Wall clock time and date at job start Tue Mar 31 2020 16:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47027 * 2 1 4 4 C 1.53000 * 109.47431 * 239.99550 * 2 1 3 5 5 C 1.53001 * 109.47091 * 175.00029 * 4 2 1 6 6 C 1.50696 * 109.47155 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00238 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00172 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99797 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00181 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46913 * 90.00022 * 10 8 6 12 12 H 1.48501 * 109.47083 * 330.00474 * 10 8 6 13 13 H 1.48490 * 109.47246 * 209.99827 * 10 8 6 14 14 N 1.46898 * 109.46897 * 119.99558 * 2 1 3 15 15 C 1.46647 * 111.00116 * 47.59273 * 14 2 1 16 16 C 1.51975 * 108.91523 * 174.27581 * 15 14 2 17 17 C 1.52749 * 108.48506 * 62.71051 * 16 15 14 18 18 C 1.53099 * 110.61078 * 300.29908 * 17 16 15 19 19 H 1.08995 * 112.52642 * 284.47633 * 18 17 16 20 20 C 1.54646 * 106.92431 * 161.36403 * 18 17 16 21 21 N 1.47146 * 106.73616 * 268.68903 * 20 18 17 22 22 S 1.65603 * 125.64515 * 178.85998 * 21 20 18 23 23 C 1.81397 * 104.44752 * 269.95239 * 22 21 20 24 24 O 1.42093 * 104.27799 * 26.02512 * 22 21 20 25 25 O 1.42105 * 104.27475 * 153.88287 * 22 21 20 26 26 C 1.47762 * 108.70477 * 358.81818 * 21 20 18 27 27 C 1.44539 * 111.00208 * 280.09446 * 14 2 1 28 28 H 1.09007 * 109.26688 * 300.53804 * 27 14 2 29 29 H 1.08997 * 109.47447 * 307.57750 * 1 2 3 30 30 H 1.09002 * 109.46927 * 67.57951 * 1 2 3 31 31 H 1.09001 * 109.46908 * 187.57086 * 1 2 3 32 32 H 1.09005 * 109.46917 * 55.00464 * 4 2 1 33 33 H 1.08997 * 109.47606 * 295.00370 * 4 2 1 34 34 H 1.08996 * 109.47364 * 59.99744 * 5 4 2 35 35 H 1.09001 * 109.47190 * 300.00095 * 5 4 2 36 36 H 0.97004 * 120.00375 * 359.97438 * 9 8 6 37 37 H 1.09003 * 109.72293 * 293.22587 * 15 14 2 38 38 H 1.09000 * 109.72574 * 53.88287 * 15 14 2 39 39 H 1.09001 * 109.34957 * 303.09440 * 16 15 14 40 40 H 1.09010 * 109.88957 * 182.64077 * 16 15 14 41 41 H 1.09001 * 109.24882 * 180.02562 * 17 16 15 42 42 H 1.08995 * 109.24817 * 60.59316 * 17 16 15 43 43 H 1.08995 * 110.52900 * 149.17338 * 20 18 17 44 44 H 1.08998 * 109.59417 * 27.68331 * 20 18 17 45 45 H 1.09007 * 109.47345 * 60.00029 * 23 22 21 46 46 H 1.09005 * 109.47309 * 180.02562 * 23 22 21 47 47 H 1.09003 * 109.47529 * 300.00288 * 23 22 21 48 48 H 1.08996 * 110.49139 * 217.95825 * 26 21 20 49 49 H 1.09007 * 110.59975 * 95.36962 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3135 6 6 4.0673 -1.3233 -2.5442 7 1 3.3689 -1.8038 -3.2133 8 6 5.4186 -1.3602 -2.8155 9 7 6.2691 -0.7755 -2.0005 10 14 6.0414 -2.2408 -4.3406 11 1 6.0919 -1.2865 -5.4773 12 1 5.1248 -3.3605 -4.6747 13 1 7.4025 -2.7755 -4.0824 14 7 2.0196 -0.6924 1.1995 15 6 1.3243 -1.9694 1.3898 16 6 1.9616 -2.7086 2.5547 17 6 1.7705 -1.8747 3.8202 18 6 2.4247 -0.4995 3.6633 19 1 3.5105 -0.5415 3.7480 20 6 1.8002 0.4213 4.7374 21 7 0.6389 1.0741 4.1127 22 16 -0.3865 2.1392 4.8587 23 6 -1.6898 1.0936 5.5648 24 8 0.4005 2.7196 5.8897 25 8 -0.9025 2.9307 3.7973 26 6 0.5398 0.6227 2.7092 27 6 1.9693 0.1746 2.3549 28 1 2.5858 1.0546 2.1714 29 1 -0.3634 0.6267 0.8144 30 1 -0.3633 0.3920 -0.9500 31 1 -0.3633 -1.0187 0.1354 32 1 1.6055 -0.2618 -2.1370 33 1 1.7517 -1.7716 -1.2055 34 1 3.9995 -1.0727 -0.4258 35 1 3.8533 0.4369 -1.3572 36 1 5.9457 -0.3178 -1.2086 37 1 0.2753 -1.7860 1.6226 38 1 1.4009 -2.5688 0.4826 39 1 3.0257 -2.8415 2.3594 40 1 1.4869 -3.6818 2.6807 41 1 2.2240 -2.3939 4.6645 42 1 0.7046 -1.7463 4.0083 43 1 2.5196 1.1734 5.0612 44 1 1.4763 -0.1775 5.5886 45 1 -1.2487 0.3905 6.2715 46 1 -2.4180 1.7193 6.0809 47 1 -2.1862 0.5425 4.7661 48 1 0.2271 1.4447 2.0652 49 1 -0.1545 -0.2133 2.6233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500271.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:49 Heat of formation + Delta-G solvation = -64.982865 kcal Electronic energy + Delta-G solvation = -28474.111596 eV Core-core repulsion = 24756.165907 eV Total energy + Delta-G solvation = -3717.945689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81249 -37.40545 -37.07424 -36.21879 -34.65633 -33.36146 -31.13343 -30.57497 -29.82004 -28.84424 -28.06434 -25.32823 -24.30406 -22.61453 -22.30027 -21.52026 -19.71942 -19.21868 -18.56316 -17.96150 -16.88950 -16.53624 -16.31426 -16.10020 -15.16100 -14.95214 -14.63946 -14.40847 -13.85545 -13.70514 -13.67923 -13.61100 -13.52256 -13.22958 -12.83821 -12.69365 -12.65773 -12.38489 -12.30373 -12.17794 -12.04397 -12.01008 -11.63714 -11.59947 -11.37751 -11.23321 -10.91069 -10.78289 -10.66525 -10.52957 -10.22022 -10.09052 -9.96930 -9.73087 -9.52744 -9.25395 -8.37465 -8.19514 -7.87184 -6.22658 -3.90055 -0.09272 2.30954 3.48912 3.52599 3.56765 3.68153 3.72292 3.92786 4.33054 4.34976 4.47366 4.62300 4.64472 4.70877 4.91286 4.98379 5.11895 5.21775 5.22984 5.30017 5.32046 5.39584 5.42090 5.52979 5.54524 5.58411 5.63677 5.68481 5.77892 5.84068 5.91530 5.94116 5.97571 6.10407 6.17137 6.21129 6.23939 6.31141 6.43381 6.56843 6.75253 7.14687 7.43253 7.51114 7.66064 7.85791 8.38822 8.62612 9.04329 9.81700 11.18370 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.003008 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.016845 B = 9306.245398 C = 9515.727938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.082 3.918 3 H 0.077 0.923 4 C -0.091 4.091 5 C 0.017 3.983 6 C -0.600 4.600 7 H 0.043 0.957 8 C 0.013 3.987 9 N -0.917 5.917 10 Si 1.068 2.932 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.286 1.286 14 N -0.512 5.512 15 C 0.057 3.943 16 C -0.120 4.120 17 C -0.112 4.112 18 C -0.088 4.088 19 H 0.103 0.897 20 C 0.123 3.877 21 N -1.011 6.011 22 S 2.626 3.374 23 C -0.675 4.675 24 O -0.954 6.954 25 O -0.952 6.952 26 C 0.080 3.920 27 C 0.095 3.905 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.023 0.977 35 H -0.002 1.002 36 H 0.270 0.730 37 H 0.032 0.968 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.090 0.910 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 -0.422 17.352 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.025 4.025 3 H 0.095 0.905 4 C -0.129 4.129 5 C -0.020 4.020 6 C -0.639 4.639 7 H 0.062 0.938 8 C -0.190 4.190 9 N -0.554 5.554 10 Si 0.897 3.103 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.211 1.211 14 N -0.234 5.234 15 C -0.070 4.070 16 C -0.158 4.158 17 C -0.150 4.150 18 C -0.108 4.108 19 H 0.121 0.879 20 C -0.002 4.002 21 N -0.850 5.850 22 S 2.720 3.280 23 C -0.825 4.825 24 O -0.944 6.944 25 O -0.943 6.943 26 C -0.047 4.047 27 C -0.017 4.017 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.017 0.983 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.108 0.892 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.392 0.059 16.526 21.914 hybrid contribution -2.739 -0.082 1.114 2.958 sum -17.130 -0.023 17.640 24.589 Atomic orbital electron populations 1.22933 0.98439 1.02058 1.02511 1.21873 0.91492 0.98360 0.90775 0.90492 1.21546 0.99840 0.98483 0.93071 1.19112 0.89883 0.95816 0.97176 1.22153 0.94474 1.37707 1.09546 0.93832 1.25746 0.93571 0.97027 1.02660 1.70720 1.37307 1.33492 1.13842 0.83567 0.75685 0.75950 0.75088 1.21673 1.21682 1.21139 1.60566 1.57258 1.03705 1.01875 1.21885 0.94896 0.90963 0.99294 1.21364 1.02807 0.97614 0.94000 1.21593 1.00065 0.94918 0.98412 1.22190 1.01020 0.94334 0.93229 0.87853 1.21990 0.87195 0.95575 0.95489 1.58635 1.40973 1.64182 1.21170 1.04440 0.75124 0.74251 0.74207 1.30604 1.20216 1.17677 1.13976 1.93604 1.66870 1.74389 1.59553 1.93615 1.81083 1.65394 1.54163 1.23179 1.01210 0.99725 0.80608 1.21908 0.93386 0.96095 0.90299 0.88989 0.92188 0.92058 0.92234 0.93198 0.93221 0.95839 0.98330 0.91932 0.95042 0.89766 0.90413 0.91684 0.91798 0.92401 0.90638 0.91635 0.85492 0.85546 0.85523 0.89232 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.59 7.97 37.16 0.30 -2.29 16 2 C 0.08 1.31 2.19 -67.71 -0.15 1.16 16 3 H 0.08 1.29 7.85 -51.93 -0.41 0.88 16 4 C -0.09 -1.83 4.64 -26.73 -0.12 -1.95 16 5 C 0.02 0.44 4.17 -27.88 -0.12 0.32 16 6 C -0.60 -17.25 9.11 -34.44 -0.31 -17.57 16 7 H 0.04 1.24 7.74 -52.49 -0.41 0.83 16 8 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 9 N -0.92 -28.50 13.65 55.43 0.76 -27.75 16 10 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 14 N -0.51 -7.51 3.86 -220.12 -0.85 -8.36 16 15 C 0.06 0.73 4.11 -4.48 -0.02 0.71 16 16 C -0.12 -1.34 6.07 -27.38 -0.17 -1.50 16 17 C -0.11 -1.03 4.70 -26.81 -0.13 -1.16 16 18 C -0.09 -0.91 3.62 -89.15 -0.32 -1.23 16 19 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 20 C 0.12 1.11 6.22 -2.82 -0.02 1.10 16 21 N -1.01 -9.83 3.63 -111.45 -0.40 -10.24 16 22 S 2.63 24.96 6.29 -107.50 -0.68 24.29 16 23 C -0.68 -3.64 10.99 101.05 1.11 -2.53 16 24 O -0.95 -11.96 17.60 -57.54 -1.01 -12.97 16 25 O -0.95 -12.44 17.30 -57.54 -1.00 -13.43 16 26 C 0.08 0.87 3.94 -2.86 -0.01 0.86 16 27 C 0.09 1.19 2.57 -67.93 -0.17 1.02 16 28 H 0.09 1.28 8.02 -51.92 -0.42 0.86 16 29 H 0.06 0.70 4.31 -51.93 -0.22 0.47 16 30 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16 31 H 0.06 0.72 5.99 -51.93 -0.31 0.41 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.99 6.52 -51.93 -0.34 0.65 16 34 H 0.02 0.63 7.62 -51.93 -0.40 0.23 16 35 H 0.00 -0.04 8.01 -51.93 -0.42 -0.46 16 36 H 0.27 8.39 7.22 -40.82 -0.29 8.10 16 37 H 0.03 0.36 4.98 -51.93 -0.26 0.10 16 38 H 0.08 1.23 6.46 -51.93 -0.34 0.89 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.49 7.20 -51.93 -0.37 0.11 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.45 7.73 -51.93 -0.40 0.05 16 45 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 46 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 48 H 0.09 1.07 6.05 -51.93 -0.31 0.75 16 49 H 0.07 0.65 5.50 -51.93 -0.29 0.37 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -35.52 371.94 -11.09 -46.61 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.20 Total: -1.69 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -0.23 Total: -22.78 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.50 Total: -46.34 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -2.01 Total: -26.40 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Atomic # 16 Polarization: 24.96 SS G_CDS: -0.68 Total: 24.29 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.52 -11.09 -46.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500271.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.373 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds