Wall clock time and date at job start Tue Mar 31 2020 17:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47236 * 2 1 4 4 O 1.42905 * 109.46983 * 119.99745 * 2 1 3 5 5 C 1.52996 * 109.47231 * 239.99388 * 2 1 3 6 6 N 1.46897 * 109.47373 * 180.02562 * 5 2 1 7 7 C 1.46903 * 111.00151 * 293.95524 * 6 5 2 8 8 C 1.46900 * 111.00274 * 170.00143 * 6 5 2 9 9 C 1.52996 * 109.47306 * 199.72783 * 8 6 5 10 10 H 1.08999 * 109.58231 * 301.30938 * 9 8 6 11 11 C 1.53188 * 109.58897 * 61.73836 * 9 8 6 12 12 C 1.53103 * 109.33428 * 174.42370 * 11 9 8 13 13 C 1.53046 * 109.50037 * 298.65648 * 12 11 9 14 14 C 1.53191 * 109.33853 * 61.35019 * 13 12 11 15 15 N 1.46929 * 108.77535 * 305.34536 * 14 13 12 16 16 C 1.34776 * 120.63459 * 233.58850 * 15 14 13 17 17 O 1.21273 * 120.00131 * 174.95059 * 16 15 14 18 18 C 1.50701 * 119.99587 * 354.95776 * 16 15 14 19 19 S 1.81000 * 109.46862 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99888 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00188 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00282 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00299 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99560 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46924 * 89.99971 * 24 22 20 26 26 H 1.48501 * 109.46704 * 209.99827 * 24 22 20 27 27 H 1.48494 * 109.47087 * 329.99983 * 24 22 20 28 28 H 1.08999 * 109.47750 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47302 * 300.00853 * 1 2 3 30 30 H 1.09003 * 109.47188 * 60.00050 * 1 2 3 31 31 H 0.96702 * 114.00081 * 59.99386 * 4 2 1 32 32 H 1.09003 * 109.46576 * 60.00187 * 5 2 1 33 33 H 1.08998 * 109.47260 * 300.00904 * 5 2 1 34 34 H 1.09004 * 109.46831 * 292.73357 * 7 6 5 35 35 H 1.09000 * 109.46719 * 52.72613 * 7 6 5 36 36 H 1.08997 * 109.47241 * 172.73186 * 7 6 5 37 37 H 1.09003 * 109.46990 * 79.71986 * 8 6 5 38 38 H 1.09008 * 109.47133 * 319.72928 * 8 6 5 39 39 H 1.09002 * 109.50026 * 294.37581 * 11 9 8 40 40 H 1.09004 * 109.49722 * 54.43361 * 11 9 8 41 41 H 1.08994 * 109.50682 * 178.63269 * 12 11 9 42 42 H 1.08993 * 109.45074 * 58.64799 * 12 11 9 43 43 H 1.08993 * 109.49799 * 301.37617 * 13 12 11 44 44 H 1.09000 * 109.49401 * 181.31570 * 13 12 11 45 45 H 1.08994 * 109.59205 * 65.13026 * 14 13 12 46 46 H 1.09004 * 109.58605 * 185.41953 * 14 13 12 47 47 H 1.08999 * 109.46912 * 299.99782 * 18 16 15 48 48 H 1.08999 * 109.47594 * 59.99534 * 18 16 15 49 49 H 0.97003 * 120.00134 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0400 -0.7214 -1.2491 6 7 3.5090 -0.7219 -1.2488 7 6 4.0360 0.6417 -1.3931 8 6 4.0354 -1.6036 -2.2994 9 6 5.4855 -1.9704 -1.9781 10 1 6.0847 -1.0626 -1.9064 11 6 5.5406 -2.7318 -0.6500 12 6 6.9716 -3.2166 -0.4026 13 6 7.3890 -4.1702 -1.5245 14 6 7.3551 -3.4251 -2.8625 15 7 6.0224 -2.8323 -3.0400 16 6 5.3062 -3.0743 -4.1558 17 8 4.1722 -2.6552 -4.2512 18 6 5.9146 -3.8658 -5.2847 19 16 4.7130 -4.0196 -6.6296 20 6 5.6604 -4.9595 -7.7802 21 1 6.6697 -5.2551 -7.5347 22 6 5.1092 -5.3209 -9.0018 23 7 5.8167 -6.0234 -9.8610 24 14 3.3632 -4.8101 -9.4262 25 1 3.3852 -3.4908 -10.1076 26 1 2.7565 -5.8226 -10.3273 27 1 2.5600 -4.7109 -8.1812 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.7209 -1.5952 1.2331 32 1 1.6767 -0.2075 -2.1391 33 1 1.6766 -1.7490 -1.2491 34 1 3.7958 1.0208 -2.3864 35 1 3.5853 1.2870 -0.6391 36 1 5.1179 0.6290 -1.2609 37 1 3.9947 -1.0891 -3.2595 38 1 3.4332 -2.5109 -2.3477 39 1 5.2352 -2.0709 0.1612 40 1 4.8682 -3.5886 -0.6937 41 1 7.0191 -3.7379 0.5534 42 1 7.6465 -2.3610 -0.3834 43 1 6.6998 -5.0138 -1.5602 44 1 8.3993 -4.5336 -1.3360 45 1 8.1081 -2.6371 -2.8613 46 1 7.5579 -4.1232 -3.6748 47 1 6.8048 -3.3533 -5.6492 48 1 6.1877 -4.8584 -4.9267 49 1 5.4313 -6.2762 -10.7146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157572877.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:29 Heat of formation + Delta-G solvation = -74.337302 kcal Electronic energy + Delta-G solvation = -27368.879224 eV Core-core repulsion = 23650.527896 eV Total energy + Delta-G solvation = -3718.351327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48301 -38.53777 -37.22240 -36.14862 -32.94663 -32.45851 -32.29262 -31.01996 -29.12285 -27.37576 -27.01549 -25.63470 -24.68628 -23.58367 -21.64125 -20.98239 -20.95300 -19.06406 -17.59299 -16.72351 -16.61831 -16.26323 -15.96560 -15.58075 -15.03790 -14.94698 -14.73874 -14.55380 -14.32753 -14.04133 -13.96230 -13.55695 -13.32035 -13.20555 -13.03835 -12.79390 -12.72376 -12.30477 -12.16376 -12.10443 -11.87853 -11.75633 -11.57123 -11.28404 -11.06682 -11.02905 -10.93265 -10.91617 -10.71984 -10.63180 -10.57482 -10.08359 -9.87315 -9.25136 -9.02498 -8.51311 -8.49920 -8.06820 -6.93718 -6.30846 -4.02439 2.69046 2.90597 3.13934 3.30601 3.47510 3.53978 3.85977 4.30561 4.34069 4.54892 4.57413 4.69744 4.73638 4.81499 4.87713 4.92952 4.96579 5.08255 5.10241 5.19015 5.20748 5.25101 5.30224 5.40028 5.45995 5.47601 5.55971 5.59718 5.64864 5.73724 5.74920 5.80926 5.81966 5.86059 5.93067 5.94229 5.98822 6.03960 6.09101 6.20651 6.32152 6.67597 6.99435 7.04090 7.51356 7.53951 7.92277 8.39868 8.44935 9.15389 10.78477 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.003312 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.578613 B = 8453.006503 C =10216.525208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.106 3.894 3 H 0.095 0.905 4 O -0.552 6.552 5 C 0.027 3.973 6 N -0.539 5.539 7 C 0.021 3.979 8 C 0.063 3.937 9 C 0.156 3.844 10 H 0.066 0.934 11 C -0.119 4.119 12 C -0.120 4.120 13 C -0.136 4.136 14 C 0.108 3.892 15 N -0.614 5.614 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.122 4.122 19 S -0.144 6.144 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.372 0.628 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.024 0.976 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 10.014 22.290 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.047 3.953 3 H 0.113 0.887 4 O -0.356 6.356 5 C -0.102 4.102 6 N -0.264 5.264 7 C -0.127 4.127 8 C -0.064 4.064 9 C 0.053 3.947 10 H 0.084 0.916 11 C -0.157 4.157 12 C -0.158 4.158 13 C -0.174 4.174 14 C -0.015 4.015 15 N -0.350 5.350 16 C 0.321 3.679 17 O -0.393 6.393 18 C -0.273 4.273 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.193 1.193 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.218 0.782 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.191 10.926 22.500 25.216 hybrid contribution 0.311 -0.692 -1.382 1.576 sum -2.880 10.234 21.119 23.644 Atomic orbital electron populations 1.22496 0.96530 1.02705 1.02681 1.21916 0.92035 0.96664 0.84706 0.88709 1.86574 1.77336 1.28695 1.43013 1.22797 0.88490 1.01410 0.97460 1.61878 1.06599 1.09346 1.48622 1.22446 1.00728 0.89966 0.99565 1.22837 0.94014 0.97697 0.91823 1.21154 0.94801 0.92103 0.86663 0.91611 1.21861 0.96194 1.00415 0.97221 1.21555 0.97095 0.99026 0.98124 1.21929 1.02043 0.98767 0.94681 1.21740 0.83678 0.97606 0.98492 1.48174 1.18399 1.50064 1.18358 1.20289 0.85661 0.79587 0.82326 1.90687 1.17866 1.50726 1.80011 1.23351 1.03923 1.02389 0.97636 1.84733 1.21104 1.72371 1.13510 1.22306 1.03046 1.38779 1.02649 0.89422 1.24711 0.98110 0.93575 0.94908 1.69933 1.37227 1.36256 1.08292 0.86735 0.84953 0.79202 0.80942 1.19253 1.19944 1.15982 0.92176 0.91739 0.91651 0.78176 0.94020 0.90541 0.95773 0.91601 0.91600 0.91454 0.89690 0.89637 0.91985 0.91872 0.92085 0.91357 0.90833 0.91487 0.89194 0.88684 0.88621 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 9.53 37.16 0.35 -0.97 16 2 C 0.11 0.92 3.47 -26.73 -0.09 0.83 16 3 H 0.10 0.84 6.41 -51.93 -0.33 0.50 16 4 O -0.55 -5.30 13.20 -35.23 -0.47 -5.77 16 5 C 0.03 0.28 4.60 -3.83 -0.02 0.26 16 6 N -0.54 -6.06 3.99 -242.92 -0.97 -7.03 16 7 C 0.02 0.22 9.25 60.07 0.56 0.77 16 8 C 0.06 0.86 2.84 -3.83 -0.01 0.85 16 9 C 0.16 1.91 2.99 -67.60 -0.20 1.71 16 10 H 0.07 0.78 6.96 -51.93 -0.36 0.42 16 11 C -0.12 -1.24 5.15 -26.58 -0.14 -1.38 16 12 C -0.12 -1.07 5.89 -26.65 -0.16 -1.22 16 13 C -0.14 -1.25 6.08 -26.61 -0.16 -1.41 16 14 C 0.11 1.17 6.32 -3.71 -0.02 1.14 16 15 N -0.61 -8.36 2.97 -165.22 -0.49 -8.85 16 16 C 0.53 9.38 7.63 -10.99 -0.08 9.29 16 17 O -0.52 -10.42 11.27 5.56 0.06 -10.35 16 18 C -0.12 -2.36 4.56 36.01 0.16 -2.20 16 19 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 20 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.19 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 24 Si 0.86 21.68 27.74 -169.99 -4.72 16.96 16 25 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.37 2.54 9.05 45.56 0.41 2.95 16 32 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.08 0.80 7.83 -51.93 -0.41 0.39 16 34 H 0.02 0.26 8.02 -51.93 -0.42 -0.16 16 35 H 0.07 0.60 6.17 -51.93 -0.32 0.28 16 36 H 0.07 0.65 6.98 -51.93 -0.36 0.28 16 37 H 0.07 1.12 6.12 -51.93 -0.32 0.80 16 38 H 0.08 1.34 6.71 -51.92 -0.35 0.99 16 39 H 0.09 0.90 7.84 -51.93 -0.41 0.49 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.00 5.97 -51.93 -0.31 0.69 16 47 H 0.09 1.74 8.11 -51.92 -0.42 1.31 16 48 H 0.10 1.74 7.48 -51.92 -0.39 1.35 16 49 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -32.62 387.88 -9.33 -41.95 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.79 Total: 2.74 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 0.40 Total: -4.21 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: -0.68 Total: -41.58 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.40 Total: -16.12 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.62 -9.33 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157572877.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.383 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds