Wall clock time and date at job start Tue Mar 31 2020 16:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 110.55226 * 2 1 4 4 O 1.44382 * 110.61591 * 122.87839 * 2 1 3 5 5 C 1.43748 * 106.97564 * 158.56167 * 4 2 1 6 6 H 1.08994 * 109.88026 * 93.05672 * 5 4 2 7 7 C 1.53000 * 109.87757 * 214.06348 * 5 4 2 8 8 C 1.54105 * 107.29069 * 333.48783 * 5 4 2 9 9 H 1.09002 * 110.48284 * 243.22278 * 8 5 4 10 10 C 1.52994 * 110.48862 * 120.70732 * 8 5 4 11 11 C 1.54804 * 104.18878 * 2.02718 * 8 5 4 12 12 H 1.09007 * 110.91183 * 262.68220 * 11 8 5 13 13 C 1.50703 * 110.90693 * 139.08108 * 11 8 5 14 14 O 1.20828 * 119.99572 * 270.84116 * 13 11 8 15 15 O 1.34226 * 120.00178 * 90.83890 * 13 11 8 16 16 C 1.45200 * 117.00169 * 180.02562 * 15 13 11 17 17 C 1.52996 * 109.47214 * 180.02562 * 16 15 13 18 18 O 1.42903 * 109.47305 * 64.99886 * 17 16 15 19 19 C 1.42896 * 114.00126 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47388 * 180.02562 * 19 18 17 21 21 O 1.42907 * 109.46856 * 65.00066 * 20 19 18 22 22 C 1.42901 * 113.99821 * 180.02562 * 21 20 19 23 23 C 1.50696 * 109.47067 * 179.97438 * 22 21 20 24 24 H 1.07997 * 120.00300 * 359.97438 * 23 22 21 25 25 C 1.37883 * 119.99794 * 179.97438 * 23 22 21 26 26 N 1.31519 * 119.99695 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00179 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.46854 * 89.99938 * 27 25 23 29 29 H 1.48496 * 109.46903 * 209.99802 * 27 25 23 30 30 H 1.48494 * 109.47131 * 330.00161 * 27 25 23 31 31 H 1.08996 * 109.47334 * 298.57495 * 1 2 3 32 32 H 1.09001 * 109.47296 * 178.57699 * 1 2 3 33 33 H 1.08996 * 109.46891 * 58.57495 * 1 2 3 34 34 H 1.09000 * 109.47359 * 58.54768 * 7 5 4 35 35 H 1.09003 * 109.46928 * 178.54139 * 7 5 4 36 36 H 1.08997 * 109.46981 * 298.54226 * 7 5 4 37 37 H 1.08997 * 109.47338 * 58.97918 * 10 8 5 38 38 H 1.09002 * 109.47448 * 178.97678 * 10 8 5 39 39 H 1.09000 * 109.47216 * 298.97788 * 10 8 5 40 40 H 1.09005 * 109.46915 * 300.00133 * 16 15 13 41 41 H 1.08997 * 109.46850 * 60.00348 * 16 15 13 42 42 H 1.08996 * 109.47226 * 185.00075 * 17 16 15 43 43 H 1.08999 * 109.47371 * 305.00128 * 17 16 15 44 44 H 1.09001 * 109.47486 * 300.00463 * 19 18 17 45 45 H 1.08998 * 109.47093 * 60.00164 * 19 18 17 46 46 H 1.08997 * 109.47286 * 185.00177 * 20 19 18 47 47 H 1.08999 * 109.47070 * 305.00458 * 20 19 18 48 48 H 1.08993 * 109.47328 * 300.00038 * 22 21 20 49 49 H 1.09004 * 109.47205 * 59.99715 * 22 21 20 50 50 H 0.96993 * 119.99751 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 8 2.0384 -0.7336 1.1349 5 6 3.3839 -1.1243 0.8136 6 1 4.0855 -0.3779 1.1860 7 6 3.6934 -2.4863 1.4381 8 6 3.4795 -1.2178 -0.7216 9 1 3.6997 -2.2403 -1.0285 10 6 4.5479 -0.2592 -1.2511 11 6 2.0758 -0.7912 -1.2159 12 1 1.4549 -1.6628 -1.4234 13 6 2.1797 0.0942 -2.4310 14 8 2.2754 1.2915 -2.2995 15 8 2.1659 -0.4472 -3.6591 16 6 2.2703 0.4658 -4.7833 17 6 2.2369 -0.3286 -6.0904 18 8 0.9622 -0.9588 -6.2323 19 6 0.8250 -1.7301 -7.4274 20 6 -0.5710 -2.3546 -7.4740 21 8 -1.5521 -1.3206 -7.5766 22 6 -2.8977 -1.7992 -7.6268 23 6 -3.8428 -0.6303 -7.7333 24 1 -3.4549 0.3773 -7.7596 25 6 -5.2030 -0.8472 -7.7972 26 7 -6.0278 0.1729 -7.8907 27 14 -5.8741 -2.5898 -7.7511 28 1 -6.1281 -2.9852 -6.3424 29 1 -7.1435 -2.6519 -8.5192 30 1 -4.8843 -3.5176 -8.3548 31 1 -0.3634 0.4915 0.9024 32 1 -0.3634 -1.0273 -0.0255 33 1 -0.3633 0.5358 -0.8769 34 1 2.9835 -3.2257 1.0675 35 1 4.7057 -2.7878 1.1690 36 1 3.6115 -2.4156 2.5227 37 1 5.5113 -0.5072 -0.8057 38 1 4.6142 -0.3519 -2.3352 39 1 4.2794 0.7643 -0.9897 40 1 1.4345 1.1652 -4.7621 41 1 3.2078 1.0178 -4.7171 42 1 2.4042 0.3460 -6.9300 43 1 3.0180 -1.0886 -6.0737 44 1 0.9628 -1.0843 -8.2946 45 1 1.5769 -2.5191 -7.4389 46 1 -0.6456 -3.0135 -8.3391 47 1 -0.7425 -2.9292 -6.5638 48 1 -3.0209 -2.4467 -8.4948 49 1 -3.1172 -2.3620 -6.7196 50 1 -6.9847 0.0204 -7.9352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861319639.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:48 Heat of formation + Delta-G solvation = -234.216684 kcal Electronic energy + Delta-G solvation = -28942.754722 eV Core-core repulsion = 24742.424882 eV Total energy + Delta-G solvation = -4200.329840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 330.197 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36636 -39.65073 -38.14660 -36.82216 -36.26118 -34.20047 -33.15193 -32.67264 -31.17959 -29.80951 -29.22314 -27.82526 -27.30433 -24.35512 -23.19194 -22.25638 -22.18946 -21.79564 -21.49374 -20.23868 -17.97241 -17.31726 -17.03121 -16.86298 -16.53757 -16.18744 -16.02127 -15.52471 -15.41025 -14.99732 -14.60402 -14.48967 -14.16884 -14.01604 -13.85859 -13.63297 -13.16972 -13.04781 -12.87417 -12.73923 -12.58186 -12.31781 -12.27915 -12.17349 -12.05621 -11.95655 -11.85786 -11.43337 -11.31263 -11.04372 -11.00051 -10.98336 -10.81417 -10.75668 -10.54292 -10.44968 -10.01576 -9.87273 -9.55868 -9.16792 -8.85104 -8.46327 -6.10005 -4.08874 1.95456 2.38362 3.25821 3.32375 3.33567 3.37147 3.63918 3.92271 4.11356 4.28052 4.36588 4.43240 4.59725 4.64812 4.73959 4.75992 4.88846 4.91394 4.96032 5.03279 5.07974 5.11157 5.21136 5.21445 5.27319 5.30682 5.32188 5.35461 5.46412 5.47520 5.52639 5.55405 5.62512 5.71809 5.78267 5.81642 5.82516 5.86971 5.96456 6.07227 6.25359 6.55583 6.60260 7.00541 7.24845 7.55291 7.60770 8.02258 8.67885 9.01815 9.49121 11.03107 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012801 B = 0.002387 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.865446 B =11726.458677 C =12784.972123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.091 3.909 3 H 0.089 0.911 4 O -0.364 6.364 5 C 0.077 3.923 6 H 0.074 0.926 7 C -0.152 4.152 8 C -0.108 4.108 9 H 0.099 0.901 10 C -0.158 4.158 11 C -0.117 4.117 12 H 0.120 0.880 13 C 0.480 3.520 14 O -0.506 6.506 15 O -0.344 6.344 16 C 0.069 3.931 17 C 0.062 3.938 18 O -0.368 6.368 19 C 0.068 3.932 20 C 0.059 3.941 21 O -0.374 6.374 22 C 0.168 3.832 23 C -0.518 4.518 24 H 0.082 0.918 25 C 0.071 3.929 26 N -0.896 5.896 27 Si 0.877 3.123 28 H -0.273 1.273 29 H -0.282 1.282 30 H -0.267 1.267 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.002 0.998 49 H -0.001 1.001 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.936 -5.399 14.615 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.033 3.967 3 H 0.107 0.893 4 O -0.283 6.283 5 C 0.020 3.980 6 H 0.092 0.908 7 C -0.209 4.209 8 C -0.127 4.127 9 H 0.117 0.883 10 C -0.215 4.215 11 C -0.136 4.136 12 H 0.138 0.862 13 C 0.323 3.677 14 O -0.394 6.394 15 O -0.260 6.260 16 C -0.004 4.004 17 C -0.015 4.015 18 O -0.287 6.287 19 C -0.008 4.008 20 C -0.019 4.019 21 O -0.293 6.293 22 C 0.093 3.907 23 C -0.556 4.556 24 H 0.100 0.900 25 C -0.130 4.130 26 N -0.534 5.534 27 Si 0.703 3.297 28 H -0.199 1.199 29 H -0.208 1.208 30 H -0.191 1.191 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.020 0.980 49 H 0.017 0.983 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 24.544 -4.811 14.917 29.121 hybrid contribution -0.229 -1.045 -0.551 1.203 sum 24.315 -5.856 14.366 28.842 Atomic orbital electron populations 1.21844 0.92082 1.03487 1.03382 1.23059 0.95866 0.95562 0.82173 0.89306 1.88935 1.27569 1.73718 1.38125 1.22825 0.85205 0.97333 0.92659 0.90816 1.21950 1.01868 0.95425 1.01676 1.22565 0.92881 1.01653 0.95571 0.88252 1.22033 0.98351 0.99784 1.01310 1.22754 0.99814 0.99779 0.91267 0.86155 1.23010 0.72148 0.87951 0.84607 1.90665 1.45383 1.16392 1.86980 1.86555 1.83004 1.41629 1.14800 1.23171 1.03216 0.91650 0.82393 1.22501 0.87423 0.96678 0.94901 1.88098 1.32100 1.66907 1.41587 1.22564 0.96348 0.94355 0.87545 1.22336 0.88274 0.91414 0.99844 1.87973 1.15963 1.30802 1.94572 1.20608 0.79331 0.96469 0.94285 1.20890 0.89800 0.94127 1.50758 0.89973 1.24778 0.96442 0.97134 0.94684 1.69879 1.03166 1.30193 1.50172 0.86838 0.78877 0.85229 0.78729 1.19892 1.20789 1.19130 0.91060 0.91325 0.90615 0.91609 0.91144 0.91644 0.91346 0.92156 0.91319 0.89666 0.89792 0.90869 0.92523 0.92493 0.92557 0.92785 0.93449 0.97998 0.98323 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.66 37.16 0.36 -1.17 16 2 C 0.09 0.95 3.28 -25.68 -0.08 0.86 16 3 H 0.09 0.99 7.24 -51.93 -0.38 0.61 16 4 O -0.36 -3.81 10.89 -35.23 -0.38 -4.19 16 5 C 0.08 0.61 3.72 -26.15 -0.10 0.51 16 6 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 7 C -0.15 -0.94 9.36 37.16 0.35 -0.59 16 8 C -0.11 -0.84 3.21 -89.10 -0.29 -1.13 16 9 H 0.10 0.64 7.70 -51.93 -0.40 0.25 16 10 C -0.16 -1.19 7.88 37.15 0.29 -0.89 16 11 C -0.12 -1.16 3.00 -89.77 -0.27 -1.43 16 12 H 0.12 1.14 8.05 -51.93 -0.42 0.72 16 13 C 0.48 5.85 5.25 36.01 0.19 6.04 16 14 O -0.51 -7.09 14.71 -18.75 -0.28 -7.36 16 15 O -0.34 -4.40 10.19 -42.01 -0.43 -4.83 16 16 C 0.07 0.81 5.84 37.16 0.22 1.03 16 17 C 0.06 0.70 6.33 37.16 0.24 0.94 16 18 O -0.37 -5.93 10.28 -48.79 -0.50 -6.43 16 19 C 0.07 0.98 6.32 37.16 0.23 1.22 16 20 C 0.06 1.05 6.32 37.16 0.23 1.28 16 21 O -0.37 -9.01 10.29 -40.08 -0.41 -9.42 16 22 C 0.17 4.38 4.76 36.00 0.17 4.55 16 23 C -0.52 -15.74 9.99 -34.44 -0.34 -16.08 16 24 H 0.08 2.74 8.06 -52.49 -0.42 2.31 16 25 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 26 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 27 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 28 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.48 7.44 -51.93 -0.39 0.10 16 39 H 0.07 0.61 7.32 -51.93 -0.38 0.23 16 40 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 41 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.00 0.06 7.20 -51.93 -0.37 -0.31 16 49 H 0.00 -0.02 7.57 -51.93 -0.39 -0.42 16 50 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 407.62 15.07 6.14 6.14 Total: -1.00 -35.41 407.62 -7.71 -43.12 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -9.06 Total: -3.96 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 1.10 Total: -2.82 kcal Atomic # 7 Polarization: -27.99 SS G_CDS: 0.77 Total: -27.22 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -2.00 Total: -32.23 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.41 -7.71 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319639.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.094 kcal (2) G-P(sol) polarization free energy of solvation -35.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds