Wall clock time and date at job start Tue Mar 31 2020 18:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46854 * 110.99732 * 2 1 4 4 C 1.53043 * 109.51966 * 185.84001 * 3 2 1 5 5 C 1.53120 * 109.27781 * 300.81932 * 4 3 2 6 6 C 1.53121 * 109.15939 * 57.65583 * 5 4 3 7 7 H 1.08998 * 109.50279 * 62.32957 * 6 5 4 8 8 C 1.53003 * 109.50070 * 182.40227 * 6 5 4 9 9 C 1.52993 * 109.46885 * 184.99939 * 8 6 5 10 10 N 1.46503 * 109.47308 * 180.02562 * 9 8 6 11 11 S 1.65597 * 120.00326 * 165.00034 * 10 9 8 12 12 O 1.42101 * 104.27784 * 181.07200 * 11 10 9 13 13 O 1.42099 * 104.27697 * 308.92978 * 11 10 9 14 14 C 1.81403 * 104.44895 * 65.00328 * 11 10 9 15 15 C 1.52992 * 109.47168 * 173.81303 * 14 11 10 16 16 C 1.50700 * 115.55244 * 65.19402 * 15 14 11 17 17 H 1.08000 * 119.99736 * 264.78533 * 16 15 14 18 18 C 1.37877 * 119.99885 * 84.78568 * 16 15 14 19 19 N 1.31513 * 120.00026 * 352.23187 * 18 16 15 20 20 Si 1.86796 * 119.99737 * 172.23570 * 18 16 15 21 21 H 1.48499 * 109.47314 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47422 * 119.99566 * 20 18 16 23 23 H 1.48503 * 109.47120 * 239.99599 * 20 18 16 24 24 C 1.53002 * 117.49772 * 279.52161 * 15 14 11 25 25 C 1.53003 * 117.49991 * 210.86391 * 15 14 11 26 26 C 1.46842 * 111.00271 * 124.20959 * 2 1 3 27 27 H 1.09002 * 109.47120 * 63.95586 * 1 2 3 28 28 H 1.08999 * 109.47113 * 183.95039 * 1 2 3 29 29 H 1.08997 * 109.47280 * 303.95318 * 1 2 3 30 30 H 1.08996 * 109.46148 * 65.82647 * 3 2 1 31 31 H 1.08991 * 109.45276 * 305.84491 * 3 2 1 32 32 H 1.09006 * 109.49971 * 180.88242 * 4 3 2 33 33 H 1.09000 * 109.53733 * 60.78135 * 4 3 2 34 34 H 1.09006 * 109.52367 * 297.75141 * 5 4 3 35 35 H 1.08996 * 109.52313 * 177.56263 * 5 4 3 36 36 H 1.09003 * 109.47129 * 65.00369 * 8 6 5 37 37 H 1.09003 * 109.47258 * 305.00082 * 8 6 5 38 38 H 1.08999 * 109.47228 * 60.00629 * 9 8 6 39 39 H 1.08995 * 109.47817 * 300.00491 * 9 8 6 40 40 H 0.97003 * 119.99853 * 345.00329 * 10 9 8 41 41 H 1.08998 * 109.47077 * 293.81552 * 14 11 10 42 42 H 1.09001 * 109.47108 * 53.81292 * 14 11 10 43 43 H 0.97002 * 119.99973 * 185.02370 * 19 18 16 44 44 H 1.09001 * 117.50022 * 0.02562 * 24 15 14 45 45 H 1.09006 * 117.49849 * 145.01999 * 24 15 14 46 46 H 1.08994 * 117.50142 * 214.97690 * 25 15 14 47 47 H 1.09000 * 117.49603 * 359.97438 * 25 15 14 48 48 H 1.08997 * 109.46452 * 54.14218 * 26 2 1 49 49 H 1.09005 * 109.46231 * 294.18016 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0144 6 6 3.5181 -0.8714 1.0208 7 1 3.7820 -1.3838 0.0957 8 6 4.0681 -1.6558 2.2139 9 6 3.5658 -3.0995 2.1502 10 7 4.0918 -3.8505 3.2928 11 16 3.4328 -5.3154 3.6952 12 8 4.1638 -5.7252 4.8427 13 8 2.0362 -5.0633 3.7677 14 6 3.8138 -6.3867 2.2817 15 6 3.3876 -7.8212 2.5996 16 6 1.9062 -8.0356 2.7748 17 1 1.4713 -8.0175 3.7632 18 6 1.1063 -8.2547 1.6734 19 7 1.6043 -8.1259 0.4630 20 14 -0.6846 -8.7345 1.9005 21 1 -0.9961 -8.8129 3.3503 22 1 -1.5551 -7.7152 1.2612 23 1 -0.9264 -10.0573 1.2704 24 6 4.3301 -8.6636 3.4615 25 6 4.1952 -8.9552 1.9649 26 6 1.9953 -0.7707 1.1337 27 1 -0.3633 0.4512 -0.9233 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3634 0.5739 0.8524 30 1 1.7324 1.8609 0.9376 31 1 1.5634 1.9255 -0.8331 32 1 3.9099 2.3514 -0.1310 33 1 3.7820 0.8572 -1.0907 34 1 3.8887 1.0355 1.9561 35 1 5.1997 0.4715 0.8905 36 1 3.7281 -1.1934 3.1406 37 1 5.1576 -1.6484 2.1824 38 1 3.9057 -3.5619 1.2236 39 1 2.4763 -3.1070 2.1815 40 1 4.8262 -3.4895 3.8138 41 1 3.2746 -6.0338 1.4026 42 1 4.8856 -6.3612 2.0850 43 1 1.0253 -8.2082 -0.3109 44 1 5.2537 -8.1956 3.8024 45 1 3.8788 -9.3731 4.1551 46 1 3.6552 -9.8564 1.6745 47 1 5.0299 -8.6791 1.3205 48 1 1.5635 -1.7715 1.1242 49 1 1.7324 -0.2708 2.0660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577997701.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:49 Heat of formation + Delta-G solvation = -87.089582 kcal Electronic energy + Delta-G solvation = -27379.827890 eV Core-core repulsion = 23660.923583 eV Total energy + Delta-G solvation = -3718.904308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.21085 -38.55890 -37.95839 -37.11430 -36.73857 -34.68645 -34.08243 -32.77931 -29.84165 -28.75329 -27.68501 -27.48199 -24.77758 -23.53137 -22.98629 -22.09248 -21.46331 -20.63810 -20.15117 -18.40893 -18.31930 -17.31294 -16.84570 -16.69564 -16.60029 -16.46547 -15.88147 -15.59677 -15.47093 -15.29159 -14.99581 -14.89087 -14.41614 -13.88210 -13.75970 -13.66436 -13.49962 -13.15143 -13.13583 -13.02397 -12.93886 -12.89833 -12.85181 -12.85056 -12.49783 -12.44130 -12.21481 -12.13526 -11.91847 -11.85989 -11.55451 -11.48605 -11.21196 -11.06041 -10.87024 -10.55038 -10.43936 -9.85245 -9.28868 -8.19338 -6.33653 -0.48737 1.36303 1.39803 1.50801 2.06568 2.39580 2.95038 2.99114 3.08027 3.39049 3.46689 3.71563 3.87205 3.90504 4.00048 4.15857 4.19138 4.30117 4.33981 4.39287 4.44024 4.51371 4.53122 4.58211 4.60288 4.61628 4.68732 4.79238 4.85577 4.87947 4.95015 4.98503 4.98664 5.01921 5.06882 5.14955 5.19877 5.22323 5.32782 5.37813 5.48085 5.55858 5.59452 5.72224 6.10476 6.17518 6.22421 6.24074 6.72554 7.38619 8.87850 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.003528 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.380241 B = 7933.814794 C = 9229.335728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.557 5.557 3 C 0.052 3.948 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.080 4.080 7 H 0.080 0.920 8 C -0.110 4.110 9 C 0.104 3.896 10 N -1.114 6.114 11 S 2.623 3.377 12 O -0.996 6.996 13 O -0.995 6.995 14 C -0.552 4.552 15 C 0.010 3.990 16 C -0.534 4.534 17 H 0.047 0.953 18 C 0.044 3.956 19 N -0.891 5.891 20 Si 0.934 3.066 21 H -0.273 1.273 22 H -0.276 1.276 23 H -0.271 1.271 24 C -0.197 4.197 25 C -0.138 4.138 26 C 0.051 3.949 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.423 0.577 41 H 0.122 0.878 42 H 0.134 0.866 43 H 0.265 0.735 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.063 0.937 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.854 19.518 -2.770 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.281 5.281 3 C -0.076 4.076 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.099 4.099 7 H 0.098 0.902 8 C -0.149 4.149 9 C -0.022 4.022 10 N -0.876 5.876 11 S 2.720 3.280 12 O -0.987 6.987 13 O -0.985 6.985 14 C -0.685 4.685 15 C 0.008 3.992 16 C -0.572 4.572 17 H 0.066 0.934 18 C -0.159 4.159 19 N -0.527 5.527 20 Si 0.760 3.240 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.234 4.234 25 C -0.178 4.178 26 C -0.077 4.077 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.260 0.740 41 H 0.141 0.859 42 H 0.153 0.847 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.081 0.919 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.330 18.990 -2.685 20.196 hybrid contribution -1.133 -0.177 0.312 1.188 sum 5.197 18.813 -2.374 19.661 Atomic orbital electron populations 1.22386 0.86985 1.01858 1.01316 1.61931 1.08064 1.14639 1.43479 1.22194 0.96549 0.88327 1.00531 1.21589 0.93571 1.00983 0.99104 1.21618 1.00729 0.93898 0.98711 1.21138 0.93206 0.96950 0.98654 0.90180 1.21765 1.02402 0.91810 0.98941 1.21563 0.98754 0.94010 0.87860 1.55417 1.51463 1.37050 1.43630 1.04308 0.73395 0.74116 0.76132 1.93461 1.73955 1.82933 1.48331 1.93475 1.34084 1.83979 1.86957 1.29863 1.09639 1.10428 1.18541 1.18415 0.91907 0.86834 1.02054 1.20732 0.91689 1.51618 0.93122 0.93435 1.25493 1.01576 0.93850 0.94979 1.70023 1.36407 1.48362 0.97930 0.85867 0.81276 0.78416 0.78478 1.19806 1.20178 1.19644 1.23248 1.01323 1.04862 0.93961 1.22511 1.01222 1.00310 0.93711 1.22278 0.96250 0.97860 0.91306 0.90216 0.92151 0.95477 0.95141 0.90145 0.89794 0.91496 0.91958 0.90099 0.90963 0.88570 0.90668 0.92188 0.74044 0.85928 0.84733 0.92535 0.88223 0.89999 0.91600 0.89309 0.91871 0.95111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.62 127.69 1.23 1.67 16 2 N -0.56 -11.56 4.91 -922.61 -4.53 -16.09 16 3 C 0.05 0.83 5.46 86.33 0.47 1.30 16 4 C -0.11 -1.54 6.09 30.65 0.19 -1.35 16 5 C -0.11 -1.53 5.29 30.67 0.16 -1.37 16 6 C -0.08 -1.42 2.35 -10.74 -0.03 -1.44 16 7 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 8 C -0.11 -1.94 4.83 30.59 0.15 -1.80 16 9 C 0.10 2.60 5.89 86.38 0.51 3.11 16 10 N -1.11 -30.91 5.89 -187.50 -1.10 -32.01 16 11 S 2.62 104.57 5.19 -56.49 -0.29 104.28 16 12 O -1.00 -42.96 18.08 -127.65 -2.31 -45.26 16 13 O -1.00 -48.37 17.16 -127.65 -2.19 -50.57 16 14 C -0.55 -22.55 5.93 71.98 0.43 -22.12 16 15 C 0.01 0.49 1.32 -52.93 -0.07 0.42 16 16 C -0.53 -29.79 8.18 25.60 0.21 -29.58 16 17 H 0.05 2.77 7.83 -2.91 -0.02 2.75 16 18 C 0.04 2.42 5.38 84.65 0.46 2.88 16 19 N -0.89 -49.12 12.98 21.45 0.28 -48.84 16 20 Si 0.93 44.31 29.55 68.60 2.03 46.34 16 21 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 24 C -0.20 -8.46 9.96 30.62 0.30 -8.15 16 25 C -0.14 -6.20 9.49 30.62 0.29 -5.91 16 26 C 0.05 1.11 4.48 86.32 0.39 1.50 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.29 8.02 -2.39 -0.02 1.27 16 29 H 0.03 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.08 1.14 8.12 -2.39 -0.02 1.13 16 32 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.77 6.14 -2.39 -0.01 1.75 16 40 H 0.42 9.22 8.62 -96.74 -0.83 8.39 16 41 H 0.12 5.28 8.14 -2.39 -0.02 5.26 16 42 H 0.13 4.40 8.09 -2.39 -0.02 4.38 16 43 H 0.27 13.88 8.32 -92.71 -0.77 13.11 16 44 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 45 H 0.08 3.54 8.14 -2.38 -0.02 3.52 16 46 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 47 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 48 H 0.06 1.61 6.51 -2.39 -0.02 1.60 16 49 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -70.04 399.42 -3.36 -73.40 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: 0.07 Total: 29.60 kcal Atomic # 6 Polarization: -65.54 SS G_CDS: 4.68 Total: -60.85 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -5.36 Total: -96.94 kcal Atomic # 8 Polarization: -91.33 SS G_CDS: -4.50 Total: -95.83 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 104.57 SS G_CDS: -0.29 Total: 104.28 kcal Total: -70.04 -3.36 -73.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577997701.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.688 kcal (2) G-P(sol) polarization free energy of solvation -70.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds