 1.22373 0.80211 0.96915 0.97751 0.87086 1.22214 1.01665 0.96508 1.02268 1.88020 1.21585 1.78415 1.43713 0.92298 0.91726 0.89180 0.88454 0.94598 0.89604 0.94519 0.91245 0.91885 0.90139 0.89704 0.92704 0.92813 0.74577 0.87166 0.87111 0.91992 0.94695 0.88778 0.92421 0.91096 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.57 71.98 0.69 -0.60 16 2 C 0.08 1.03 3.03 30.63 0.09 1.12 16 3 H 0.07 0.87 6.49 -2.39 -0.02 0.85 16 4 C 0.03 0.30 4.93 86.32 0.43 0.73 16 5 N -0.54 -6.89 4.09 -895.19 -3.66 -10.55 16 6 C 0.06 0.65 4.96 86.31 0.43 1.08 16 7 C -0.11 -1.28 5.15 30.60 0.16 -1.13 16 8 C -0.11 -1.38 5.33 30.59 0.16 -1.22 16 9 C 0.12 2.52 5.67 86.38 0.49 3.01 16 10 N -0.71 -17.37 5.56 -463.06 -2.57 -19.94 16 11 C 0.53 19.58 7.85 87.66 0.69 20.27 16 12 O -0.57 -26.72 15.86 -3.03 -0.05 -26.76 16 13 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 14 S -0.15 -8.61 20.57 -56.49 -1.16 -9.78 16 15 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 16 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 17 C 0.01 0.77 5.49 84.86 0.47 1.24 16 18 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 19 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 23 C 0.02 0.29 4.85 86.31 0.42 0.71 16 24 C 0.09 1.15 3.92 30.63 0.12 1.27 16 25 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 26 C -0.17 -2.15 8.88 71.98 0.64 -1.51 16 27 O -0.40 -6.59 10.29 -148.98 -1.53 -8.12 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.87 8.09 -2.38 -0.02 0.85 16 32 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.80 8.04 -2.39 -0.02 0.78 16 34 H 0.04 0.40 8.12 -2.39 -0.02 0.38 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.81 6.52 -2.39 -0.02 0.80 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.42 7.00 8.47 -92.71 -0.79 6.22 16 42 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 43 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 46 H 0.09 1.15 6.38 -2.39 -0.02 1.13 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 0.92 6.13 -2.39 -0.01 0.90 16 Total: -1.00 -77.31 402.23 -0.67 -77.98 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.13 Total: 17.84 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 5.86 Total: -10.31 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -5.95 Total: -86.34 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.58 Total: -34.89 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.78 kcal Total: -77.31 -0.67 -77.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443676113.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.328 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds