Wall clock time and date at job start Tue Mar 31 2020 15:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00214 * 2 1 4 4 C 1.53011 * 109.46956 * 293.95516 * 3 2 1 5 5 C 1.52999 * 109.47232 * 180.02562 * 4 3 2 6 6 S 1.80991 * 109.47017 * 179.97438 * 5 4 3 7 7 C 1.76201 * 99.99926 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00055 * 359.97438 * 7 6 5 9 9 C 1.38807 * 120.00140 * 180.02562 * 7 6 5 10 10 N 1.31628 * 119.99724 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00149 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46770 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47351 * 119.99758 * 11 9 7 14 14 H 1.48501 * 109.47228 * 240.00181 * 11 9 7 15 15 C 1.46902 * 110.99917 * 123.95416 * 2 1 3 16 16 C 1.53492 * 114.20760 * 56.04496 * 15 2 1 17 17 N 1.47066 * 87.98733 * 139.85200 * 16 15 2 18 18 C 1.34780 * 136.06263 * 152.62087 * 17 16 15 19 19 O 1.21510 * 119.99558 * 359.97438 * 18 17 16 20 20 O 1.34630 * 120.00318 * 180.02562 * 18 17 16 21 21 C 1.45202 * 116.99916 * 180.02562 * 20 18 17 22 22 C 1.52995 * 109.47421 * 59.99637 * 21 20 18 23 23 C 1.53008 * 109.46804 * 179.97438 * 21 20 18 24 24 C 1.52998 * 109.46950 * 299.99195 * 21 20 18 25 25 C 1.47067 * 87.88528 * 332.87766 * 17 16 15 26 26 H 1.09006 * 109.47086 * 296.04546 * 1 2 3 27 27 H 1.08998 * 109.47138 * 56.04505 * 1 2 3 28 28 H 1.08996 * 109.46984 * 176.05010 * 1 2 3 29 29 H 1.08991 * 109.47239 * 53.95077 * 3 2 1 30 30 H 1.09000 * 109.47218 * 173.95971 * 3 2 1 31 31 H 1.09001 * 109.46856 * 300.00001 * 4 3 2 32 32 H 1.09000 * 109.47033 * 59.99698 * 4 3 2 33 33 H 1.09002 * 109.46643 * 299.99896 * 5 4 3 34 34 H 1.08997 * 109.46984 * 59.99584 * 5 4 3 35 35 H 0.97001 * 120.00186 * 180.02562 * 10 9 7 36 36 H 1.08998 * 113.28059 * 282.97367 * 15 2 1 37 37 H 1.09001 * 113.47148 * 25.07314 * 16 15 2 38 38 H 1.08997 * 113.46749 * 254.63081 * 16 15 2 39 39 H 1.09001 * 109.47173 * 59.99941 * 22 21 20 40 40 H 1.09006 * 109.46940 * 180.02562 * 22 21 20 41 41 H 1.09006 * 109.46778 * 299.99641 * 22 21 20 42 42 H 1.08998 * 109.47593 * 59.99624 * 23 21 20 43 43 H 1.09000 * 109.46397 * 179.97438 * 23 21 20 44 44 H 1.08996 * 109.46866 * 299.99118 * 23 21 20 45 45 H 1.09002 * 109.47068 * 59.99877 * 24 21 20 46 46 H 1.08992 * 109.47463 * 180.02562 * 24 21 20 47 47 H 1.09005 * 109.47649 * 300.00807 * 24 21 20 48 48 H 1.09003 * 113.46750 * 141.89678 * 25 17 16 49 49 H 1.09000 * 113.47312 * 272.34122 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3184 5 6 2.1803 3.4855 -1.3187 6 16 1.7503 4.2967 -2.8784 7 6 2.4830 5.8771 -2.6135 8 1 3.0014 6.0839 -1.6889 9 6 2.3930 6.8568 -3.5927 10 7 1.7599 6.6053 -4.7190 11 14 3.1691 8.5325 -3.3116 12 1 3.8149 8.5608 -1.9746 13 1 4.1892 8.7878 -4.3600 14 1 2.1197 9.5812 -3.3761 15 6 1.9954 -0.7660 1.1376 16 6 1.4910 -2.2139 1.2088 17 7 2.8492 -2.6127 1.6076 18 6 3.3947 -3.6109 2.3305 19 8 2.6820 -4.4581 2.8313 20 8 4.7292 -3.6688 2.4986 21 6 5.2469 -4.7718 3.2885 22 6 4.8575 -6.0971 2.6306 23 6 6.7716 -4.6708 3.3677 24 6 4.6573 -4.7098 4.6989 25 6 3.3498 -1.4394 0.8758 26 1 -0.3633 0.4513 0.9234 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0708 29 1 1.5611 1.9273 0.8308 30 1 3.0797 1.3443 0.1081 31 1 2.0658 1.5014 -2.1492 32 1 0.5471 2.0844 -1.4266 33 1 1.7463 4.0417 -0.4877 34 1 3.2646 3.4581 -1.2106 35 1 1.6973 7.2898 -5.4035 36 1 1.9399 -0.2263 2.0830 37 1 1.1868 -2.6157 0.2423 38 1 0.7450 -2.3759 1.9869 39 1 5.2776 -6.1412 1.6258 40 1 5.2458 -6.9250 3.2239 41 1 3.7714 -6.1692 2.5739 42 1 7.0494 -3.7266 3.8361 43 1 7.1601 -5.4985 3.9610 44 1 7.1913 -4.7152 2.3628 45 1 3.5711 -4.7818 4.6421 46 1 5.0462 -5.5374 5.2920 47 1 4.9346 -3.7655 5.1676 48 1 4.1843 -0.9427 1.3708 49 1 3.5407 -1.6347 -0.1794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810073890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:31 Heat of formation + Delta-G solvation = -45.149847 kcal Electronic energy + Delta-G solvation = -25724.604259 eV Core-core repulsion = 22007.518594 eV Total energy + Delta-G solvation = -3717.085664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.20892 -39.95617 -37.27160 -36.35004 -34.33957 -32.65164 -32.40203 -29.33092 -27.76509 -27.72407 -27.51507 -25.94215 -25.57539 -24.52414 -22.36402 -20.81623 -20.50641 -19.50196 -18.14609 -17.48570 -16.98237 -16.87981 -16.06171 -15.69923 -15.30553 -15.04667 -14.80985 -14.56831 -14.32807 -14.26451 -13.87539 -13.48468 -13.37733 -12.91153 -12.87935 -12.82755 -12.71302 -12.45629 -12.24881 -12.24462 -12.09799 -11.81518 -11.73921 -11.69248 -11.53900 -11.32346 -11.08714 -10.93454 -10.73594 -10.68909 -10.62160 -10.33595 -10.27949 -9.54638 -9.13266 -9.07138 -8.55680 -8.30101 -6.53065 -6.23512 -3.93497 1.63965 2.56747 3.20348 3.21127 3.29282 3.39549 3.53501 3.84335 3.90459 4.22090 4.35684 4.40487 4.54152 4.57749 4.83940 4.88108 5.01304 5.11262 5.12405 5.13155 5.18069 5.21663 5.25421 5.28565 5.33243 5.34018 5.39733 5.44841 5.49742 5.51637 5.56394 5.64591 5.67136 5.72761 5.80672 5.91138 5.93288 5.96719 6.04914 6.19572 6.32600 6.55586 6.71140 6.86221 6.92253 7.38442 7.60356 8.04181 8.36306 9.23059 10.84698 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.022976 B = 0.001748 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.371083 B =16018.043871 C =16803.211776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.526 5.526 3 C 0.059 3.941 4 C -0.094 4.094 5 C -0.113 4.113 6 S -0.132 6.132 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.070 3.930 10 N -0.869 5.869 11 Si 0.918 3.082 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.039 3.961 16 C 0.139 3.861 17 N -0.637 5.637 18 C 0.684 3.316 19 O -0.569 6.569 20 O -0.360 6.360 21 C 0.135 3.865 22 C -0.183 4.183 23 C -0.141 4.141 24 C -0.183 4.183 25 C 0.117 3.883 26 H 0.028 0.972 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.080 0.920 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.421 -22.857 16.363 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.251 5.251 3 C -0.070 4.070 4 C -0.132 4.132 5 C -0.263 4.263 6 S 0.096 5.904 7 C -0.664 4.664 8 H 0.091 0.909 9 C -0.138 4.138 10 N -0.505 5.505 11 Si 0.744 3.256 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.071 4.071 16 C 0.017 3.983 17 N -0.379 5.379 18 C 0.441 3.559 19 O -0.459 6.459 20 O -0.274 6.274 21 C 0.098 3.902 22 C -0.240 4.240 23 C -0.198 4.198 24 C -0.241 4.241 25 C -0.007 4.007 26 H 0.046 0.954 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.099 0.901 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.897 -23.904 15.190 28.589 hybrid contribution 0.944 1.917 1.923 2.874 sum 4.840 -21.987 17.113 28.279 Atomic orbital electron populations 1.22479 0.86683 1.02271 1.01558 1.62119 1.08451 1.14835 1.39649 1.22234 1.00115 0.86465 0.98144 1.21287 1.01381 0.94083 0.96478 1.23231 1.02321 0.97492 1.03208 1.84634 1.74372 1.13344 1.18039 1.22737 1.40486 0.97492 1.05701 0.90930 1.25018 0.95233 0.99030 0.94554 1.70030 1.40056 1.34279 1.06137 0.86119 0.78884 0.82167 0.78385 1.19626 1.20568 1.20598 1.23411 0.96382 0.93161 0.94129 1.23047 0.83576 0.90796 1.00872 1.47873 1.11398 1.26338 1.52308 1.17161 0.81058 0.79607 0.78078 1.90900 1.62202 1.39570 1.53204 1.86326 1.21269 1.50896 1.68955 1.22106 0.93867 0.84111 0.90076 1.22517 1.04902 0.95729 1.00900 1.21861 0.91370 1.03237 1.03306 1.22520 1.04283 1.02488 0.94761 1.23117 0.97087 0.82515 0.97945 0.95368 0.90003 0.91409 0.94588 0.90650 0.90654 0.91514 0.92369 0.92108 0.92366 0.89809 0.88404 0.90130 0.92094 0.91076 0.89470 0.91414 0.90076 0.91369 0.89443 0.91088 0.92149 0.90132 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.14 60.06 0.55 0.71 16 2 N -0.53 -5.28 4.76 -234.65 -1.12 -6.39 16 3 C 0.06 0.70 4.95 -3.82 -0.02 0.68 16 4 C -0.09 -1.41 5.15 -26.73 -0.14 -1.54 16 5 C -0.11 -2.18 5.67 37.16 0.21 -1.97 16 6 S -0.13 -3.39 21.44 -107.50 -2.30 -5.69 16 7 C -0.52 -14.63 9.50 30.94 0.29 -14.34 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 10 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 11 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 C 0.04 0.34 3.50 -67.59 -0.24 0.10 16 16 C 0.14 1.21 7.19 -8.51 -0.06 1.15 16 17 N -0.64 -6.76 3.69 -191.10 -0.71 -7.46 16 18 C 0.68 8.45 8.26 54.06 0.45 8.90 16 19 O -0.57 -8.02 12.66 -19.28 -0.24 -8.26 16 20 O -0.36 -4.06 9.91 -40.30 -0.40 -4.46 16 21 C 0.14 1.20 1.13 -90.62 -0.10 1.09 16 22 C -0.18 -1.56 8.37 37.16 0.31 -1.25 16 23 C -0.14 -0.89 8.85 37.16 0.33 -0.56 16 24 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 25 C 0.12 1.05 8.47 -8.50 -0.07 0.98 16 26 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 0.83 6.30 -51.93 -0.33 0.50 16 28 H 0.07 0.51 7.09 -51.93 -0.37 0.14 16 29 H 0.04 0.42 8.12 -51.93 -0.42 0.00 16 30 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.01 6.47 -51.93 -0.34 0.67 16 33 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 37 H 0.10 0.80 7.89 -51.93 -0.41 0.39 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 404.54 15.07 6.10 6.10 Total: -1.00 -32.57 404.54 -10.01 -42.58 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -8.78 Total: -2.31 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 1.73 Total: -5.40 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -1.09 Total: -38.90 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -0.64 Total: -12.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.30 Total: -5.69 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.57 -10.01 -42.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810073890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.570 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds