Wall clock time and date at job start Tue Mar 31 2020 15:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46789 * 2 1 4 4 N 1.46899 * 109.47185 * 119.99749 * 2 1 3 5 5 C 1.48556 * 110.99789 * 172.72215 * 4 2 1 6 6 C 1.54381 * 104.59528 * 200.96275 * 5 4 2 7 7 C 1.54261 * 105.05894 * 23.85423 * 6 5 4 8 8 H 1.08997 * 110.32552 * 119.00352 * 7 6 5 9 9 N 1.46503 * 110.32112 * 241.10383 * 7 6 5 10 10 C 1.46500 * 120.00036 * 58.55163 * 9 7 6 11 11 S 1.65603 * 120.00038 * 238.54247 * 9 7 6 12 12 O 1.42101 * 104.27721 * 206.07120 * 11 9 7 13 13 O 1.42099 * 104.27506 * 333.93501 * 11 9 7 14 14 C 1.81408 * 104.44592 * 90.00486 * 11 9 7 15 15 C 1.53002 * 109.47038 * 172.58344 * 14 11 9 16 16 C 1.50707 * 115.54800 * 39.93448 * 15 14 11 17 17 H 1.08001 * 119.99590 * 264.77127 * 16 15 14 18 18 C 1.37876 * 119.99816 * 84.77358 * 16 15 14 19 19 N 1.31512 * 120.00514 * 1.62778 * 18 16 15 20 20 Si 1.86808 * 119.99537 * 181.63210 * 18 16 15 21 21 H 1.48498 * 109.47178 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46683 * 120.00066 * 20 18 16 23 23 H 1.48494 * 109.46906 * 239.99723 * 20 18 16 24 24 C 1.52996 * 117.49718 * 254.22535 * 15 14 11 25 25 C 1.52997 * 117.49879 * 185.60156 * 15 14 11 26 26 C 1.48563 * 110.99755 * 57.30695 * 4 2 1 27 27 H 1.09002 * 109.47438 * 301.45362 * 1 2 3 28 28 H 1.08993 * 109.47461 * 61.45367 * 1 2 3 29 29 H 1.09008 * 109.46941 * 181.45647 * 1 2 3 30 30 H 1.08997 * 109.47025 * 240.00116 * 2 1 3 31 31 H 1.09002 * 109.47076 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47121 * 299.99978 * 3 2 1 33 33 H 1.09005 * 109.46960 * 60.00161 * 3 2 1 34 34 H 1.09002 * 110.41497 * 82.18739 * 5 4 2 35 35 H 1.09004 * 110.51502 * 319.78783 * 5 4 2 36 36 H 1.09003 * 110.32377 * 264.95739 * 6 5 4 37 37 H 1.09002 * 110.41068 * 142.79420 * 6 5 4 38 38 H 1.09009 * 109.46539 * 269.99553 * 10 9 7 39 39 H 1.08996 * 109.47212 * 29.99237 * 10 9 7 40 40 H 1.08999 * 109.47215 * 150.00232 * 10 9 7 41 41 H 1.09001 * 109.46949 * 292.57837 * 14 11 9 42 42 H 1.08995 * 109.47312 * 52.58054 * 14 11 9 43 43 H 0.97002 * 120.00337 * 185.01576 * 19 18 16 44 44 H 1.08997 * 117.49953 * 359.97438 * 24 15 14 45 45 H 1.08997 * 117.49644 * 145.02412 * 24 15 14 46 46 H 1.09004 * 117.49948 * 214.97997 * 25 15 14 47 47 H 1.08996 * 117.49951 * 0.02562 * 25 15 14 48 48 H 1.08996 * 110.41287 * 40.25882 * 26 4 2 49 49 H 1.08999 * 110.41286 * 277.81517 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4942 -0.8662 1.1491 6 6 3.7831 -2.0239 2.1287 7 6 2.4651 -2.8218 2.2061 8 1 2.6206 -3.8441 1.8613 9 7 1.9498 -2.8212 3.5775 10 6 1.6501 -1.5529 4.2468 11 16 1.7058 -4.2541 4.3710 12 8 0.6908 -3.9601 5.3211 13 8 1.4854 -5.1973 3.3313 14 6 3.2825 -4.5834 5.2055 15 6 3.1281 -5.7941 6.1282 16 6 2.2997 -6.9275 5.5801 17 1 1.2505 -6.9976 5.8261 18 6 2.8815 -7.8749 4.7646 19 7 4.1661 -7.8077 4.4910 20 14 1.8448 -9.2540 4.0483 21 1 0.4397 -9.1057 4.5052 22 1 1.8931 -9.1905 2.5654 23 1 2.3779 -10.5625 4.5052 24 6 3.0575 -5.5305 7.6336 25 6 4.3143 -6.1552 7.0245 26 6 1.4908 -2.0791 1.2668 27 1 -0.3634 0.5362 0.8767 28 1 -0.3634 0.4910 -0.9027 29 1 -0.3633 -1.0274 0.0261 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 3.9957 0.0440 1.4779 35 1 3.8132 -1.1325 0.1414 36 1 4.0466 -1.6318 3.1110 37 1 4.5855 -2.6546 1.7458 38 1 2.5373 -1.2020 4.7741 39 1 1.3516 -0.8123 3.5050 40 1 0.8388 -1.7010 4.9595 41 1 4.0515 -4.7898 4.4611 42 1 3.5710 -3.7125 5.7941 43 1 4.5609 -8.4300 3.8603 44 1 3.1215 -4.4947 7.9668 45 1 2.4117 -6.1769 8.2280 46 1 4.4954 -7.2125 7.2181 47 1 5.2046 -5.5300 6.9571 48 1 1.4944 -2.5358 0.2772 49 1 0.4839 -2.0821 1.6842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574879261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:22 Heat of formation + Delta-G solvation = -38.148990 kcal Electronic energy + Delta-G solvation = -28503.451120 eV Core-core repulsion = 24786.669036 eV Total energy + Delta-G solvation = -3716.782085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.62704 -36.69508 -36.14834 -36.01771 -34.87400 -33.07448 -32.02729 -29.37352 -28.77907 -28.14498 -27.02313 -25.63445 -25.20175 -22.35139 -21.14914 -20.45690 -20.24122 -19.40242 -18.15963 -17.12530 -16.62217 -16.40997 -15.53155 -15.33283 -14.98306 -14.67901 -14.54361 -14.19584 -13.82063 -13.65590 -13.28185 -13.13908 -12.92656 -12.75752 -12.31842 -12.22485 -12.20948 -12.00136 -11.98465 -11.74995 -11.68106 -11.40662 -11.13798 -11.07094 -10.99101 -10.96930 -10.91275 -10.88054 -10.64586 -10.55837 -10.47675 -10.31430 -10.06903 -9.61098 -9.03091 -8.74002 -8.51673 -8.47023 -8.03951 -6.14493 -4.30039 1.19200 3.33027 3.41684 3.47882 3.51666 3.81795 4.42010 4.54107 4.57850 4.77062 4.78796 4.94084 4.99943 5.10136 5.14948 5.16575 5.20980 5.30083 5.33919 5.43016 5.47719 5.52746 5.62433 5.65882 5.72349 5.75482 5.80855 5.82185 5.85786 5.98961 5.99402 6.01990 6.05068 6.18820 6.24029 6.32704 6.37537 6.45609 6.65804 6.73657 6.79922 6.95100 6.97825 7.05544 7.21948 7.46566 7.79414 8.20954 8.80003 9.47626 10.92896 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.003887 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.520143 B = 7201.876059 C = 7656.243991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 C -0.141 4.141 4 N -0.504 5.504 5 C 0.035 3.965 6 C -0.140 4.140 7 C 0.146 3.854 8 H 0.110 0.890 9 N -1.006 6.006 10 C 0.082 3.918 11 S 2.622 3.378 12 O -0.971 6.971 13 O -0.946 6.946 14 C -0.560 4.560 15 C 0.047 3.953 16 C -0.539 4.539 17 H 0.069 0.931 18 C 0.096 3.904 19 N -0.868 5.868 20 Si 0.892 3.108 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.284 1.284 24 C -0.205 4.205 25 C -0.140 4.140 26 C 0.026 3.974 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.096 0.904 43 H 0.263 0.737 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 16.595 -8.095 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.044 4.044 3 C -0.199 4.199 4 N -0.229 5.229 5 C -0.093 4.093 6 C -0.180 4.180 7 C 0.038 3.962 8 H 0.128 0.872 9 N -0.841 5.841 10 C -0.063 4.063 11 S 2.720 3.280 12 O -0.961 6.961 13 O -0.936 6.936 14 C -0.692 4.692 15 C 0.045 3.955 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.111 4.111 19 N -0.503 5.503 20 Si 0.719 3.281 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.210 1.210 24 C -0.242 4.242 25 C -0.179 4.179 26 C -0.103 4.103 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.141 0.859 42 H 0.114 0.886 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.102 0.898 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.051 16.352 -7.730 18.117 hybrid contribution 0.698 -0.945 -1.059 1.582 sum -0.353 15.407 -8.789 17.741 Atomic orbital electron populations 1.21885 0.94252 1.02338 1.02060 1.21813 0.95894 0.95434 0.91297 1.21796 1.00886 0.95200 1.01976 1.65478 1.05481 1.15276 1.36686 1.23076 0.89170 0.98833 0.98195 1.22807 0.97617 0.96802 1.00795 1.21536 0.92161 1.00671 0.81813 0.87191 1.57957 1.80998 1.22778 1.22327 1.21521 1.00305 0.86364 0.98143 1.04731 0.77414 0.71495 0.74342 1.93457 1.54771 1.83680 1.64211 1.93504 1.84735 1.59865 1.55476 1.30018 1.21361 1.05785 1.12026 1.18196 0.99768 0.91806 0.85702 1.20673 0.95716 1.08904 1.32380 0.91277 1.24903 0.94518 0.96932 0.94754 1.69995 1.10476 1.37374 1.32421 0.86517 0.81100 0.81003 0.79518 1.19162 1.20205 1.20984 1.23121 1.03074 0.99343 0.98707 1.22502 0.90543 0.99938 1.04871 1.23471 1.00102 0.88225 0.98530 0.91717 0.92431 0.92398 0.94121 0.92805 0.92536 0.91786 0.90155 0.93854 0.89875 0.90506 0.93943 0.89335 0.90582 0.85865 0.88589 0.92693 0.91338 0.89754 0.89438 0.91785 0.92949 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.02 37.16 0.34 -0.96 16 2 C 0.06 0.59 2.46 -67.71 -0.17 0.42 16 3 C -0.14 -1.09 9.20 37.16 0.34 -0.75 16 4 N -0.50 -5.39 4.07 -222.03 -0.90 -6.30 16 5 C 0.04 0.35 5.63 -2.18 -0.01 0.34 16 6 C -0.14 -1.62 6.48 -25.35 -0.16 -1.79 16 7 C 0.15 2.08 3.40 -66.55 -0.23 1.86 16 8 H 0.11 1.73 6.93 -51.93 -0.36 1.38 16 9 N -1.01 -16.18 2.98 -113.13 -0.34 -16.52 16 10 C 0.08 1.13 9.70 59.85 0.58 1.71 16 11 S 2.62 55.88 4.56 -107.50 -0.49 55.39 16 12 O -0.97 -22.76 16.57 -57.54 -0.95 -23.71 16 13 O -0.95 -23.16 15.81 -57.54 -0.91 -24.07 16 14 C -0.56 -11.89 6.29 37.16 0.23 -11.66 16 15 C 0.05 1.17 1.70 -155.66 -0.26 0.90 16 16 C -0.54 -14.97 6.96 -34.44 -0.24 -15.21 16 17 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 18 C 0.10 2.66 5.42 -17.82 -0.10 2.56 16 19 N -0.87 -24.10 12.73 55.43 0.71 -23.40 16 20 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 C -0.21 -4.55 9.88 -26.73 -0.26 -4.81 16 25 C -0.14 -3.24 9.26 -26.73 -0.25 -3.49 16 26 C 0.03 0.33 4.15 -2.18 -0.01 0.32 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.55 6.81 -51.92 -0.35 0.19 16 30 H 0.04 0.38 7.95 -51.93 -0.41 -0.03 16 31 H 0.05 0.41 7.15 -51.93 -0.37 0.03 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.72 7.73 -51.93 -0.40 0.32 16 35 H 0.04 0.41 7.87 -51.93 -0.41 0.00 16 36 H 0.08 0.96 7.24 -51.93 -0.38 0.58 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.51 7.91 -51.92 -0.41 0.10 16 39 H 0.09 1.10 6.26 -51.93 -0.33 0.78 16 40 H 0.08 1.12 6.91 -51.93 -0.36 0.76 16 41 H 0.12 2.63 8.14 -51.92 -0.42 2.21 16 42 H 0.10 1.72 7.95 -51.93 -0.41 1.31 16 43 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 44 H 0.07 1.34 8.08 -51.93 -0.42 0.92 16 45 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 46 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 47 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.05 0.62 8.00 -51.93 -0.42 0.20 16 49 H 0.09 1.21 7.53 -51.93 -0.39 0.81 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -31.76 390.87 -10.99 -42.75 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.77 Total: 3.41 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: -0.20 Total: -30.57 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.54 Total: -46.22 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -1.86 Total: -47.78 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 55.88 SS G_CDS: -0.49 Total: 55.39 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.76 -10.99 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574879261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.604 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds