Wall clock time and date at job start Tue Mar 31 2020 15:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 N 1.46900 * 109.47272 * 119.99394 * 2 1 3 5 5 C 1.48533 * 111.00459 * 180.02562 * 4 2 1 6 6 C 1.54929 * 103.23004 * 200.28452 * 5 4 2 7 7 C 1.54599 * 102.92378 * 37.41380 * 6 5 4 8 8 H 1.08997 * 110.39081 * 219.08209 * 7 6 5 9 9 N 1.46498 * 110.30698 * 96.95902 * 7 6 5 10 10 C 1.46496 * 120.00083 * 304.28499 * 9 7 6 11 11 S 1.65605 * 120.00013 * 124.55976 * 9 7 6 12 12 O 1.42099 * 104.27326 * 25.79724 * 11 9 7 13 13 O 1.42096 * 104.27386 * 153.65328 * 11 9 7 14 14 C 1.81399 * 104.44953 * 269.72283 * 11 9 7 15 15 C 1.52997 * 109.47151 * 172.40400 * 14 11 9 16 16 C 1.50707 * 115.54830 * 40.23987 * 15 14 11 17 17 H 1.07996 * 120.00245 * 266.40209 * 16 15 14 18 18 C 1.37877 * 119.99621 * 86.39737 * 16 15 14 19 19 N 1.31515 * 120.00305 * 1.95326 * 18 16 15 20 20 Si 1.86799 * 120.00005 * 181.95100 * 18 16 15 21 21 H 1.48504 * 109.47124 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47250 * 119.99854 * 20 18 16 23 23 H 1.48499 * 109.47413 * 240.00204 * 20 18 16 24 24 C 1.52997 * 117.50223 * 254.53685 * 15 14 11 25 25 C 1.52995 * 117.50283 * 185.90940 * 15 14 11 26 26 C 1.47907 * 110.99539 * 62.61820 * 4 2 1 27 27 H 1.08996 * 109.47081 * 60.00208 * 1 2 3 28 28 H 1.08997 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46853 * 300.00203 * 1 2 3 30 30 H 1.08994 * 109.47247 * 239.99771 * 2 1 3 31 31 H 1.08999 * 109.46704 * 186.40138 * 3 2 1 32 32 H 1.09004 * 109.46551 * 306.39174 * 3 2 1 33 33 H 1.08994 * 109.47549 * 66.39305 * 3 2 1 34 34 H 1.09004 * 110.66292 * 318.72120 * 5 4 2 35 35 H 1.09000 * 110.66412 * 81.67816 * 5 4 2 36 36 H 1.09003 * 110.72659 * 279.05737 * 6 5 4 37 37 H 1.09005 * 110.72423 * 155.77380 * 6 5 4 38 38 H 1.08999 * 109.47357 * 90.00111 * 10 9 7 39 39 H 1.09003 * 109.47381 * 210.00316 * 10 9 7 40 40 H 1.09004 * 109.47048 * 329.99883 * 10 9 7 41 41 H 1.08997 * 109.47191 * 292.40769 * 14 11 9 42 42 H 1.09010 * 109.46908 * 52.40641 * 14 11 9 43 43 H 0.96998 * 120.00274 * 185.00691 * 19 18 16 44 44 H 1.09003 * 117.49860 * 359.97438 * 24 15 14 45 45 H 1.09000 * 117.49944 * 145.02428 * 24 15 14 46 46 H 1.08998 * 117.50021 * 214.98446 * 25 15 14 47 47 H 1.09004 * 117.49840 * 0.02562 * 25 15 14 48 48 H 1.09001 * 109.91664 * 26.49151 * 26 4 2 49 49 H 1.09007 * 109.91617 * 265.19518 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.5045 -0.7117 1.2342 6 6 3.8214 -1.8762 2.2057 7 6 2.7295 -2.9166 1.8660 8 1 2.3682 -3.3984 2.7746 9 7 3.2538 -3.9183 0.9344 10 6 3.8384 -3.4972 -0.3412 11 16 3.1795 -5.5270 1.3202 12 8 2.0815 -5.6219 2.2172 13 8 3.1574 -6.1882 0.0627 14 6 4.7391 -5.8574 2.1857 15 6 4.7117 -7.2739 2.7633 16 6 4.0945 -8.3252 1.8773 17 1 3.0481 -8.5718 1.9803 18 6 4.8657 -8.9723 0.9353 19 7 6.1485 -8.6997 0.8358 20 14 4.0888 -10.2362 -0.1997 21 1 2.6422 -10.3590 0.1126 22 1 4.2551 -9.8033 -1.6104 23 1 4.7512 -11.5508 -0.0040 24 6 4.5138 -7.4173 4.2736 25 6 5.8833 -7.6976 3.6514 26 6 1.5976 -2.1099 1.2026 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 3.1240 1.4446 -0.1146 32 1 1.5862 1.9883 -0.8273 33 1 1.7732 1.9223 0.9416 34 1 3.9098 -0.9162 0.2432 35 1 3.8925 0.2310 1.6200 36 1 3.7334 -1.5491 3.2417 37 1 4.8143 -2.2816 2.0110 38 1 4.9067 -3.3241 -0.2117 39 1 3.6844 -4.2774 -1.0866 40 1 3.3588 -2.5767 -0.6743 41 1 5.5695 -5.7665 1.4856 42 1 4.8653 -5.1376 2.9946 43 1 6.6758 -9.0999 0.1268 44 1 4.4036 -6.5025 4.8559 45 1 3.9371 -8.2722 4.6268 46 1 6.2074 -8.7367 3.5952 47 1 6.6734 -6.9669 3.8246 48 1 1.4464 -2.4546 0.1796 49 1 0.6767 -2.2219 1.7750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574879263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:29 Heat of formation + Delta-G solvation = -39.040527 kcal Electronic energy + Delta-G solvation = -28456.817660 eV Core-core repulsion = 24739.996916 eV Total energy + Delta-G solvation = -3716.820744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.76654 -36.72667 -36.22933 -36.06697 -34.95368 -33.05360 -32.04381 -29.45334 -28.90403 -28.20314 -27.10031 -25.70436 -25.25461 -22.31379 -21.16719 -20.80726 -20.07247 -19.44781 -18.28168 -17.27166 -16.58836 -16.43614 -15.85398 -15.16197 -14.97259 -14.68888 -14.58580 -14.18726 -13.92241 -13.65778 -13.61198 -13.12030 -12.99598 -12.73961 -12.40275 -12.31147 -12.24101 -12.20758 -11.97951 -11.82213 -11.75169 -11.33599 -11.17361 -11.13839 -11.13084 -11.00904 -10.98323 -10.90327 -10.68998 -10.64245 -10.49398 -10.34843 -10.09829 -9.64207 -9.06777 -8.81714 -8.52211 -8.49356 -8.07588 -6.16500 -4.32334 1.10222 3.31178 3.37761 3.40241 3.46574 3.83851 4.40105 4.48850 4.52844 4.72760 4.75781 4.86894 4.93218 5.06055 5.10326 5.14243 5.15382 5.20775 5.24270 5.39928 5.46530 5.47611 5.58124 5.60858 5.64418 5.67092 5.72538 5.79646 5.83954 5.88672 5.95187 5.96875 5.99244 6.03095 6.09630 6.28340 6.35302 6.39475 6.62185 6.65096 6.71947 6.92579 6.95793 7.00202 7.19785 7.46114 7.77137 8.18109 8.77657 9.45334 10.90713 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.003681 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.839191 B = 7603.853701 C = 8107.417601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 C -0.143 4.143 4 N -0.511 5.511 5 C 0.034 3.966 6 C -0.137 4.137 7 C 0.138 3.862 8 H 0.111 0.889 9 N -1.011 6.011 10 C 0.084 3.916 11 S 2.622 3.378 12 O -0.969 6.969 13 O -0.943 6.943 14 C -0.558 4.558 15 C 0.045 3.955 16 C -0.539 4.539 17 H 0.069 0.931 18 C 0.094 3.906 19 N -0.868 5.868 20 Si 0.892 3.108 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.283 1.283 24 C -0.205 4.205 25 C -0.137 4.137 26 C 0.027 3.973 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.264 0.736 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 18.435 -0.698 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.043 4.043 3 C -0.201 4.201 4 N -0.236 5.236 5 C -0.093 4.093 6 C -0.177 4.177 7 C 0.031 3.969 8 H 0.129 0.871 9 N -0.846 5.846 10 C -0.061 4.061 11 S 2.720 3.280 12 O -0.959 6.959 13 O -0.934 6.934 14 C -0.691 4.691 15 C 0.043 3.957 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.112 4.112 19 N -0.502 5.502 20 Si 0.719 3.281 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.209 1.209 24 C -0.242 4.242 25 C -0.176 4.176 26 C -0.102 4.102 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.142 0.858 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.441 18.091 -0.585 18.637 hybrid contribution 0.816 -0.742 -1.208 1.636 sum -3.625 17.349 -1.793 17.814 Atomic orbital electron populations 1.21848 0.94209 1.02232 1.02009 1.21816 0.96019 0.95260 0.91185 1.21836 1.00752 0.95229 1.02276 1.64906 1.08510 1.12836 1.37387 1.23265 0.88371 0.99068 0.98618 1.22926 0.99296 0.95198 1.00230 1.21645 0.92941 0.89625 0.92731 0.87122 1.58123 1.75037 1.25396 1.26064 1.21490 0.97495 1.01662 0.85464 1.04795 0.77301 0.70769 0.75176 1.93469 1.49961 1.84836 1.67684 1.93505 1.87164 1.71450 1.41232 1.30015 1.21038 1.06148 1.11894 1.18198 1.00776 0.88788 0.87910 1.20666 0.96473 1.21463 1.19064 0.91277 1.24916 0.94271 0.95706 0.96340 1.69998 1.05702 1.43388 1.31159 0.86511 0.80129 0.80419 0.81055 1.19142 1.20220 1.20928 1.23133 1.01954 1.01372 0.97765 1.22492 0.89786 1.01174 1.04153 1.23266 0.98853 0.87265 1.00833 0.92419 0.92504 0.91745 0.94155 0.92836 0.92362 0.91690 0.93480 0.90104 0.89794 0.90041 0.93080 0.89626 0.91969 0.85840 0.88490 0.92661 0.91340 0.89724 0.89323 0.91784 0.92549 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.14 37.16 0.34 -0.94 16 2 C 0.07 0.62 2.36 -67.71 -0.16 0.46 16 3 C -0.14 -1.11 8.89 37.16 0.33 -0.78 16 4 N -0.51 -5.45 5.11 -222.48 -1.14 -6.59 16 5 C 0.03 0.34 4.97 -1.90 -0.01 0.33 16 6 C -0.14 -1.48 6.33 -24.87 -0.16 -1.63 16 7 C 0.14 1.86 3.35 -66.56 -0.22 1.64 16 8 H 0.11 1.58 6.97 -51.93 -0.36 1.22 16 9 N -1.01 -15.78 2.97 -113.15 -0.34 -16.11 16 10 C 0.08 1.14 9.17 59.84 0.55 1.69 16 11 S 2.62 54.89 4.56 -107.50 -0.49 54.40 16 12 O -0.97 -22.11 16.61 -57.54 -0.96 -23.07 16 13 O -0.94 -23.04 15.81 -57.54 -0.91 -23.95 16 14 C -0.56 -11.66 6.28 37.16 0.23 -11.43 16 15 C 0.05 1.11 1.73 -155.66 -0.27 0.84 16 16 C -0.54 -14.90 6.99 -34.44 -0.24 -15.14 16 17 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 18 C 0.09 2.62 5.42 -17.82 -0.10 2.52 16 19 N -0.87 -24.09 12.64 55.43 0.70 -23.39 16 20 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.21 -4.48 9.88 -26.73 -0.26 -4.75 16 25 C -0.14 -3.16 9.15 -26.73 -0.24 -3.40 16 26 C 0.03 0.34 4.71 -2.74 -0.01 0.32 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.54 7.21 -51.93 -0.37 0.17 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.04 0.40 7.99 -51.93 -0.42 -0.01 16 31 H 0.05 0.40 7.28 -51.93 -0.38 0.02 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.46 6.36 -51.93 -0.33 0.13 16 35 H 0.08 0.71 7.79 -51.93 -0.40 0.30 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.86 7.97 -51.93 -0.41 0.45 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.28 6.91 -51.93 -0.36 0.93 16 40 H 0.06 0.71 5.42 -51.93 -0.28 0.43 16 41 H 0.12 2.60 8.14 -51.93 -0.42 2.18 16 42 H 0.10 1.68 7.95 -51.92 -0.41 1.27 16 43 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 44 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 45 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 46 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 47 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.06 0.73 6.47 -51.93 -0.34 0.39 16 49 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -31.77 389.03 -11.19 -42.97 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.68 Total: 3.09 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: -0.23 Total: -30.28 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.77 Total: -46.09 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -1.87 Total: -47.02 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 54.89 SS G_CDS: -0.49 Total: 54.40 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.77 -11.19 -42.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574879263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.928 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds