Wall clock time and date at job start Tue Mar 31 2020 18:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46854 * 110.99732 * 2 1 4 4 C 1.53043 * 109.51966 * 185.84001 * 3 2 1 5 5 C 1.53120 * 109.27781 * 300.81932 * 4 3 2 6 6 C 1.53121 * 109.15939 * 57.65583 * 5 4 3 7 7 H 1.08998 * 109.50279 * 62.32957 * 6 5 4 8 8 C 1.53003 * 109.50070 * 182.40227 * 6 5 4 9 9 C 1.52993 * 109.46885 * 184.99939 * 8 6 5 10 10 N 1.46503 * 109.47308 * 180.02562 * 9 8 6 11 11 S 1.65597 * 120.00326 * 165.00034 * 10 9 8 12 12 O 1.42101 * 104.27784 * 181.07200 * 11 10 9 13 13 O 1.42099 * 104.27697 * 308.92978 * 11 10 9 14 14 C 1.81403 * 104.44895 * 65.00328 * 11 10 9 15 15 C 1.52992 * 109.47168 * 173.81303 * 14 11 10 16 16 C 1.50700 * 115.55244 * 65.19402 * 15 14 11 17 17 H 1.08000 * 119.99736 * 264.78533 * 16 15 14 18 18 C 1.37877 * 119.99885 * 84.78568 * 16 15 14 19 19 N 1.31513 * 120.00026 * 352.23187 * 18 16 15 20 20 Si 1.86796 * 119.99737 * 172.23570 * 18 16 15 21 21 H 1.48499 * 109.47314 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47422 * 119.99566 * 20 18 16 23 23 H 1.48503 * 109.47120 * 239.99599 * 20 18 16 24 24 C 1.53002 * 117.49772 * 279.52161 * 15 14 11 25 25 C 1.53003 * 117.49991 * 210.86391 * 15 14 11 26 26 C 1.46842 * 111.00271 * 124.20959 * 2 1 3 27 27 H 1.09002 * 109.47120 * 63.95586 * 1 2 3 28 28 H 1.08999 * 109.47113 * 183.95039 * 1 2 3 29 29 H 1.08997 * 109.47280 * 303.95318 * 1 2 3 30 30 H 1.08996 * 109.46148 * 65.82647 * 3 2 1 31 31 H 1.08991 * 109.45276 * 305.84491 * 3 2 1 32 32 H 1.09006 * 109.49971 * 180.88242 * 4 3 2 33 33 H 1.09000 * 109.53733 * 60.78135 * 4 3 2 34 34 H 1.09006 * 109.52367 * 297.75141 * 5 4 3 35 35 H 1.08996 * 109.52313 * 177.56263 * 5 4 3 36 36 H 1.09003 * 109.47129 * 65.00369 * 8 6 5 37 37 H 1.09003 * 109.47258 * 305.00082 * 8 6 5 38 38 H 1.08999 * 109.47228 * 60.00629 * 9 8 6 39 39 H 1.08995 * 109.47817 * 300.00491 * 9 8 6 40 40 H 0.97003 * 119.99853 * 345.00329 * 10 9 8 41 41 H 1.08998 * 109.47077 * 293.81552 * 14 11 10 42 42 H 1.09001 * 109.47108 * 53.81292 * 14 11 10 43 43 H 0.97002 * 119.99973 * 185.02370 * 19 18 16 44 44 H 1.09001 * 117.50022 * 0.02562 * 24 15 14 45 45 H 1.09006 * 117.49849 * 145.01999 * 24 15 14 46 46 H 1.08994 * 117.50142 * 214.97690 * 25 15 14 47 47 H 1.09000 * 117.49603 * 359.97438 * 25 15 14 48 48 H 1.08997 * 109.46452 * 54.14218 * 26 2 1 49 49 H 1.09005 * 109.46231 * 294.18016 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0144 6 6 3.5181 -0.8714 1.0208 7 1 3.7820 -1.3838 0.0957 8 6 4.0681 -1.6558 2.2139 9 6 3.5658 -3.0995 2.1502 10 7 4.0918 -3.8505 3.2928 11 16 3.4328 -5.3154 3.6952 12 8 4.1638 -5.7252 4.8427 13 8 2.0362 -5.0633 3.7677 14 6 3.8138 -6.3867 2.2817 15 6 3.3876 -7.8212 2.5996 16 6 1.9062 -8.0356 2.7748 17 1 1.4713 -8.0175 3.7632 18 6 1.1063 -8.2547 1.6734 19 7 1.6043 -8.1259 0.4630 20 14 -0.6846 -8.7345 1.9005 21 1 -0.9961 -8.8129 3.3503 22 1 -1.5551 -7.7152 1.2612 23 1 -0.9264 -10.0573 1.2704 24 6 4.3301 -8.6636 3.4615 25 6 4.1952 -8.9552 1.9649 26 6 1.9953 -0.7707 1.1337 27 1 -0.3633 0.4512 -0.9233 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3634 0.5739 0.8524 30 1 1.7324 1.8609 0.9376 31 1 1.5634 1.9255 -0.8331 32 1 3.9099 2.3514 -0.1310 33 1 3.7820 0.8572 -1.0907 34 1 3.8887 1.0355 1.9561 35 1 5.1997 0.4715 0.8905 36 1 3.7281 -1.1934 3.1406 37 1 5.1576 -1.6484 2.1824 38 1 3.9057 -3.5619 1.2236 39 1 2.4763 -3.1070 2.1815 40 1 4.8262 -3.4895 3.8138 41 1 3.2746 -6.0338 1.4026 42 1 4.8856 -6.3612 2.0850 43 1 1.0253 -8.2082 -0.3109 44 1 5.2537 -8.1956 3.8024 45 1 3.8788 -9.3731 4.1551 46 1 3.6552 -9.8564 1.6745 47 1 5.0299 -8.6791 1.3205 48 1 1.5635 -1.7715 1.1242 49 1 1.7324 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577997701.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:50 Heat of formation + Delta-G solvation = -64.329200 kcal Electronic energy + Delta-G solvation = -27378.840926 eV Core-core repulsion = 23660.923583 eV Total energy + Delta-G solvation = -3717.917344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -39.44633 -36.74090 -36.34184 -35.97578 -35.03552 -33.81585 -32.03132 -31.96101 -28.14608 -27.81751 -26.93063 -25.43960 -23.89016 -22.74340 -21.23920 -21.19767 -19.93743 -19.61683 -18.58706 -16.88779 -16.46566 -16.15111 -15.69458 -15.60071 -15.09531 -14.79656 -14.70353 -14.60518 -14.28563 -14.05712 -13.76864 -13.59357 -13.13773 -13.07331 -12.51400 -12.38464 -12.13817 -12.07200 -11.90985 -11.80763 -11.40217 -11.34021 -11.23994 -11.16364 -11.09806 -10.99861 -10.93730 -10.77377 -10.55682 -10.47241 -10.44466 -10.27823 -10.09261 -9.69369 -9.15102 -8.93816 -8.55971 -8.49067 -8.07382 -6.12861 -4.23120 1.11326 3.29226 3.37135 3.44503 3.49303 3.75274 4.38413 4.44338 4.59358 4.61334 4.65020 4.85194 5.01364 5.07025 5.12498 5.16210 5.18654 5.22396 5.26076 5.28648 5.37103 5.42140 5.50842 5.54140 5.61996 5.70231 5.75043 5.77092 5.78703 5.84302 5.88154 5.97035 6.00478 6.12753 6.22588 6.27371 6.32357 6.39222 6.62879 6.73491 6.90082 6.92778 6.99886 7.24342 7.32665 7.40322 7.81943 8.21954 8.82668 9.47987 10.94903 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.003528 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.380241 B = 7933.814794 C = 9229.335728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.543 5.543 3 C 0.054 3.946 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.084 4.084 7 H 0.085 0.915 8 C -0.119 4.119 9 C 0.113 3.887 10 N -1.134 6.134 11 S 2.607 3.393 12 O -0.976 6.976 13 O -0.951 6.951 14 C -0.554 4.554 15 C 0.043 3.957 16 C -0.515 4.515 17 H 0.069 0.931 18 C 0.082 3.918 19 N -0.874 5.874 20 Si 0.892 3.108 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.283 1.283 24 C -0.208 4.208 25 C -0.141 4.141 26 C 0.053 3.947 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.024 0.976 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.408 0.592 41 H 0.133 0.867 42 H 0.099 0.901 43 H 0.263 0.737 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.173 17.944 -2.309 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.074 4.074 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.103 4.103 7 H 0.103 0.897 8 C -0.159 4.159 9 C -0.013 4.013 10 N -0.891 5.891 11 S 2.704 3.296 12 O -0.967 6.967 13 O -0.941 6.941 14 C -0.687 4.687 15 C 0.041 3.959 16 C -0.552 4.552 17 H 0.087 0.913 18 C -0.123 4.123 19 N -0.510 5.510 20 Si 0.719 3.281 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.209 1.209 24 C -0.246 4.246 25 C -0.181 4.181 26 C -0.075 4.075 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.240 0.760 41 H 0.151 0.849 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.085 0.915 48 H 0.102 0.898 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.639 17.423 -2.234 18.167 hybrid contribution -0.611 0.279 0.171 0.693 sum 4.028 17.702 -2.063 18.271 Atomic orbital electron populations 1.22371 0.87081 1.02450 1.00547 1.61893 1.07714 1.13430 1.43712 1.22102 0.95697 0.89396 1.00183 1.21583 0.94420 0.99967 0.99517 1.21632 0.99986 0.95266 0.98441 1.21170 0.94266 0.95790 0.99114 0.89671 1.21799 1.01090 0.94297 0.98670 1.21333 0.99661 0.92015 0.88304 1.55973 1.51254 1.38965 1.42919 1.05104 0.74359 0.73392 0.76708 1.93500 1.73929 1.81965 1.47279 1.93527 1.31111 1.83042 1.86426 1.29971 1.07571 1.12344 1.18809 1.18284 0.92958 0.84723 0.99951 1.20568 0.89452 1.51255 0.93961 0.91314 1.24946 0.98642 0.93703 0.94993 1.69985 1.35478 1.47811 0.97691 0.86526 0.84571 0.78147 0.78893 1.19237 1.20634 1.20852 1.23197 1.01126 1.05801 0.94451 1.22551 1.01107 1.01650 0.92761 1.22298 0.95118 0.98885 0.91191 0.91434 0.90901 0.95771 0.95134 0.90991 0.91674 0.90967 0.92253 0.91602 0.91234 0.90943 0.91712 0.90173 0.75975 0.84861 0.88284 0.92777 0.90692 0.89545 0.89602 0.91540 0.89765 0.94737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.62 60.06 0.58 0.81 16 2 N -0.54 -5.79 4.91 -242.97 -1.19 -6.98 16 3 C 0.05 0.48 5.46 -3.83 -0.02 0.46 16 4 C -0.12 -0.93 6.09 -26.65 -0.16 -1.09 16 5 C -0.12 -0.94 5.29 -26.61 -0.14 -1.08 16 6 C -0.08 -0.81 2.35 -90.54 -0.21 -1.03 16 7 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 8 C -0.12 -1.18 4.83 -26.73 -0.13 -1.31 16 9 C 0.11 1.48 5.89 -4.04 -0.02 1.45 16 10 N -1.13 -16.62 5.89 -10.62 -0.06 -16.68 16 11 S 2.61 52.54 5.19 -107.50 -0.56 51.99 16 12 O -0.98 -21.50 18.08 -57.54 -1.04 -22.54 16 13 O -0.95 -22.62 17.16 -57.54 -0.99 -23.61 16 14 C -0.55 -11.59 5.93 37.15 0.22 -11.37 16 15 C 0.04 1.05 1.32 -155.66 -0.21 0.85 16 16 C -0.52 -14.12 8.18 -34.44 -0.28 -14.40 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 19 N -0.87 -23.98 12.98 55.43 0.72 -23.26 16 20 Si 0.89 21.42 29.55 -169.99 -5.02 16.39 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 C -0.21 -4.60 9.96 -26.69 -0.27 -4.87 16 25 C -0.14 -3.23 9.49 -26.69 -0.25 -3.49 16 26 C 0.05 0.58 4.48 -3.84 -0.02 0.56 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.16 6.14 -51.93 -0.32 0.84 16 40 H 0.41 4.95 8.62 -34.47 -0.30 4.65 16 41 H 0.13 2.88 8.14 -51.92 -0.42 2.46 16 42 H 0.10 1.75 8.09 -51.92 -0.42 1.33 16 43 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 44 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 46 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.08 1.02 6.51 -51.93 -0.34 0.69 16 49 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -32.52 399.42 -12.08 -44.60 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.95 Total: 6.43 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: -1.01 Total: -32.36 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.54 Total: -46.92 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -2.03 Total: -46.15 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 52.54 SS G_CDS: -0.56 Total: 51.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.52 -12.08 -44.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577997701.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.726 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds