Wall clock time and date at job start Tue Mar 31 2020 18:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46850 * 110.99608 * 2 1 4 4 C 1.53038 * 109.51938 * 174.16448 * 3 2 1 5 5 C 1.53114 * 109.28211 * 59.18213 * 4 3 2 6 6 C 1.53123 * 109.15152 * 302.33751 * 5 4 3 7 7 H 1.09007 * 109.51098 * 297.73002 * 6 5 4 8 8 C 1.52993 * 109.49959 * 177.60778 * 6 5 4 9 9 C 1.53000 * 109.47527 * 175.20481 * 8 6 5 10 10 N 1.46499 * 109.46953 * 179.97438 * 9 8 6 11 11 S 1.65603 * 119.99641 * 164.99900 * 10 9 8 12 12 O 1.42102 * 104.27790 * 181.07177 * 11 10 9 13 13 O 1.42105 * 104.27887 * 308.92450 * 11 10 9 14 14 C 1.81398 * 104.44952 * 65.00034 * 11 10 9 15 15 C 1.53003 * 109.47112 * 172.65375 * 14 11 10 16 16 C 1.50703 * 115.54985 * 39.94297 * 15 14 11 17 17 H 1.08004 * 120.00074 * 272.13003 * 16 15 14 18 18 C 1.37879 * 119.99982 * 92.13221 * 16 15 14 19 19 N 1.31516 * 120.00101 * 173.99250 * 18 16 15 20 20 Si 1.86798 * 119.99757 * 353.98991 * 18 16 15 21 21 H 1.48501 * 109.46989 * 93.60258 * 20 18 16 22 22 H 1.48504 * 109.47167 * 213.59829 * 20 18 16 23 23 H 1.48501 * 109.47477 * 333.59981 * 20 18 16 24 24 C 1.53004 * 117.49681 * 254.24079 * 15 14 11 25 25 C 1.52994 * 117.49720 * 185.61615 * 15 14 11 26 26 C 1.46844 * 111.00136 * 235.79466 * 2 1 3 27 27 H 1.08999 * 109.47159 * 184.20956 * 1 2 3 28 28 H 1.09001 * 109.47404 * 304.20845 * 1 2 3 29 29 H 1.09006 * 109.47737 * 64.21007 * 1 2 3 30 30 H 1.09001 * 109.46222 * 294.17508 * 3 2 1 31 31 H 1.08992 * 109.46616 * 54.14939 * 3 2 1 32 32 H 1.09001 * 109.50259 * 179.12229 * 4 3 2 33 33 H 1.09006 * 109.50202 * 299.23484 * 4 3 2 34 34 H 1.08999 * 109.52861 * 62.24808 * 5 4 3 35 35 H 1.08999 * 109.52673 * 182.37985 * 5 4 3 36 36 H 1.09001 * 109.46944 * 295.20339 * 8 6 5 37 37 H 1.09000 * 109.47025 * 55.20119 * 8 6 5 38 38 H 1.09001 * 109.46893 * 299.99889 * 9 8 6 39 39 H 1.08996 * 109.46792 * 59.99765 * 9 8 6 40 40 H 0.96996 * 120.00453 * 345.00279 * 10 9 8 41 41 H 1.08998 * 109.46919 * 292.64774 * 14 11 10 42 42 H 1.08992 * 109.47290 * 52.65405 * 14 11 10 43 43 H 0.96994 * 119.99912 * 179.97438 * 19 18 16 44 44 H 1.08999 * 117.49758 * 359.97438 * 24 15 14 45 45 H 1.08995 * 117.50012 * 145.02108 * 24 15 14 46 46 H 1.09004 * 117.49603 * 214.97725 * 25 15 14 47 47 H 1.08998 * 117.50260 * 359.97438 * 25 15 14 48 48 H 1.09009 * 109.46087 * 305.85177 * 26 2 1 49 49 H 1.09003 * 109.46704 * 65.82922 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3342 0.1467 5 6 4.1187 0.5372 -1.0145 6 6 3.5181 -0.8713 -1.0207 7 1 3.7811 -1.3834 -0.0951 8 6 4.0681 -1.6558 -2.2135 9 6 3.5619 -3.0983 -2.1526 10 7 4.0882 -3.8492 -3.2951 11 16 4.0210 -5.5039 -3.3002 12 8 4.6333 -5.8757 -4.5275 13 8 4.5897 -5.8815 -2.0539 14 6 2.2478 -5.8848 -3.3324 15 6 2.0530 -7.3903 -3.5239 16 6 3.0122 -8.2714 -2.7659 17 1 3.9600 -8.5428 -3.2071 18 6 2.6800 -8.7311 -1.5092 19 7 3.4614 -9.5936 -0.8967 20 14 1.1200 -8.1289 -0.6767 21 1 0.0107 -9.0744 -0.9607 22 1 1.3402 -8.0505 0.7899 23 1 0.7689 -6.7831 -1.1971 24 6 1.5852 -7.8729 -4.8984 25 6 0.6222 -7.8994 -3.7097 26 6 1.9952 -0.7707 -1.1338 27 1 -0.3633 -1.0249 0.0754 28 1 -0.3634 0.5778 0.8499 29 1 -0.3635 0.4471 -0.9253 30 1 1.7323 1.8609 -0.9376 31 1 1.5634 1.9257 0.8329 32 1 3.9098 2.3513 0.1310 33 1 3.7813 0.8568 1.0906 34 1 3.8886 1.0356 -1.9561 35 1 5.1998 0.4725 -0.8913 36 1 3.7312 -1.1914 -3.1403 37 1 5.1576 -1.6513 -2.1801 38 1 3.8988 -3.5627 -1.2258 39 1 2.4724 -3.1027 -2.1861 40 1 4.4760 -3.3772 -4.0486 41 1 1.7928 -5.5764 -2.3912 42 1 1.7761 -5.3497 -4.1565 43 1 3.2278 -9.9167 -0.0125 44 1 1.4159 -7.1178 -5.6661 45 1 1.9713 -8.8278 -5.2547 46 1 0.3749 -8.8719 -3.2840 47 1 -0.1803 -7.1620 -3.6951 48 1 1.5634 -1.7715 -1.1243 49 1 1.7326 -0.2707 -2.0661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577997700.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:45 Heat of formation + Delta-G solvation = -57.684325 kcal Electronic energy + Delta-G solvation = -27519.821109 eV Core-core repulsion = 23802.191908 eV Total energy + Delta-G solvation = -3717.629200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.54208 -37.10799 -36.36145 -35.99527 -34.96174 -33.89547 -32.17649 -32.02436 -28.51313 -27.89615 -27.04209 -25.52249 -23.97278 -22.83913 -21.72982 -21.30972 -20.01998 -19.52227 -18.54325 -17.00072 -16.52581 -16.24123 -15.88828 -15.63793 -15.22724 -14.97203 -14.89028 -14.69167 -14.20492 -14.09691 -13.82991 -13.67184 -13.20352 -12.95999 -12.67823 -12.64137 -12.57120 -12.50033 -12.29668 -11.91266 -11.52061 -11.29553 -11.28410 -11.23640 -11.10943 -11.03323 -10.81794 -10.81047 -10.59297 -10.54429 -10.40256 -10.34508 -10.06968 -9.73667 -9.24243 -9.07954 -8.64570 -8.60817 -8.46840 -6.18202 -4.29367 1.07720 3.23925 3.32611 3.35403 3.51849 3.64292 4.35378 4.38811 4.53564 4.53743 4.61055 4.75695 4.78747 4.98039 4.98969 5.04495 5.08208 5.12451 5.15338 5.15993 5.27417 5.34269 5.39166 5.41327 5.48994 5.59502 5.62767 5.64503 5.68199 5.75279 5.79075 5.84702 5.92023 5.99360 6.04093 6.06309 6.17900 6.20017 6.25955 6.41296 6.61560 6.78567 6.80948 6.83376 7.06607 7.27371 7.59862 8.34475 8.85300 9.43912 10.93367 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.003523 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.830160 B = 7946.368774 C = 8678.712037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.055 3.945 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.086 4.086 7 H 0.086 0.914 8 C -0.119 4.119 9 C 0.112 3.888 10 N -1.138 6.138 11 S 2.628 3.372 12 O -0.968 6.968 13 O -0.935 6.935 14 C -0.585 4.585 15 C 0.010 3.990 16 C -0.536 4.536 17 H 0.088 0.912 18 C 0.101 3.899 19 N -0.873 5.873 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.258 1.258 24 C -0.173 4.173 25 C -0.189 4.189 26 C 0.055 3.945 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.409 0.591 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.269 0.731 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 22.978 -0.480 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.073 4.073 4 C -0.156 4.156 5 C -0.153 4.153 6 C -0.105 4.105 7 H 0.105 0.895 8 C -0.158 4.158 9 C -0.015 4.015 10 N -0.895 5.895 11 S 2.723 3.277 12 O -0.959 6.959 13 O -0.924 6.924 14 C -0.715 4.715 15 C 0.008 3.992 16 C -0.573 4.573 17 H 0.105 0.895 18 C -0.106 4.106 19 N -0.507 5.507 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.183 1.183 24 C -0.211 4.211 25 C -0.227 4.227 26 C -0.073 4.073 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.241 0.759 41 H 0.138 0.862 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.951 21.970 0.321 22.325 hybrid contribution -1.836 1.091 -0.548 2.205 sum -5.787 23.062 -0.228 23.778 Atomic orbital electron populations 1.22362 0.87182 1.02564 1.00277 1.61888 1.07598 1.13616 1.43705 1.22104 0.95811 0.89214 1.00194 1.21590 0.94295 1.00069 0.99610 1.21627 1.00203 0.95120 0.98378 1.21194 0.94038 0.95948 0.99356 0.89520 1.21795 1.01681 0.93983 0.98384 1.21334 0.97826 0.92679 0.89621 1.56138 1.77423 1.27611 1.28280 1.04561 0.77640 0.70998 0.74541 1.93501 1.74428 1.81052 1.46886 1.93570 1.74407 1.79961 1.44485 1.30314 1.25626 1.06710 1.08885 1.18742 0.95252 0.87632 0.97609 1.20417 1.03950 1.31658 1.01288 0.89459 1.24927 0.96365 0.92919 0.96376 1.69879 1.37646 1.28623 1.14524 0.86890 0.83505 0.80529 0.78574 1.20214 1.21461 1.18264 1.22965 1.04473 1.02662 0.90955 1.22944 0.93260 1.02249 1.04289 1.22273 0.95292 0.98560 0.91136 0.91080 0.91418 0.95807 0.95136 0.90940 0.91583 0.90893 0.92271 0.91438 0.91399 0.90540 0.89918 0.92278 0.75887 0.86159 0.87543 0.92127 0.90606 0.88771 0.88993 0.90723 0.90152 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.59 60.06 0.58 0.77 16 2 N -0.54 -5.13 4.91 -242.96 -1.19 -6.32 16 3 C 0.05 0.43 5.46 -3.83 -0.02 0.41 16 4 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 5 C -0.12 -0.90 5.29 -26.61 -0.14 -1.04 16 6 C -0.09 -0.78 2.35 -90.54 -0.21 -0.99 16 7 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 8 C -0.12 -1.12 4.83 -26.73 -0.13 -1.25 16 9 C 0.11 1.39 5.89 -4.04 -0.02 1.36 16 10 N -1.14 -16.35 5.89 -10.61 -0.06 -16.41 16 11 S 2.63 53.84 4.60 -107.50 -0.49 53.35 16 12 O -0.97 -22.20 18.08 -57.54 -1.04 -23.24 16 13 O -0.93 -23.15 16.72 -57.54 -0.96 -24.11 16 14 C -0.58 -11.40 6.05 37.16 0.22 -11.17 16 15 C 0.01 0.24 1.11 -155.66 -0.17 0.06 16 16 C -0.54 -15.14 7.55 -34.44 -0.26 -15.40 16 17 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 18 C 0.10 2.92 5.46 -17.82 -0.10 2.82 16 19 N -0.87 -26.76 13.96 55.43 0.77 -25.98 16 20 Si 0.88 21.42 24.98 -169.99 -4.25 17.18 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.26 -5.75 5.46 56.52 0.31 -5.44 16 24 C -0.17 -3.56 9.88 -26.73 -0.26 -3.82 16 25 C -0.19 -3.94 7.54 -26.73 -0.20 -4.15 16 26 C 0.06 0.52 4.48 -3.84 -0.02 0.50 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.14 7.70 -51.93 -0.40 0.74 16 39 H 0.06 0.64 6.59 -51.93 -0.34 0.30 16 40 H 0.41 4.86 8.62 -34.47 -0.30 4.56 16 41 H 0.12 2.23 6.56 -51.93 -0.34 1.89 16 42 H 0.11 1.66 7.95 -51.93 -0.41 1.24 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 45 H 0.09 1.96 8.14 -51.93 -0.42 1.53 16 46 H 0.09 2.01 7.01 -51.93 -0.36 1.64 16 47 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.08 0.79 6.59 -51.92 -0.34 0.44 16 49 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -34.88 387.87 -11.19 -46.07 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.90 Total: 6.55 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: -0.90 Total: -32.93 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.48 Total: -48.71 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -2.00 Total: -47.35 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.25 Total: 17.18 kcal Atomic # 16 Polarization: 53.84 SS G_CDS: -0.49 Total: 53.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.88 -11.19 -46.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577997700.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.613 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds