Wall clock time and date at job start Tue Mar 31 2020 18:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 111.00092 * 2 1 4 4 C 1.46900 * 110.99622 * 123.94743 * 2 1 3 5 5 C 1.53002 * 109.47154 * 163.79673 * 4 2 1 6 6 C 1.53039 * 109.46307 * 294.48342 * 5 4 2 7 7 C 1.53185 * 109.31251 * 178.59953 * 6 5 4 8 8 N 1.46924 * 108.76936 * 54.65332 * 7 6 5 9 9 S 1.65601 * 120.63455 * 126.35864 * 8 7 6 10 10 O 1.42100 * 104.27608 * 26.09418 * 9 8 7 11 11 O 1.42101 * 104.28189 * 153.95298 * 9 8 7 12 12 C 1.81397 * 104.45028 * 270.02710 * 9 8 7 13 13 C 1.53004 * 109.47417 * 174.67750 * 12 9 8 14 14 C 1.50703 * 115.54628 * 39.85611 * 13 12 9 15 15 H 1.08007 * 119.99942 * 264.93952 * 14 13 12 16 16 C 1.37871 * 120.00222 * 84.93897 * 14 13 12 17 17 N 1.31513 * 119.99873 * 1.89833 * 16 14 13 18 18 Si 1.86805 * 120.00041 * 181.89773 * 16 14 13 19 19 H 1.48497 * 109.46822 * 60.00264 * 18 16 14 20 20 H 1.48501 * 109.46945 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.46895 * 299.99728 * 18 16 14 22 22 C 1.52995 * 117.50161 * 254.15038 * 13 12 9 23 23 C 1.52997 * 117.50040 * 185.52540 * 13 12 9 24 24 C 1.46928 * 118.73836 * 306.38382 * 8 7 6 25 25 C 1.53047 * 109.46076 * 174.42173 * 5 4 2 26 26 H 1.09007 * 109.46716 * 55.32802 * 1 2 3 27 27 H 1.08997 * 109.47488 * 295.33401 * 1 2 3 28 28 H 1.08996 * 109.47608 * 175.32467 * 1 2 3 29 29 H 1.09000 * 109.47580 * 63.95322 * 3 2 1 30 30 H 1.09001 * 109.46803 * 183.95456 * 3 2 1 31 31 H 1.09003 * 109.46639 * 303.94563 * 3 2 1 32 32 H 1.08997 * 109.47572 * 283.80066 * 4 2 1 33 33 H 1.09002 * 109.47334 * 43.80347 * 4 2 1 34 34 H 1.09003 * 109.45502 * 54.45385 * 5 4 2 35 35 H 1.08998 * 109.49267 * 298.56455 * 6 5 4 36 36 H 1.08997 * 109.49579 * 58.65970 * 6 5 4 37 37 H 1.09004 * 109.60193 * 294.86577 * 7 6 5 38 38 H 1.09004 * 109.70196 * 174.50173 * 7 6 5 39 39 H 1.09004 * 109.47339 * 294.67986 * 12 9 8 40 40 H 1.09001 * 109.47476 * 54.67768 * 12 9 8 41 41 H 0.97006 * 120.00066 * 185.02369 * 17 16 14 42 42 H 1.09005 * 117.49566 * 359.97438 * 22 13 12 43 43 H 1.08993 * 117.50247 * 145.01871 * 22 13 12 44 44 H 1.09006 * 117.49327 * 214.97778 * 23 13 12 45 45 H 1.08993 * 117.50081 * 0.02562 * 23 13 12 46 46 H 1.08993 * 109.58737 * 293.81941 * 24 8 7 47 47 H 1.09001 * 109.70585 * 173.46256 * 24 8 7 48 48 H 1.08993 * 109.49710 * 301.34293 * 25 5 4 49 49 H 1.08997 * 109.49325 * 61.40568 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 3.4713 -1.0885 0.8962 6 6 3.5978 -2.0294 -0.3042 7 6 5.0787 -2.3222 -0.5645 8 7 5.6832 -2.8370 0.6717 9 16 6.5077 -4.2732 0.6733 10 8 6.9688 -4.4140 -0.6634 11 8 7.4216 -4.1515 1.7546 12 6 5.2439 -5.5202 1.0453 13 6 5.8604 -6.9170 0.9446 14 6 7.2570 -7.0521 1.4944 15 1 8.1078 -6.9657 0.8347 16 6 7.4487 -7.2859 2.8396 17 7 6.4123 -7.4283 3.6365 18 14 9.1807 -7.4006 3.5301 19 1 9.8979 -6.1242 3.2821 20 1 9.1150 -7.6550 4.9917 21 1 9.9058 -8.5132 2.8657 22 6 5.4965 -7.7635 -0.2768 23 6 4.9222 -8.1159 1.0968 24 6 5.5419 -2.0537 1.9067 25 6 4.0557 -1.7636 2.1392 26 1 -0.3633 0.5847 -0.8452 27 1 -0.3634 0.4397 0.9288 28 1 -0.3634 -1.0242 -0.0838 29 1 1.7044 1.8724 0.9233 30 1 3.0828 1.3432 -0.0709 31 1 1.5899 1.9162 -0.8526 32 1 1.8967 -0.1765 2.0493 33 1 1.4331 -1.6938 1.2423 34 1 4.0161 -0.1664 0.6938 35 1 3.0741 -2.9616 -0.0925 36 1 3.1603 -1.5575 -1.1839 37 1 5.5856 -1.4050 -0.8646 38 1 5.1726 -3.0670 -1.3549 39 1 4.8639 -5.3626 2.0547 40 1 4.4252 -5.4322 0.3310 41 1 6.5450 -7.5199 4.5931 42 1 4.8176 -7.3254 -1.0085 43 1 6.2674 -8.4182 -0.6830 44 1 5.3153 -9.0026 1.5942 45 1 3.8657 -7.9097 1.2682 46 1 6.0864 -1.1147 1.8081 47 1 5.9396 -2.6201 2.7487 48 1 3.9441 -1.1025 2.9986 49 1 3.5273 -2.6980 2.3280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451360244.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:35 Heat of formation + Delta-G solvation = -48.575415 kcal Electronic energy + Delta-G solvation = -28251.656265 eV Core-core repulsion = 24534.422057 eV Total energy + Delta-G solvation = -3717.234208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.09606 -36.98958 -36.67756 -36.13737 -34.87610 -32.73052 -32.00514 -30.92565 -28.14329 -27.85873 -27.40345 -25.43715 -23.67612 -23.13476 -21.35153 -21.14078 -20.14446 -19.28967 -18.21749 -17.01900 -16.36751 -15.73604 -15.60825 -15.39602 -15.07003 -15.03301 -14.59264 -14.22825 -14.06191 -13.82251 -13.68667 -13.33032 -13.14270 -12.96817 -12.63709 -12.43747 -12.17338 -12.00413 -11.94316 -11.77208 -11.74363 -11.21730 -11.17687 -11.06823 -10.98810 -10.94201 -10.78972 -10.70078 -10.48730 -10.34239 -10.32099 -10.21289 -10.03198 -9.60488 -9.02227 -8.66090 -8.57923 -8.45741 -8.03179 -6.12239 -4.27838 1.20883 3.37939 3.39673 3.50714 3.53276 3.70208 4.44579 4.59039 4.72996 4.82617 4.85386 4.91996 5.00850 5.07427 5.16626 5.18680 5.21740 5.23023 5.33324 5.37070 5.41595 5.49014 5.51589 5.56964 5.60906 5.69770 5.74969 5.84121 5.92798 5.95661 5.97623 5.99434 6.16071 6.20794 6.33101 6.39373 6.42751 6.52356 6.66810 6.74370 6.77518 6.79174 6.97990 7.04651 7.22895 7.47685 7.80883 8.22052 8.80892 9.49713 10.95047 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.003585 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.155945 B = 7808.813064 C = 8080.230128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.022 3.978 4 C 0.057 3.943 5 C -0.079 4.079 6 C -0.122 4.122 7 C 0.120 3.880 8 N -1.014 6.014 9 S 2.623 3.377 10 O -0.973 6.973 11 O -0.942 6.942 12 C -0.559 4.559 13 C 0.047 3.953 14 C -0.540 4.540 15 H 0.068 0.932 16 C 0.097 3.903 17 N -0.869 5.869 18 Si 0.887 3.113 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.206 4.206 23 C -0.139 4.139 24 C 0.124 3.876 25 C -0.132 4.132 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.264 0.736 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.069 0.931 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.671 15.281 -4.260 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.126 4.126 4 C -0.070 4.070 5 C -0.098 4.098 6 C -0.161 4.161 7 C -0.005 4.005 8 N -0.850 5.850 9 S 2.720 3.280 10 O -0.964 6.964 11 O -0.932 6.932 12 C -0.692 4.692 13 C 0.045 3.955 14 C -0.577 4.577 15 H 0.086 0.914 16 C -0.110 4.110 17 N -0.504 5.504 18 Si 0.714 3.286 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.243 4.243 23 C -0.178 4.178 24 C -0.002 4.002 25 C -0.172 4.172 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.111 0.889 48 H 0.088 0.912 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.634 14.914 -4.670 18.903 hybrid contribution -0.342 0.214 1.459 1.514 sum -10.976 15.128 -3.211 18.964 Atomic orbital electron populations 1.22380 0.87476 1.02321 1.00199 1.61939 1.07597 1.13786 1.43547 1.22432 1.01234 0.88763 1.00161 1.22254 0.96156 0.97842 0.90786 1.21082 0.94263 0.98859 0.95553 1.21891 0.96002 0.99478 0.98701 1.21350 0.92943 1.00229 0.86010 1.58290 1.73298 1.38988 1.14409 1.04749 0.76050 0.73030 0.74150 1.93463 1.79034 1.85976 1.37926 1.93520 1.58964 1.84641 1.56094 1.30026 1.15047 1.14556 1.09534 1.18189 0.95220 0.85054 0.97006 1.20572 0.89512 1.53743 0.93865 0.91437 1.24880 0.97216 0.92062 0.96806 1.69981 1.29919 1.46379 1.04100 0.86691 0.84840 0.79373 0.77719 1.18796 1.21036 1.20000 1.23125 1.03495 1.06402 0.91282 1.22493 0.96474 1.01481 0.97316 1.21270 0.95503 0.96689 0.86693 1.21990 0.96626 1.01278 0.97306 0.91511 0.95900 0.91297 0.95870 0.91018 0.91601 0.94719 0.90715 0.91044 0.91841 0.89912 0.91847 0.89421 0.85883 0.88624 0.92617 0.91339 0.89769 0.89433 0.91805 0.91799 0.88866 0.91209 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.53 60.06 0.57 0.76 16 2 N -0.55 -4.83 4.43 -251.26 -1.11 -5.94 16 3 C 0.02 0.17 9.38 60.07 0.56 0.73 16 4 C 0.06 0.53 4.36 -3.82 -0.02 0.51 16 5 C -0.08 -0.80 2.17 -90.57 -0.20 -0.99 16 6 C -0.12 -1.37 5.27 -26.62 -0.14 -1.51 16 7 C 0.12 1.64 6.32 -3.72 -0.02 1.61 16 8 N -1.01 -16.42 3.22 -113.52 -0.37 -16.79 16 9 S 2.62 56.48 4.61 -107.50 -0.50 55.99 16 10 O -0.97 -22.93 16.72 -57.54 -0.96 -23.90 16 11 O -0.94 -23.56 15.81 -57.54 -0.91 -24.47 16 12 C -0.56 -11.91 6.29 37.16 0.23 -11.68 16 13 C 0.05 1.17 1.71 -155.66 -0.27 0.91 16 14 C -0.54 -15.04 6.85 -34.44 -0.24 -15.28 16 15 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 16 C 0.10 2.71 5.42 -17.82 -0.10 2.61 16 17 N -0.87 -24.24 12.71 55.43 0.70 -23.53 16 18 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 19 H -0.26 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 22 C -0.21 -4.57 9.88 -26.73 -0.26 -4.83 16 23 C -0.14 -3.22 9.24 -26.73 -0.25 -3.47 16 24 C 0.12 1.74 6.31 -3.71 -0.02 1.71 16 25 C -0.13 -1.47 5.36 -26.61 -0.14 -1.62 16 26 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 27 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.51 8.10 -51.93 -0.42 0.08 16 29 H 0.02 0.17 8.11 -51.93 -0.42 -0.25 16 30 H 0.07 0.55 6.62 -51.93 -0.34 0.21 16 31 H 0.07 0.45 8.11 -51.93 -0.42 0.02 16 32 H 0.03 0.31 8.02 -51.93 -0.42 -0.11 16 33 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 34 H 0.07 0.71 6.58 -51.93 -0.34 0.37 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.25 7.09 -51.93 -0.37 0.88 16 39 H 0.12 2.63 8.14 -51.92 -0.42 2.20 16 40 H 0.10 1.72 7.95 -51.92 -0.41 1.31 16 41 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 42 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 43 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 44 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 45 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.09 1.44 7.10 -51.93 -0.37 1.07 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -32.49 393.59 -11.46 -43.94 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.94 Total: 2.19 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: -0.28 Total: -30.54 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.77 Total: -46.26 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -1.87 Total: -48.37 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 56.48 SS G_CDS: -0.50 Total: 55.99 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.49 -11.46 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451360244.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.631 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds