Wall clock time and date at job start Tue Mar 31 2020 18:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 120.00333 * 2 1 4 4 C 1.52989 * 109.47171 * 275.00160 * 3 2 1 5 5 H 1.09005 * 109.50832 * 305.07431 * 4 3 2 6 6 C 1.53126 * 109.50746 * 65.19320 * 4 3 2 7 7 C 1.53120 * 109.16091 * 177.59688 * 6 4 3 8 8 C 1.53038 * 109.27804 * 302.34195 * 7 6 4 9 9 N 1.46848 * 109.52195 * 59.18608 * 8 7 6 10 10 C 1.46894 * 111.00239 * 174.16273 * 9 8 7 11 11 C 1.53008 * 109.46651 * 308.43948 * 10 9 8 12 12 C 1.50695 * 115.54864 * 282.20996 * 11 10 9 13 13 H 1.08009 * 119.99919 * 120.62722 * 12 11 10 14 14 C 1.37877 * 120.00138 * 300.62078 * 12 11 10 15 15 N 1.31521 * 119.99800 * 155.38287 * 14 12 11 16 16 Si 1.86794 * 120.00226 * 335.38281 * 14 12 11 17 17 H 1.48499 * 109.46999 * 84.48457 * 16 14 12 18 18 H 1.48506 * 109.46874 * 204.48428 * 16 14 12 19 19 H 1.48501 * 109.47169 * 324.48183 * 16 14 12 20 20 C 1.53003 * 117.49489 * 136.50412 * 11 10 9 21 21 C 1.52996 * 117.49552 * 67.88444 * 11 10 9 22 22 C 1.46855 * 111.19635 * 298.25606 * 9 8 7 23 23 S 1.65599 * 119.99969 * 179.97438 * 2 1 3 24 24 C 1.81394 * 104.45241 * 270.00161 * 23 2 1 25 25 O 1.42098 * 104.27899 * 153.92951 * 23 2 1 26 26 O 1.42094 * 104.27605 * 26.07403 * 23 2 1 27 27 H 1.08995 * 109.47315 * 270.00376 * 1 2 3 28 28 H 1.09004 * 109.46598 * 30.00351 * 1 2 3 29 29 H 1.08998 * 109.46878 * 149.99566 * 1 2 3 30 30 H 1.09003 * 109.46636 * 35.00185 * 3 2 1 31 31 H 1.08994 * 109.47305 * 154.99507 * 3 2 1 32 32 H 1.08995 * 109.51933 * 297.50537 * 6 4 3 33 33 H 1.09000 * 109.51611 * 57.68999 * 6 4 3 34 34 H 1.09005 * 109.49878 * 182.40538 * 7 6 4 35 35 H 1.08996 * 109.53625 * 62.30964 * 7 6 4 36 36 H 1.09004 * 109.46582 * 299.17102 * 8 7 6 37 37 H 1.08996 * 109.45411 * 179.19065 * 8 7 6 38 38 H 1.08997 * 109.47545 * 68.43936 * 10 9 8 39 39 H 1.09003 * 109.47633 * 188.44371 * 10 9 8 40 40 H 0.96995 * 120.00233 * 185.00783 * 15 14 12 41 41 H 1.09000 * 117.50145 * 0.02562 * 20 11 10 42 42 H 1.09007 * 117.49571 * 145.02098 * 20 11 10 43 43 H 1.09000 * 117.49422 * 214.97559 * 21 11 10 44 44 H 1.08994 * 117.50564 * 359.97438 * 21 11 10 45 45 H 1.09001 * 109.45800 * 301.72734 * 22 9 8 46 46 H 1.09000 * 109.45417 * 181.75525 * 22 9 8 47 47 H 1.09004 * 109.47049 * 59.99586 * 24 23 2 48 48 H 1.09005 * 109.47102 * 300.00484 * 24 23 2 49 49 H 1.09001 * 109.47369 * 179.97438 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3437 1.7733 -1.4369 5 1 2.8107 1.0009 -2.0482 6 6 0.9615 2.1089 -2.0040 7 6 1.1218 2.6693 -3.4200 8 6 2.0281 3.9017 -3.3761 9 7 3.3379 3.5283 -2.8271 10 6 4.2788 4.6541 -2.8981 11 6 4.3010 5.2109 -4.3231 12 6 5.0977 4.4109 -5.3211 13 1 4.6143 4.0067 -6.1984 14 6 6.4437 4.1950 -5.1146 15 7 7.0337 3.1533 -5.6590 16 14 7.4293 5.3821 -4.0616 17 1 7.2845 5.0120 -2.6308 18 1 8.8616 5.3145 -4.4480 19 1 6.9253 6.7635 -4.2691 20 6 4.2854 6.7320 -4.4874 21 6 3.0384 5.9130 -4.8268 22 6 3.2146 3.0316 -1.4506 23 16 2.2930 -1.4341 0.0006 24 6 2.5193 -1.8254 1.7574 25 8 3.5395 -1.1194 -0.6047 26 8 1.3970 -2.3563 -0.6042 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6502 2.0043 0.5895 31 1 3.1858 1.1177 0.4344 32 1 0.3521 1.2059 -2.0364 33 1 0.4787 2.8528 -1.3703 34 1 0.1446 2.9500 -3.8129 35 1 1.5688 1.9115 -4.0634 36 1 1.5734 4.6645 -2.7440 37 1 2.1557 4.2945 -4.3847 38 1 3.9629 5.4359 -2.2074 39 1 5.2772 4.3110 -2.6265 40 1 7.9623 2.9606 -5.4555 41 1 4.2597 7.3360 -3.5804 42 1 4.8516 7.1544 -5.3176 43 1 2.7843 5.7965 -5.8804 44 1 2.1919 5.9779 -4.1434 45 1 2.7544 3.7986 -0.8276 46 1 4.2041 2.7927 -1.0609 47 1 1.5450 -1.9178 2.2375 48 1 3.0865 -1.0278 2.2371 49 1 3.0618 -2.7660 1.8532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602830149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:59 Heat of formation + Delta-G solvation = -18.382450 kcal Electronic energy + Delta-G solvation = -28179.770272 eV Core-core repulsion = 24463.845329 eV Total energy + Delta-G solvation = -3715.924943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.31078 -37.43854 -37.24817 -36.05099 -35.60366 -32.36326 -32.04513 -31.22789 -29.75921 -27.54609 -26.83554 -25.04367 -24.61274 -22.50848 -21.97329 -20.97848 -19.36185 -18.99624 -18.83393 -17.70253 -16.67611 -16.43045 -16.18667 -15.27998 -15.02665 -14.86868 -14.36978 -14.18931 -13.94342 -13.83407 -13.70021 -13.47999 -13.39637 -13.28010 -12.86577 -12.70215 -12.46071 -12.20688 -12.17633 -12.15109 -11.99879 -11.73240 -11.53572 -11.28837 -11.23507 -10.98544 -10.80776 -10.58196 -10.45844 -10.36211 -10.21381 -9.91715 -9.79327 -9.42193 -9.12864 -8.90499 -8.46512 -8.14920 -7.43882 -6.00738 -3.88396 0.05218 2.42851 3.34350 3.45284 3.53050 3.71608 3.91785 4.30208 4.42825 4.52753 4.60781 4.64309 4.90743 4.99093 5.10479 5.12836 5.23136 5.30980 5.34062 5.38363 5.44314 5.58424 5.60926 5.71687 5.74559 5.81865 5.90039 5.95806 5.97200 6.10917 6.13532 6.19856 6.24470 6.28053 6.36154 6.40678 6.48650 6.58249 6.61169 6.76056 6.78846 6.92750 7.17598 7.24455 7.85347 7.92571 7.98324 8.63741 9.07223 9.66817 11.09534 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.003522 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.147204 B = 7949.117728 C = 8802.665491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.998 5.998 3 C 0.131 3.869 4 C -0.104 4.104 5 H 0.093 0.907 6 C -0.115 4.115 7 C -0.119 4.119 8 C 0.042 3.958 9 N -0.511 5.511 10 C 0.094 3.906 11 C 0.017 3.983 12 C -0.482 4.482 13 H 0.073 0.927 14 C 0.089 3.911 15 N -0.879 5.879 16 Si 0.860 3.140 17 H -0.277 1.277 18 H -0.293 1.293 19 H -0.258 1.258 20 C -0.206 4.206 21 C -0.192 4.192 22 C 0.064 3.936 23 S 2.606 3.394 24 C -0.677 4.677 25 O -0.940 6.940 26 O -0.957 6.957 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.015 0.985 37 H 0.109 0.891 38 H 0.005 0.995 39 H 0.074 0.926 40 H 0.264 0.736 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.021 0.979 46 H 0.072 0.928 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.058 -5.348 17.465 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.836 5.836 3 C 0.005 3.995 4 C -0.124 4.124 5 H 0.111 0.889 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.085 4.085 9 N -0.235 5.235 10 C -0.033 4.033 11 C 0.016 3.984 12 C -0.519 4.519 13 H 0.091 0.909 14 C -0.115 4.115 15 N -0.515 5.515 16 Si 0.687 3.313 17 H -0.203 1.203 18 H -0.220 1.220 19 H -0.183 1.183 20 C -0.244 4.244 21 C -0.229 4.229 22 C -0.065 4.065 23 S 2.698 3.302 24 C -0.826 4.826 25 O -0.930 6.930 26 O -0.947 6.947 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.033 0.967 37 H 0.127 0.873 38 H 0.023 0.977 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.039 0.961 46 H 0.090 0.910 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.404 -6.285 16.355 22.060 hybrid contribution 0.269 1.430 1.951 2.434 sum -13.135 -4.855 18.306 23.048 Atomic orbital electron populations 1.21775 0.78661 1.04980 1.01551 1.57369 1.15102 1.21356 1.89762 1.21326 0.95959 0.84509 0.97670 1.21632 0.96332 0.98749 0.95716 0.88881 1.21768 0.96400 1.00089 0.96997 1.21630 0.98643 0.98838 0.96562 1.22703 0.88547 0.95009 1.02249 1.61633 1.09124 1.35069 1.17661 1.21907 0.95954 0.89583 0.95835 1.19361 0.96440 0.89358 0.93268 1.20002 0.92471 1.32168 1.07249 0.90941 1.24826 0.97748 0.94184 0.94751 1.70013 1.12967 1.24222 1.44276 0.87155 0.79098 0.84223 0.80839 1.20343 1.21997 1.18254 1.23226 1.02435 0.97306 1.01474 1.22981 0.91544 1.07645 1.00752 1.21990 0.99248 0.94899 0.90407 1.05127 0.74259 0.73423 0.77410 1.30610 1.11404 1.11975 1.28571 1.93685 1.43840 1.82606 1.72851 1.93587 1.64857 1.62778 1.73498 0.93219 0.89663 0.89882 0.90545 0.89997 0.91688 0.92887 0.92368 0.90864 0.96728 0.87329 0.97735 0.90791 0.92646 0.91782 0.89658 0.89744 0.90515 0.96057 0.91000 0.85704 0.85490 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 9.77 59.85 0.58 1.13 16 2 N -1.00 -9.11 3.03 -121.76 -0.37 -9.48 16 3 C 0.13 1.32 4.79 -4.04 -0.02 1.30 16 4 C -0.10 -1.45 2.56 -90.54 -0.23 -1.68 16 5 H 0.09 1.60 7.92 -51.93 -0.41 1.19 16 6 C -0.12 -1.45 4.07 -26.60 -0.11 -1.55 16 7 C -0.12 -1.78 6.09 -26.65 -0.16 -1.95 16 8 C 0.04 0.74 3.94 -3.83 -0.02 0.72 16 9 N -0.51 -10.16 4.77 -234.66 -1.12 -11.28 16 10 C 0.09 2.05 4.75 -3.82 -0.02 2.04 16 11 C 0.02 0.40 0.66 -155.66 -0.10 0.29 16 12 C -0.48 -13.53 9.29 -34.44 -0.32 -13.85 16 13 H 0.07 2.24 8.06 -52.48 -0.42 1.81 16 14 C 0.09 2.56 5.26 -17.82 -0.09 2.47 16 15 N -0.88 -27.00 13.95 55.43 0.77 -26.23 16 16 Si 0.86 21.47 25.77 -169.99 -4.38 17.09 16 17 H -0.28 -6.74 6.65 56.52 0.38 -6.36 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.26 -6.18 6.33 56.52 0.36 -5.82 16 20 C -0.21 -4.38 8.20 -26.73 -0.22 -4.60 16 21 C -0.19 -3.85 7.24 -26.73 -0.19 -4.05 16 22 C 0.06 1.03 4.74 -3.83 -0.02 1.01 16 23 S 2.61 26.49 6.01 -107.50 -0.65 25.85 16 24 C -0.68 -3.89 10.99 101.05 1.11 -2.78 16 25 O -0.94 -13.80 16.76 -57.54 -0.96 -14.77 16 26 O -0.96 -12.47 16.57 -57.54 -0.95 -13.43 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.60 5.42 -51.93 -0.28 0.32 16 29 H 0.08 0.65 6.91 -51.93 -0.36 0.29 16 30 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 31 H 0.08 0.77 7.61 -51.93 -0.40 0.37 16 32 H 0.06 0.74 5.73 -51.93 -0.30 0.44 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.01 0.24 7.70 -51.93 -0.40 -0.16 16 37 H 0.11 2.09 4.25 -51.93 -0.22 1.87 16 38 H 0.00 0.09 7.97 -51.93 -0.41 -0.32 16 39 H 0.07 1.76 5.78 -51.93 -0.30 1.46 16 40 H 0.26 7.64 8.32 -40.82 -0.34 7.30 16 41 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 42 H 0.08 1.88 8.09 -51.92 -0.42 1.46 16 43 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 44 H 0.08 1.37 6.01 -51.93 -0.31 1.06 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 47 H 0.12 0.50 8.14 -51.92 -0.42 0.08 16 48 H 0.13 0.59 8.14 -51.92 -0.42 0.16 16 49 H 0.13 0.61 8.14 -51.92 -0.42 0.19 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -35.34 376.67 -10.29 -45.64 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -8.51 Total: 2.44 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 0.19 Total: -21.50 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.71 Total: -46.99 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.92 Total: -28.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.38 Total: 17.09 kcal Atomic # 16 Polarization: 26.49 SS G_CDS: -0.65 Total: 25.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.34 -10.29 -45.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602830149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.253 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds