Wall clock time and date at job start Tue Mar 31 2020 15:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47315 * 2 1 4 4 H 1.08999 * 109.78698 * 309.49816 * 3 2 1 5 5 C 1.53241 * 109.62743 * 69.98058 * 3 2 1 6 6 N 1.46899 * 109.33909 * 173.54382 * 5 3 2 7 7 C 1.46909 * 111.00003 * 172.74915 * 6 5 3 8 8 C 1.52996 * 109.46906 * 190.34757 * 7 6 5 9 9 C 1.46904 * 111.26588 * 296.89224 * 6 5 3 10 10 C 1.53238 * 109.36048 * 63.09498 * 9 6 5 11 11 N 1.47079 * 109.63050 * 189.01028 * 3 2 1 12 12 S 1.65596 * 120.88173 * 9.07582 * 11 3 2 13 13 O 1.42104 * 104.27663 * 183.73497 * 12 11 3 14 14 O 1.42096 * 104.27951 * 311.59237 * 12 11 3 15 15 C 1.81406 * 104.44922 * 67.66329 * 12 11 3 16 16 C 1.52997 * 109.47086 * 170.30420 * 15 12 11 17 17 C 1.50698 * 115.54933 * 53.21557 * 16 15 12 18 18 H 1.07996 * 120.00174 * 264.25258 * 17 16 15 19 19 C 1.37882 * 119.99833 * 84.25816 * 17 16 15 20 20 N 1.31515 * 119.99769 * 359.40501 * 19 17 16 21 21 Si 1.86804 * 119.99839 * 179.40335 * 19 17 16 22 22 H 1.48503 * 109.46754 * 90.00239 * 21 19 17 23 23 H 1.48500 * 109.46767 * 209.99821 * 21 19 17 24 24 H 1.48494 * 109.47280 * 329.99926 * 21 19 17 25 25 C 1.53000 * 117.49782 * 267.54824 * 16 15 12 26 26 C 1.53005 * 117.49940 * 198.88740 * 16 15 12 27 27 H 1.08997 * 109.47389 * 178.89180 * 1 2 3 28 28 H 1.08997 * 109.47127 * 298.89456 * 1 2 3 29 29 H 1.09008 * 109.47037 * 58.89209 * 1 2 3 30 30 H 1.09002 * 109.47401 * 240.00250 * 2 1 3 31 31 H 1.08994 * 109.47396 * 120.00023 * 2 1 3 32 32 H 1.08998 * 109.49611 * 53.58078 * 5 3 2 33 33 H 1.09006 * 109.49316 * 293.50183 * 5 3 2 34 34 H 1.09000 * 109.46448 * 310.34543 * 7 6 5 35 35 H 1.08998 * 109.47121 * 70.34321 * 7 6 5 36 36 H 1.09003 * 109.47134 * 179.97438 * 8 7 6 37 37 H 1.08998 * 109.46896 * 299.99346 * 8 7 6 38 38 H 1.08998 * 109.47587 * 59.99849 * 8 7 6 39 39 H 1.09005 * 109.48924 * 183.06431 * 9 6 5 40 40 H 1.08994 * 109.49700 * 303.11731 * 9 6 5 41 41 H 1.09005 * 109.62605 * 65.89130 * 10 9 6 42 42 H 1.09004 * 109.62687 * 186.46755 * 10 9 6 43 43 H 1.08993 * 109.47178 * 290.30325 * 15 12 11 44 44 H 1.09007 * 109.47013 * 50.30705 * 15 12 11 45 45 H 0.97006 * 119.99455 * 185.03811 * 20 19 17 46 46 H 1.08994 * 117.50072 * 359.97438 * 25 16 15 47 47 H 1.09004 * 117.50117 * 145.02414 * 25 16 15 48 48 H 1.08995 * 117.49847 * 214.98073 * 26 16 15 49 49 H 1.09001 * 117.49547 * 359.97353 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5480 2.0078 -0.7914 5 6 1.7457 2.0925 1.3562 6 7 2.3722 3.4203 1.4053 7 6 1.9720 4.1466 2.6180 8 6 2.4272 5.6036 2.5134 9 6 3.8348 3.3233 1.3084 10 6 4.2152 2.7235 -0.0495 11 7 3.4947 1.4522 -0.2170 12 16 4.3006 0.0681 -0.6376 13 8 5.6679 0.4540 -0.6673 14 8 3.8337 -0.9042 0.2875 15 6 3.7092 -0.3094 -2.3105 16 6 4.5570 -1.4332 -2.9096 17 6 4.6701 -2.6800 -2.0708 18 1 5.5206 -2.8176 -1.4197 19 6 3.6875 -3.6453 -2.1347 20 7 2.6460 -3.4725 -2.9189 21 14 3.8359 -5.1984 -1.1074 22 1 3.1905 -4.9824 0.2125 23 1 3.1642 -6.3218 -1.8089 24 1 5.2707 -5.5257 -0.9092 25 6 5.7740 -1.0312 -3.7453 26 6 4.5306 -1.6045 -4.4298 27 1 -0.3634 -1.0274 -0.0199 28 1 -0.3633 0.4966 0.8997 29 1 -0.3633 0.5310 -0.8799 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.1506 1.4695 2.1537 33 1 0.6680 2.1938 1.4848 34 1 0.8875 4.1113 2.7213 35 1 2.4353 3.6828 3.4888 36 1 2.1299 6.1426 3.4129 37 1 3.5117 5.6388 2.4100 38 1 1.9639 6.0674 1.6426 39 1 4.2722 4.3173 1.4023 40 1 4.2107 2.6836 2.1068 41 1 3.9325 3.4119 -0.8460 42 1 5.2897 2.5430 -0.0819 43 1 2.6671 -0.6254 -2.2647 44 1 3.7920 0.5805 -2.9346 45 1 1.9199 -4.1156 -2.9095 46 1 5.9704 0.0338 -3.8685 47 1 6.6563 -1.6689 -3.6887 48 1 4.5953 -2.6189 -4.8232 49 1 3.9088 -0.9167 -5.0030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451932016.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:06 Heat of formation + Delta-G solvation = -35.000466 kcal Electronic energy + Delta-G solvation = -29058.911965 eV Core-core repulsion = 25342.266411 eV Total energy + Delta-G solvation = -3716.645554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.29864 -36.73981 -36.56805 -35.60815 -34.93200 -33.31322 -32.04139 -30.71073 -29.46377 -28.25704 -25.81162 -25.40681 -24.37483 -22.51166 -21.19136 -20.93132 -20.51657 -19.42853 -18.15831 -16.90432 -16.51998 -15.89735 -15.53107 -15.20188 -15.13206 -14.92962 -14.68464 -14.31716 -14.18357 -13.75251 -13.61115 -13.29449 -13.12839 -12.95148 -12.30861 -12.24992 -12.03891 -11.96127 -11.80078 -11.75887 -11.49412 -11.34091 -11.22707 -11.07719 -11.02147 -10.96606 -10.89020 -10.68058 -10.53195 -10.40992 -10.32327 -10.05481 -9.93065 -9.65862 -9.02407 -8.84579 -8.52548 -8.33556 -8.04584 -6.14693 -4.28273 1.09769 3.32101 3.35536 3.38245 3.42686 3.78757 4.38695 4.58788 4.67751 4.77601 4.90474 5.01513 5.09450 5.13235 5.15377 5.23221 5.29760 5.30174 5.34396 5.42537 5.54235 5.58776 5.60680 5.65896 5.70070 5.77429 5.80105 5.86750 5.92741 6.00056 6.02090 6.11657 6.22020 6.29096 6.33692 6.34994 6.46400 6.63154 6.71339 6.76521 6.91655 7.00094 7.01869 7.02945 7.23262 7.43487 7.78376 8.19490 8.78786 9.46134 10.92677 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.004520 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.051579 B = 6193.786939 C = 6848.278044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.172 4.172 3 C 0.164 3.836 4 H 0.078 0.922 5 C 0.050 3.950 6 N -0.538 5.538 7 C 0.050 3.950 8 C -0.148 4.148 9 C 0.041 3.959 10 C 0.121 3.879 11 N -1.013 6.013 12 S 2.615 3.385 13 O -0.975 6.975 14 O -0.945 6.945 15 C -0.561 4.561 16 C 0.045 3.955 17 C -0.526 4.526 18 H 0.067 0.933 19 C 0.089 3.911 20 N -0.871 5.871 21 Si 0.888 3.112 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.206 4.206 26 C -0.139 4.139 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.098 0.902 45 H 0.263 0.737 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.400 14.854 6.619 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.210 4.210 3 C 0.058 3.942 4 H 0.096 0.904 5 C -0.079 4.079 6 N -0.263 5.263 7 C -0.078 4.078 8 C -0.206 4.206 9 C -0.088 4.088 10 C -0.004 4.004 11 N -0.850 5.850 12 S 2.714 3.286 13 O -0.966 6.966 14 O -0.935 6.935 15 C -0.693 4.693 16 C 0.043 3.957 17 C -0.563 4.563 18 H 0.085 0.915 19 C -0.117 4.117 20 N -0.506 5.506 21 Si 0.715 3.285 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.195 1.195 25 C -0.243 4.243 26 C -0.178 4.178 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.119 0.881 43 H 0.152 0.848 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.075 14.568 6.686 16.539 hybrid contribution -0.276 -1.060 0.583 1.240 sum -4.351 13.509 7.269 15.945 Atomic orbital electron populations 1.21676 0.94654 1.02325 1.01288 1.22582 0.97448 0.94512 1.06493 1.21029 0.79834 0.96615 0.96730 0.90419 1.22511 0.99387 0.88728 0.97313 1.61932 1.08363 1.17986 1.37978 1.22070 1.00585 0.94543 0.90614 1.21803 1.01514 0.95407 1.01880 1.22510 0.88058 1.00756 0.97525 1.21474 0.97469 0.84932 0.96566 1.58350 1.16241 1.25001 1.85388 1.04949 0.73483 0.72019 0.78102 1.93440 1.32836 1.82069 1.88237 1.93536 1.81052 1.59182 1.59753 1.30193 1.12152 1.06279 1.20712 1.18224 0.93391 0.92411 0.91683 1.20552 1.08621 1.01622 1.25516 0.91529 1.24911 0.95008 0.97882 0.93869 1.69988 1.07707 1.36768 1.36131 0.86618 0.78861 0.82228 0.80783 1.19702 1.21083 1.19466 1.23140 0.93525 0.98890 1.08730 1.22526 0.98493 1.00337 0.96421 0.91924 0.92906 0.92695 0.89967 0.87755 0.93972 0.89838 0.90834 0.95041 0.92489 0.92597 0.91811 0.89598 0.94405 0.91197 0.88132 0.84794 0.88376 0.92692 0.91136 0.89644 0.89440 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.72 37.16 0.36 -1.49 16 2 C -0.17 -2.81 3.87 -26.73 -0.10 -2.92 16 3 C 0.16 2.40 3.07 -67.49 -0.21 2.20 16 4 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 5 C 0.05 0.64 4.60 -3.70 -0.02 0.62 16 6 N -0.54 -6.35 4.63 -234.31 -1.08 -7.44 16 7 C 0.05 0.47 5.68 -3.82 -0.02 0.45 16 8 C -0.15 -1.18 9.85 37.16 0.37 -0.82 16 9 C 0.04 0.50 5.46 -3.70 -0.02 0.48 16 10 C 0.12 1.70 6.65 -3.60 -0.02 1.68 16 11 N -1.01 -16.70 3.23 -106.19 -0.34 -17.04 16 12 S 2.62 55.16 4.25 -107.50 -0.46 54.71 16 13 O -0.98 -22.32 16.25 -57.54 -0.94 -23.26 16 14 O -0.95 -22.54 14.08 -57.54 -0.81 -23.35 16 15 C -0.56 -11.96 5.73 37.16 0.21 -11.75 16 16 C 0.05 1.11 1.51 -155.66 -0.23 0.87 16 17 C -0.53 -14.41 7.66 -34.44 -0.26 -14.68 16 18 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 19 C 0.09 2.42 5.42 -17.82 -0.10 2.33 16 20 N -0.87 -23.70 12.80 55.43 0.71 -22.99 16 21 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.21 -4.56 9.92 -26.69 -0.26 -4.83 16 26 C -0.14 -3.19 9.36 -26.69 -0.25 -3.44 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.57 6.96 -51.93 -0.36 0.21 16 29 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.08 1.55 3.96 -51.93 -0.21 1.35 16 31 H 0.10 1.90 6.56 -51.93 -0.34 1.56 16 32 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.08 0.90 6.93 -51.93 -0.36 0.54 16 34 H 0.07 0.64 7.96 -51.93 -0.41 0.23 16 35 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.44 6.41 -51.93 -0.33 0.11 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.85 6.18 -51.93 -0.32 0.53 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.10 1.47 6.59 -51.93 -0.34 1.13 16 43 H 0.13 2.90 5.76 -51.93 -0.30 2.60 16 44 H 0.10 1.79 8.08 -51.92 -0.42 1.37 16 45 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 48 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 49 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -31.22 381.89 -11.18 -42.40 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.43 Total: 5.95 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: -0.56 Total: -31.28 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.72 Total: -47.47 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -1.75 Total: -46.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 55.16 SS G_CDS: -0.46 Total: 54.71 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.22 -11.18 -42.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451932016.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.399 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds