Wall clock time and date at job start Tue Mar 31 2020 16:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99984 * 2 1 4 4 C 1.53001 * 109.47192 * 127.91006 * 3 2 1 5 5 N 1.46506 * 109.47040 * 293.74728 * 4 3 2 6 6 S 1.65601 * 119.99681 * 55.92044 * 5 4 3 7 7 O 1.42093 * 106.40148 * 34.03761 * 6 5 4 8 8 O 1.42097 * 106.40447 * 261.11231 * 6 5 4 9 9 N 1.65608 * 107.21366 * 147.57344 * 6 5 4 10 10 C 1.46501 * 119.99506 * 81.71040 * 9 6 5 11 11 C 1.46494 * 119.99758 * 261.70666 * 9 6 5 12 12 H 1.09005 * 109.47365 * 65.10235 * 11 9 6 13 13 C 1.53008 * 109.46753 * 185.09647 * 11 9 6 14 14 C 1.50696 * 109.47386 * 305.09918 * 11 9 6 15 15 H 1.07998 * 120.00173 * 359.97438 * 14 11 9 16 16 C 1.37878 * 119.99904 * 180.02562 * 14 11 9 17 17 N 1.31517 * 120.00329 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00057 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.46970 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47176 * 119.99525 * 18 16 14 21 21 H 1.48500 * 109.47164 * 239.99909 * 18 16 14 22 22 C 1.52992 * 109.47431 * 53.74805 * 4 3 2 23 23 C 1.53001 * 109.47431 * 179.97438 * 22 4 3 24 24 C 1.52999 * 109.47043 * 300.00050 * 23 22 4 25 25 C 1.53005 * 109.46911 * 60.00155 * 24 23 22 26 26 C 1.52999 * 109.46893 * 299.99292 * 25 24 23 27 27 H 1.07995 * 120.00511 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99371 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00511 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47065 * 7.91163 * 3 2 1 31 31 H 1.08998 * 109.47658 * 247.90873 * 3 2 1 32 32 H 0.96997 * 119.99678 * 235.92502 * 5 4 3 33 33 H 1.09001 * 109.46911 * 269.99418 * 10 9 6 34 34 H 1.09001 * 109.46495 * 149.99882 * 10 9 6 35 35 H 1.08998 * 109.47532 * 30.00421 * 10 9 6 36 36 H 1.09000 * 109.47169 * 192.01526 * 13 11 9 37 37 H 1.08991 * 109.47268 * 312.01698 * 13 11 9 38 38 H 1.08999 * 109.46777 * 72.01793 * 13 11 9 39 39 H 0.97001 * 120.00431 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47199 * 300.00261 * 22 4 3 41 41 H 1.09000 * 109.47064 * 59.99976 * 22 4 3 42 42 H 1.09001 * 109.47064 * 179.97438 * 23 22 4 43 43 H 1.08997 * 109.46802 * 60.00440 * 23 22 4 44 44 H 1.09000 * 109.47131 * 299.99826 * 24 23 22 45 45 H 1.08998 * 109.46681 * 179.97438 * 24 23 22 46 46 H 1.09008 * 109.46547 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47492 * 59.99892 * 25 24 23 48 48 H 1.09000 * 109.47542 * 300.00570 * 26 25 24 49 49 H 1.09002 * 109.47146 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0860 1.3036 1.1381 5 7 2.3850 1.2908 2.4245 6 16 1.2903 0.0940 2.7589 7 8 1.7756 -1.0820 2.1259 8 8 0.0050 0.6420 2.5001 9 7 1.3579 -0.1905 4.3889 10 6 0.6272 0.6784 5.3149 11 6 2.1481 -1.3110 4.9048 12 1 3.2037 -1.1381 4.6951 13 6 1.9409 -1.4280 6.4162 14 6 1.7057 -2.5873 4.2368 15 1 0.9147 -2.5660 3.5018 16 6 2.3102 -3.7823 4.5647 17 7 3.2731 -3.8084 5.4601 18 14 1.7623 -5.3644 3.7361 19 1 0.6710 -5.0670 2.7740 20 1 2.9103 -5.9673 3.0123 21 1 1.2698 -6.3165 4.7638 22 6 3.9709 0.0605 1.0271 23 6 4.9939 0.0594 2.1649 24 6 5.8636 1.3146 2.0699 25 6 4.9786 2.5578 2.1810 26 6 3.9557 2.5589 1.0432 27 1 -0.5401 0.9352 0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3636 2.1287 0.1415 31 1 2.5799 1.4266 -0.9522 32 1 2.5620 1.9833 3.0802 33 1 1.2677 1.5069 5.6176 34 1 0.3334 0.1061 6.1948 35 1 -0.2629 1.0686 4.8215 36 1 2.6803 -2.1123 6.8324 37 1 2.0553 -0.4463 6.8757 38 1 0.9396 -1.8088 6.6172 39 1 3.6986 -4.6491 5.6905 40 1 3.3513 -0.8337 1.0943 41 1 4.4925 0.0701 0.0701 42 1 5.6240 -0.8266 2.0860 43 1 4.4726 0.0500 3.1221 44 1 6.3848 1.3239 1.1127 45 1 6.5920 1.3139 2.8807 46 1 5.5983 3.4520 2.1129 47 1 4.4574 2.5484 3.1383 48 1 4.4770 2.5682 0.0860 49 1 3.3250 3.4443 1.1226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451943821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:16 Heat of formation + Delta-G solvation = -49.461990 kcal Electronic energy + Delta-G solvation = -30257.481187 eV Core-core repulsion = 26540.208534 eV Total energy + Delta-G solvation = -3717.272653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.55011 -36.35861 -36.13662 -35.44778 -34.24064 -32.65918 -32.39783 -30.55884 -29.49213 -28.90385 -26.40532 -25.86403 -24.42473 -22.66376 -21.39744 -20.52762 -19.55322 -19.05949 -18.35088 -17.59531 -16.22585 -16.06421 -15.68362 -15.33119 -15.16854 -14.33046 -14.24989 -13.87917 -13.71903 -13.62467 -13.41862 -13.28090 -12.86883 -12.49528 -12.34591 -12.05710 -11.93631 -11.79109 -11.77011 -11.33894 -11.21423 -11.02614 -10.96657 -10.91906 -10.88525 -10.73417 -10.67552 -10.46789 -10.35483 -10.33048 -10.17036 -10.07802 -9.81577 -9.43869 -9.31838 -9.02353 -8.61221 -8.38244 -7.87328 -5.97740 -3.98538 1.49560 2.60333 3.36354 3.43698 3.52587 3.85847 4.23556 4.53525 4.73925 4.82982 4.94544 5.23945 5.28537 5.32653 5.37121 5.52341 5.55089 5.59859 5.67854 5.70383 5.74718 5.79727 5.84786 5.87777 5.93602 6.01427 6.09886 6.17556 6.23398 6.27644 6.37023 6.39670 6.49978 6.56476 6.61598 6.67489 6.76417 6.85434 7.01271 7.07570 7.10442 7.16784 7.38915 7.49292 7.70986 7.84771 8.10130 8.27974 9.00107 9.64716 11.09098 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.006041 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.246136 B = 4633.753512 C = 4867.518839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.214 4.214 3 C -0.109 4.109 4 C 0.202 3.798 5 N -1.129 6.129 6 S 2.788 3.212 7 O -0.941 6.941 8 O -1.007 7.007 9 N -1.001 6.001 10 C 0.082 3.918 11 C 0.279 3.721 12 H 0.031 0.969 13 C -0.137 4.137 14 C -0.504 4.504 15 H 0.066 0.934 16 C 0.065 3.935 17 N -0.898 5.898 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.287 1.287 22 C -0.157 4.157 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.113 4.113 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.141 0.859 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.400 0.600 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.017 0.983 38 H 0.038 0.962 39 H 0.259 0.741 40 H 0.122 0.878 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.355 13.246 -6.166 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.233 4.233 3 C -0.148 4.148 4 C 0.113 3.887 5 N -0.886 5.886 6 S 2.799 3.201 7 O -0.924 6.924 8 O -0.990 6.990 9 N -0.844 5.844 10 C -0.065 4.065 11 C 0.177 3.823 12 H 0.049 0.951 13 C -0.197 4.197 14 C -0.544 4.544 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.538 5.538 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.214 1.214 22 C -0.196 4.196 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.155 4.155 26 C -0.152 4.152 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.158 0.842 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.230 0.770 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.036 0.964 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.852 12.520 -6.822 14.378 hybrid contribution 0.109 -0.372 0.322 0.504 sum 1.961 12.148 -6.500 13.916 Atomic orbital electron populations 1.23965 0.95913 1.02080 0.97594 1.23611 0.96664 0.99700 1.03349 1.21325 0.98223 0.96285 0.98952 1.19912 0.90776 0.96216 0.81778 1.56168 1.62166 1.45789 1.24440 1.01913 0.73227 0.73122 0.71840 1.93576 1.79957 1.45468 1.73426 1.93525 1.40438 1.80704 1.84294 1.57826 1.62314 1.39874 1.24347 1.21470 0.95438 0.93516 0.96095 1.18618 0.89667 0.81955 0.92074 0.95112 1.22023 1.02023 0.98385 0.97222 1.21486 1.19920 0.91174 1.21793 0.91625 1.24762 0.94917 0.98892 0.95005 1.69900 1.24900 1.26387 1.32585 0.86477 0.78792 0.83079 0.79324 1.19612 1.21021 1.21373 1.22573 0.98553 1.00169 0.98281 1.21402 0.97132 0.96679 0.99766 1.21570 0.97768 0.95172 1.01163 1.21509 0.97318 0.97882 0.98793 1.21765 0.97231 0.96696 0.99531 0.88491 0.88424 0.84175 0.90932 0.89716 0.76957 0.94507 0.90161 0.91784 0.89522 0.96427 0.94247 0.93090 0.85974 0.92067 0.92019 0.91460 0.92476 0.92443 0.92349 0.91879 0.90887 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 11.28 29.02 0.33 -2.38 16 2 C -0.21 -3.56 5.44 -36.03 -0.20 -3.76 16 3 C -0.11 -1.51 4.87 -27.88 -0.14 -1.64 16 4 C 0.20 2.82 0.66 -131.82 -0.09 2.73 16 5 N -1.13 -17.53 4.56 0.54 0.00 -17.53 16 6 S 2.79 55.65 4.17 -107.50 -0.45 55.20 16 7 O -0.94 -21.24 8.53 -57.17 -0.49 -21.73 16 8 O -1.01 -21.42 14.27 -57.17 -0.82 -22.24 16 9 N -1.00 -20.68 3.41 -115.85 -0.40 -21.08 16 10 C 0.08 1.39 9.69 59.85 0.58 1.97 16 11 C 0.28 6.73 2.98 -69.08 -0.21 6.52 16 12 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 13 C -0.14 -3.09 7.56 37.16 0.28 -2.81 16 14 C -0.50 -13.80 7.01 -34.44 -0.24 -14.04 16 15 H 0.07 1.87 6.50 -52.49 -0.34 1.53 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.90 -25.05 11.48 55.43 0.64 -24.41 16 18 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.16 -2.42 4.13 -26.73 -0.11 -2.53 16 23 C -0.11 -1.74 5.77 -26.73 -0.15 -1.90 16 24 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 25 C -0.12 -1.28 5.75 -26.73 -0.15 -1.43 16 26 C -0.11 -1.23 4.80 -26.73 -0.13 -1.36 16 27 H 0.10 1.58 7.83 -52.49 -0.41 1.17 16 28 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.14 2.52 5.78 -52.49 -0.30 2.22 16 30 H 0.07 0.98 7.81 -51.93 -0.41 0.57 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 5.36 7.33 -34.48 -0.25 5.11 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.35 5.89 -51.93 -0.31 1.04 16 35 H 0.06 1.05 7.12 -51.93 -0.37 0.69 16 36 H 0.09 2.14 6.49 -51.93 -0.34 1.80 16 37 H 0.02 0.33 6.83 -51.93 -0.35 -0.03 16 38 H 0.04 0.89 7.72 -51.93 -0.40 0.48 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 40 H 0.12 2.29 3.88 -51.93 -0.20 2.08 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 1.19 7.39 -51.93 -0.38 0.81 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 47 H 0.06 0.71 6.78 -51.93 -0.35 0.36 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -30.77 363.37 -9.72 -40.50 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -8.19 Total: 9.18 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -0.48 Total: -20.53 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.24 Total: -63.02 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.30 Total: -43.96 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 55.65 SS G_CDS: -0.45 Total: 55.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.77 -9.72 -40.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451943821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.966 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds