Wall clock time and date at job start Tue Mar 31 2020 16:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99984 * 2 1 4 4 C 1.53001 * 109.47192 * 127.91006 * 3 2 1 5 5 N 1.46506 * 109.47040 * 293.74728 * 4 3 2 6 6 S 1.65601 * 119.99681 * 55.92044 * 5 4 3 7 7 O 1.42093 * 106.40148 * 34.03761 * 6 5 4 8 8 O 1.42097 * 106.40447 * 261.11231 * 6 5 4 9 9 N 1.65608 * 107.21366 * 147.57344 * 6 5 4 10 10 C 1.46501 * 119.99506 * 81.71040 * 9 6 5 11 11 C 1.46494 * 119.99758 * 261.70666 * 9 6 5 12 12 H 1.09005 * 109.47365 * 65.10235 * 11 9 6 13 13 C 1.53008 * 109.46753 * 185.09647 * 11 9 6 14 14 C 1.50696 * 109.47386 * 305.09918 * 11 9 6 15 15 H 1.07998 * 120.00173 * 359.97438 * 14 11 9 16 16 C 1.37878 * 119.99904 * 180.02562 * 14 11 9 17 17 N 1.31517 * 120.00329 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00057 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.46970 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47176 * 119.99525 * 18 16 14 21 21 H 1.48500 * 109.47164 * 239.99909 * 18 16 14 22 22 C 1.52992 * 109.47431 * 53.74805 * 4 3 2 23 23 C 1.53001 * 109.47431 * 179.97438 * 22 4 3 24 24 C 1.52999 * 109.47043 * 300.00050 * 23 22 4 25 25 C 1.53005 * 109.46911 * 60.00155 * 24 23 22 26 26 C 1.52999 * 109.46893 * 299.99292 * 25 24 23 27 27 H 1.07995 * 120.00511 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99371 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00511 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.47065 * 7.91163 * 3 2 1 31 31 H 1.08998 * 109.47658 * 247.90873 * 3 2 1 32 32 H 0.96997 * 119.99678 * 235.92502 * 5 4 3 33 33 H 1.09001 * 109.46911 * 269.99418 * 10 9 6 34 34 H 1.09001 * 109.46495 * 149.99882 * 10 9 6 35 35 H 1.08998 * 109.47532 * 30.00421 * 10 9 6 36 36 H 1.09000 * 109.47169 * 192.01526 * 13 11 9 37 37 H 1.08991 * 109.47268 * 312.01698 * 13 11 9 38 38 H 1.08999 * 109.46777 * 72.01793 * 13 11 9 39 39 H 0.97001 * 120.00431 * 180.02562 * 17 16 14 40 40 H 1.09000 * 109.47199 * 300.00261 * 22 4 3 41 41 H 1.09000 * 109.47064 * 59.99976 * 22 4 3 42 42 H 1.09001 * 109.47064 * 179.97438 * 23 22 4 43 43 H 1.08997 * 109.46802 * 60.00440 * 23 22 4 44 44 H 1.09000 * 109.47131 * 299.99826 * 24 23 22 45 45 H 1.08998 * 109.46681 * 179.97438 * 24 23 22 46 46 H 1.09008 * 109.46547 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47492 * 59.99892 * 25 24 23 48 48 H 1.09000 * 109.47542 * 300.00570 * 26 25 24 49 49 H 1.09002 * 109.47146 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0860 1.3036 1.1381 5 7 2.3850 1.2908 2.4245 6 16 1.2903 0.0940 2.7589 7 8 1.7756 -1.0820 2.1259 8 8 0.0050 0.6420 2.5001 9 7 1.3579 -0.1905 4.3889 10 6 0.6272 0.6784 5.3149 11 6 2.1481 -1.3110 4.9048 12 1 3.2037 -1.1381 4.6951 13 6 1.9409 -1.4280 6.4162 14 6 1.7057 -2.5873 4.2368 15 1 0.9147 -2.5660 3.5018 16 6 2.3102 -3.7823 4.5647 17 7 3.2731 -3.8084 5.4601 18 14 1.7623 -5.3644 3.7361 19 1 0.6710 -5.0670 2.7740 20 1 2.9103 -5.9673 3.0123 21 1 1.2698 -6.3165 4.7638 22 6 3.9709 0.0605 1.0271 23 6 4.9939 0.0594 2.1649 24 6 5.8636 1.3146 2.0699 25 6 4.9786 2.5578 2.1810 26 6 3.9557 2.5589 1.0432 27 1 -0.5401 0.9352 0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3636 2.1287 0.1415 31 1 2.5799 1.4266 -0.9522 32 1 2.5620 1.9833 3.0802 33 1 1.2677 1.5069 5.6176 34 1 0.3334 0.1061 6.1948 35 1 -0.2629 1.0686 4.8215 36 1 2.6803 -2.1123 6.8324 37 1 2.0553 -0.4463 6.8757 38 1 0.9396 -1.8088 6.6172 39 1 3.6986 -4.6491 5.6905 40 1 3.3513 -0.8337 1.0943 41 1 4.4925 0.0701 0.0701 42 1 5.6240 -0.8266 2.0860 43 1 4.4726 0.0500 3.1221 44 1 6.3848 1.3239 1.1127 45 1 6.5920 1.3139 2.8807 46 1 5.5983 3.4520 2.1129 47 1 4.4574 2.5484 3.1383 48 1 4.4770 2.5682 0.0860 49 1 3.3250 3.4443 1.1226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451943821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:14 Heat of formation + Delta-G solvation = -68.796368 kcal Electronic energy + Delta-G solvation = -30258.319589 eV Core-core repulsion = 26540.208534 eV Total energy + Delta-G solvation = -3718.111055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.66595 -38.09161 -37.75976 -36.89076 -35.59829 -34.51713 -33.81931 -31.59213 -30.82978 -30.60762 -28.11004 -26.96002 -26.31968 -23.72691 -22.60864 -22.19932 -20.69966 -20.41747 -19.74614 -19.31934 -17.98396 -17.67586 -17.17162 -16.75774 -16.50168 -16.14980 -15.46630 -15.29941 -15.24115 -14.95013 -14.74219 -14.40449 -14.21305 -13.99004 -13.70582 -13.55365 -13.41500 -13.10855 -12.98265 -12.94402 -12.80609 -12.68823 -12.61332 -12.49366 -12.31246 -12.20915 -12.17266 -12.07217 -11.96955 -11.85706 -11.60010 -11.35160 -11.23036 -11.12304 -10.61448 -10.49537 -10.33356 -9.90982 -9.61499 -8.09630 -6.14997 -0.04657 1.26831 1.35142 1.38298 1.50494 2.35818 2.47415 2.78682 3.20093 3.66081 3.77405 3.93747 4.02135 4.13157 4.18355 4.21796 4.30076 4.46663 4.48328 4.60675 4.63634 4.69458 4.73054 4.80409 4.82362 4.87703 4.93351 4.95285 4.96980 5.03434 5.05545 5.07950 5.20953 5.25472 5.30603 5.37974 5.39892 5.51472 5.60525 5.66007 5.69190 5.75603 5.82566 5.84713 5.86398 6.19536 6.27233 6.35253 6.85895 7.49525 8.95383 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.006041 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.246136 B = 4633.753512 C = 4867.518839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.212 4.212 3 C -0.109 4.109 4 C 0.199 3.801 5 N -1.116 6.116 6 S 2.794 3.206 7 O -0.973 6.973 8 O -1.023 7.023 9 N -1.011 6.011 10 C 0.070 3.930 11 C 0.287 3.713 12 H 0.009 0.991 13 C -0.126 4.126 14 C -0.515 4.515 15 H 0.045 0.955 16 C 0.024 3.976 17 N -0.914 5.914 18 Si 0.937 3.063 19 H -0.281 1.281 20 H -0.281 1.281 21 H -0.274 1.274 22 C -0.159 4.159 23 C -0.114 4.114 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.106 4.106 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.412 0.588 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.033 0.967 39 H 0.261 0.739 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.055 0.945 48 H 0.097 0.903 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 16.021 -6.710 17.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.231 4.231 3 C -0.147 4.147 4 C 0.110 3.890 5 N -0.877 5.877 6 S 2.806 3.194 7 O -0.957 6.957 8 O -1.006 7.006 9 N -0.852 5.852 10 C -0.075 4.075 11 C 0.184 3.816 12 H 0.026 0.974 13 C -0.186 4.186 14 C -0.554 4.554 15 H 0.063 0.937 16 C -0.174 4.174 17 N -0.554 5.554 18 Si 0.764 3.236 19 H -0.206 1.206 20 H -0.207 1.207 21 H -0.200 1.200 22 C -0.198 4.198 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.145 4.145 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.137 0.863 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.246 0.754 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.104 0.896 47 H 0.074 0.926 48 H 0.115 0.885 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.689 15.304 -7.341 17.185 hybrid contribution -0.136 -1.237 0.450 1.324 sum 2.553 14.067 -6.891 15.871 Atomic orbital electron populations 1.24002 0.96323 1.01987 0.98968 1.23719 0.96606 1.00670 1.02136 1.21430 0.98299 0.94504 1.00496 1.20144 0.90888 0.97278 0.80694 1.55788 1.61460 1.44840 1.25609 1.01498 0.73334 0.73176 0.71364 1.93562 1.80419 1.47662 1.74039 1.93505 1.41738 1.80906 1.84408 1.57721 1.62462 1.39855 1.25190 1.21754 0.96182 0.94021 0.95543 1.18251 0.88759 0.81831 0.92802 0.97367 1.21849 1.00815 0.99786 0.96119 1.21676 1.19317 0.92992 1.21441 0.93664 1.25328 0.95298 1.01101 0.95719 1.69973 1.25386 1.26901 1.33179 0.85825 0.78181 0.80873 0.78692 1.20635 1.20674 1.19959 1.22515 0.98440 0.99557 0.99274 1.21379 0.97317 0.98112 0.98338 1.21534 0.97442 0.93891 1.02233 1.21535 0.97381 0.98031 0.98497 1.21786 0.96900 0.95115 1.00723 0.87505 0.89732 0.86257 0.89985 0.86457 0.75448 0.90879 0.90029 0.91271 0.91828 0.92850 0.94779 0.92937 0.89820 0.89819 0.93945 0.94455 0.90691 0.92308 0.89568 0.92645 0.88486 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.11 11.28 67.78 0.76 -5.34 16 2 C -0.21 -7.08 5.44 25.65 0.14 -6.94 16 3 C -0.11 -2.75 4.87 29.85 0.15 -2.61 16 4 C 0.20 5.09 0.66 3.60 0.00 5.09 16 5 N -1.12 -33.20 4.56 -152.20 -0.69 -33.89 16 6 S 2.79 112.47 4.17 -56.49 -0.24 112.24 16 7 O -0.97 -45.87 8.53 -128.00 -1.09 -46.96 16 8 O -1.02 -43.39 14.27 -128.00 -1.83 -45.22 16 9 N -1.01 -41.77 3.41 -520.44 -1.78 -43.55 16 10 C 0.07 2.29 9.69 127.77 1.24 3.53 16 11 C 0.29 14.12 2.98 44.25 0.13 14.25 16 12 H 0.01 0.46 7.93 -2.38 -0.02 0.44 16 13 C -0.13 -5.69 7.56 71.98 0.54 -5.15 16 14 C -0.51 -29.08 7.01 25.60 0.18 -28.90 16 15 H 0.05 2.70 6.50 -2.91 -0.02 2.68 16 16 C 0.02 1.39 5.30 84.65 0.45 1.84 16 17 N -0.91 -52.05 11.48 21.45 0.25 -51.80 16 18 Si 0.94 46.44 29.54 68.60 2.03 48.47 16 19 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 22 C -0.16 -4.82 4.13 30.59 0.13 -4.69 16 23 C -0.11 -3.54 5.77 30.59 0.18 -3.36 16 24 C -0.11 -2.49 5.92 30.60 0.18 -2.31 16 25 C -0.12 -2.09 5.75 30.60 0.18 -1.91 16 26 C -0.11 -1.84 4.80 30.60 0.15 -1.69 16 27 H 0.11 3.45 7.83 -2.91 -0.02 3.43 16 28 H 0.08 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.12 4.51 5.78 -2.91 -0.02 4.49 16 30 H 0.08 1.96 7.81 -2.39 -0.02 1.94 16 31 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.41 10.15 7.33 -96.74 -0.71 9.44 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 2.62 5.89 -2.39 -0.01 2.60 16 35 H 0.07 2.18 7.12 -2.39 -0.02 2.16 16 36 H 0.06 3.16 6.49 -2.39 -0.02 3.15 16 37 H 0.05 1.97 6.83 -2.39 -0.02 1.95 16 38 H 0.03 1.53 7.72 -2.39 -0.02 1.51 16 39 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.08 3.27 3.88 -2.39 -0.01 3.26 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.04 1.36 7.39 -2.39 -0.02 1.34 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.05 1.08 6.78 -2.39 -0.02 1.06 16 48 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -69.24 363.37 1.27 -67.97 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.22 Total: 30.94 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 4.40 Total: -38.20 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -2.22 Total: -129.24 kcal Atomic # 8 Polarization: -89.26 SS G_CDS: -2.92 Total: -92.18 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 112.47 SS G_CDS: -0.24 Total: 112.24 kcal Total: -69.24 1.27 -67.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451943821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.828 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds