Wall clock time and date at job start Tue Mar 31 2020 16:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46895 * 2 1 4 4 C 1.52996 * 109.47379 * 120.00279 * 2 1 3 5 5 C 1.53000 * 109.47275 * 184.99820 * 4 2 1 6 6 N 1.46495 * 109.47519 * 180.02562 * 5 4 2 7 7 C 1.34772 * 120.00246 * 179.72512 * 6 5 4 8 8 O 1.21581 * 120.00094 * 355.01071 * 7 6 5 9 9 N 1.34778 * 120.00163 * 175.00699 * 7 6 5 10 10 C 1.46931 * 120.62983 * 4.94418 * 9 7 6 11 11 C 1.53623 * 108.54138 * 126.36327 * 10 9 7 12 12 C 1.53035 * 109.24286 * 54.86049 * 11 10 9 13 13 C 1.53007 * 109.46167 * 178.48822 * 12 11 10 14 14 C 1.50695 * 109.46931 * 295.06559 * 13 12 11 15 15 H 1.07999 * 120.00075 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00093 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99777 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00197 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47219 * 59.99723 * 18 16 14 20 20 H 1.48497 * 109.47105 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46904 * 299.99774 * 18 16 14 22 22 C 1.53040 * 109.53630 * 298.50499 * 12 11 10 23 23 C 1.46923 * 120.63508 * 185.21703 * 9 7 6 24 24 S 1.81394 * 109.46798 * 240.00651 * 2 1 3 25 25 C 1.81401 * 103.00360 * 54.99829 * 24 2 1 26 26 O 1.42104 * 109.47078 * 171.38631 * 24 2 1 27 27 H 1.09001 * 109.46895 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46820 * 299.99423 * 1 2 3 29 29 H 1.08991 * 109.47623 * 59.99196 * 1 2 3 30 30 H 1.09002 * 109.46955 * 65.00259 * 4 2 1 31 31 H 1.08998 * 109.47511 * 305.00218 * 4 2 1 32 32 H 1.09002 * 109.46770 * 60.00326 * 5 4 2 33 33 H 1.08998 * 109.47176 * 300.00603 * 5 4 2 34 34 H 0.97006 * 119.99410 * 359.97438 * 6 5 4 35 35 H 1.08998 * 109.58817 * 246.19836 * 10 9 7 36 36 H 1.09002 * 109.58571 * 6.62654 * 10 9 7 37 37 H 1.08996 * 109.63818 * 294.86386 * 11 10 9 38 38 H 1.09008 * 109.42566 * 174.72560 * 11 10 9 39 39 H 1.09001 * 109.45207 * 58.52094 * 12 11 10 40 40 H 1.08996 * 109.46693 * 55.06640 * 13 12 11 41 41 H 1.08994 * 109.46958 * 175.06897 * 13 12 11 42 42 H 0.97003 * 119.99672 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.49896 * 301.41650 * 22 12 11 44 44 H 1.09006 * 109.52588 * 181.33126 * 22 12 11 45 45 H 1.09007 * 109.58430 * 353.37935 * 23 9 7 46 46 H 1.09002 * 109.58532 * 113.65624 * 23 9 7 47 47 H 1.09002 * 109.47170 * 59.99939 * 25 24 2 48 48 H 1.08998 * 109.47064 * 179.97438 * 25 24 2 49 49 H 1.08998 * 109.46941 * 299.99689 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0534 -1.3045 2.5093 7 6 5.3747 -1.3451 2.7717 8 8 6.1677 -0.8880 1.9714 9 7 5.8170 -1.8924 3.9212 10 6 4.8821 -2.5450 4.8479 11 6 5.3932 -3.9642 5.1386 12 6 6.8334 -3.8867 5.6503 13 6 7.3347 -5.2949 5.9772 14 6 6.5334 -5.8603 7.1214 15 1 5.7451 -5.2742 7.5702 16 6 6.8066 -7.1259 7.5952 17 7 7.7662 -7.8399 7.0483 18 14 5.8128 -7.8272 9.0130 19 1 4.3794 -7.8892 8.6298 20 1 6.3003 -9.1933 9.3312 21 1 5.9692 -6.9561 10.2056 22 6 7.7261 -3.2648 4.5740 23 6 7.2423 -1.8426 4.2743 24 16 2.1345 -0.8549 -1.4812 25 6 1.3147 0.0377 -2.8309 26 8 3.5413 -0.6837 -1.5859 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 1.7517 -1.7716 1.2054 31 1 1.6055 -0.2619 2.1369 32 1 3.8532 0.4369 1.3573 33 1 3.9994 -1.0727 0.4258 34 1 3.4260 -1.7360 3.1103 35 1 4.8298 -1.9753 5.7757 36 1 3.8931 -2.5974 4.3926 37 1 5.3630 -4.5587 4.2255 38 1 4.7622 -4.4286 5.8966 39 1 6.8664 -3.2716 6.5496 40 1 7.2192 -5.9339 5.1018 41 1 8.3869 -5.2498 6.2579 42 1 7.9586 -8.7302 7.3820 43 1 7.6740 -3.8658 3.6662 44 1 8.7560 -3.2314 4.9296 45 1 7.8111 -1.4313 3.4403 46 1 7.3789 -1.2146 5.1547 47 1 1.6084 1.0870 -2.8037 48 1 1.6096 -0.3971 -3.7859 49 1 0.2338 -0.0402 -2.7142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578863849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:41 Heat of formation + Delta-G solvation = -82.522340 kcal Electronic energy + Delta-G solvation = -26449.227777 eV Core-core repulsion = 22730.521520 eV Total energy + Delta-G solvation = -3718.706257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.17437 -37.61472 -36.39879 -36.01753 -34.12694 -33.74735 -32.06455 -30.73411 -29.87844 -28.60107 -27.72370 -24.77211 -23.67052 -22.81456 -22.10396 -21.68900 -19.97519 -19.13489 -17.84082 -17.66469 -16.85278 -16.31032 -16.13782 -15.42004 -15.26477 -14.93004 -14.55272 -14.40597 -14.22479 -13.94710 -13.91379 -13.62506 -13.20295 -13.07411 -13.03982 -12.87035 -12.76891 -12.69297 -12.16889 -12.05413 -11.93613 -11.76917 -11.53349 -11.50647 -11.15601 -10.96413 -10.79502 -10.65016 -10.46459 -10.21766 -10.08633 -9.87162 -9.60037 -9.23549 -9.02197 -8.94571 -8.58920 -8.34379 -8.16213 -5.98712 -4.00893 1.12225 2.20090 2.79836 3.31820 3.37319 3.38441 3.39886 3.44211 3.94654 4.26957 4.41069 4.45436 4.67312 4.70953 4.79824 4.92522 4.97453 5.12738 5.18148 5.35677 5.36016 5.39099 5.40357 5.49333 5.51980 5.58529 5.63477 5.72113 5.75984 5.80321 5.93164 6.05305 6.16650 6.40371 6.45653 6.53498 6.55527 6.71367 7.00405 7.03468 7.13847 7.16682 7.68612 7.84126 8.01370 8.11215 8.43409 8.79487 9.05505 9.62573 11.12467 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.002196 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.708631 B =12745.999581 C =13391.448918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.411 4.411 3 H 0.092 0.908 4 C -0.105 4.105 5 C 0.116 3.884 6 N -0.750 5.750 7 C 0.705 3.295 8 O -0.594 6.594 9 N -0.623 5.623 10 C 0.110 3.890 11 C -0.118 4.118 12 C -0.080 4.080 13 C 0.027 3.973 14 C -0.516 4.516 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.130 4.130 23 C 0.130 3.870 24 S 1.240 4.760 25 C -0.492 4.492 26 O -0.835 6.835 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.395 0.605 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.060 0.940 47 H 0.079 0.921 48 H 0.105 0.895 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.452 14.660 -14.878 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.529 4.529 3 H 0.111 0.889 4 C -0.144 4.144 5 C -0.008 4.008 6 N -0.408 5.408 7 C 0.407 3.593 8 O -0.472 6.472 9 N -0.361 5.361 10 C -0.013 4.013 11 C -0.156 4.156 12 C -0.098 4.098 13 C -0.010 4.010 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.168 4.168 23 C 0.007 3.993 24 S 1.437 4.563 25 C -0.649 4.649 26 O -0.830 6.830 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.232 0.768 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.124 0.876 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.123 14.106 -15.524 27.720 hybrid contribution -0.322 1.564 1.132 1.958 sum -18.444 15.670 -14.392 28.158 Atomic orbital electron populations 1.21515 0.90877 1.03272 1.02859 1.27377 1.03643 1.09322 1.12558 0.88931 1.21481 0.94740 1.01411 0.96803 1.21539 0.92781 0.97750 0.88779 1.45202 1.06257 1.60992 1.28386 1.15830 0.82405 0.79159 0.81919 1.90906 1.54448 1.54163 1.47674 1.47343 1.09206 1.59560 1.19952 1.21880 0.91395 0.95277 0.92758 1.21972 0.98450 0.93417 1.01756 1.21175 0.93011 0.99961 0.95696 1.19122 0.96272 0.89151 0.96404 1.21196 1.17712 0.99993 1.16559 0.92685 1.25032 0.95327 0.97251 0.96921 1.69958 1.30599 1.11114 1.41756 0.86701 0.80428 0.78162 0.82931 1.20307 1.21399 1.20340 1.22039 0.99884 0.94720 1.00174 1.21536 0.79464 0.97910 1.00395 1.70725 0.89975 1.09640 0.85997 1.27697 1.10937 1.10758 1.15519 1.93225 1.24998 1.81482 1.83285 0.90784 0.91716 0.92010 0.89858 0.90185 0.92221 0.89417 0.76836 0.91635 0.91573 0.92233 0.89831 0.92402 0.96635 0.96582 0.92999 0.92040 0.91174 0.89646 0.92152 0.90132 0.87622 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.33 8.94 37.16 0.33 0.00 16 2 C -0.41 -2.27 2.89 -26.73 -0.08 -2.34 16 3 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 4 C -0.11 -0.71 4.80 -26.73 -0.13 -0.84 16 5 C 0.12 1.40 5.34 -4.04 -0.02 1.38 16 6 N -0.75 -9.69 5.46 -65.23 -0.36 -10.05 16 7 C 0.71 12.09 8.30 -86.92 -0.72 11.37 16 8 O -0.59 -12.67 15.77 5.29 0.08 -12.58 16 9 N -0.62 -9.92 2.97 -178.23 -0.53 -10.45 16 10 C 0.11 1.52 6.42 -3.48 -0.02 1.49 16 11 C -0.12 -2.03 5.21 -26.39 -0.14 -2.17 16 12 C -0.08 -1.56 2.10 -90.58 -0.19 -1.75 16 13 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 14 C -0.52 -13.94 8.39 -34.44 -0.29 -14.23 16 15 H 0.05 1.42 7.05 -52.49 -0.37 1.05 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.13 -2.30 5.36 -26.61 -0.14 -2.45 16 23 C 0.13 2.11 6.44 -3.71 -0.02 2.09 16 24 S 1.24 7.66 12.99 -107.50 -1.40 6.27 16 25 C -0.49 -2.20 10.14 101.05 1.02 -1.18 16 26 O -0.83 -11.61 15.80 -35.23 -0.56 -12.17 16 27 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.10 6.51 -51.93 -0.34 -0.24 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.30 5.58 -51.93 -0.29 1.01 16 34 H 0.40 3.93 5.96 -40.82 -0.24 3.69 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.72 5.64 -51.93 -0.29 0.43 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.50 6.91 -51.92 -0.36 1.14 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.47 7.00 -51.92 -0.36 1.11 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 48 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.11 0.18 6.90 -51.92 -0.36 -0.18 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -38.82 391.48 -10.27 -49.09 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.51 Total: 0.34 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -0.62 Total: -6.60 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.15 Total: -46.37 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.47 Total: -24.75 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 7.66 SS G_CDS: -1.40 Total: 6.27 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.82 -10.27 -49.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578863849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.427 kcal (2) G-P(sol) polarization free energy of solvation -38.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds